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PMID: 3070349 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Random cloning of bent DNA segments from Saccharomyces cerevisiae and primary characterization of their structures.

Molecular & general genetics : MGG ·Vol. 214 ·No. 2 ·1988-10-00 ·Pages 249-56

Mizuno T, Itoh K

Abstract

Until recently it was assumed that any short segment of DNA could be approximated as a straight rod. Many instances, however, have been reported in which the helical axis is curved. We have devised a simple method for selective identification of DNA segments containing a sequence-directed bend (curvature), by means of a two-dimensional polyacrylamide gel electrophoresis. In order to gain general insights into the structural features and the functional significance of sequence-directed bends, a bank of plasmids carrying bent DNA inserts from the Saccharomyces cerevisiae total genomic DNA was constructed. Primary characterizations of a set of bent DNA segments randomly cloned from S. cerevisiae are presented. One of the cloned DNA segments appears to be derived from a yeast plasmid, the 2 microns circle DNA.

MeSH Terms
Base Sequence Cloning, Molecular DNA, Circular/genetics DNA, Fungal/genetics Escherichia coli/genetics Molecular Sequence Data Nucleic Acid Conformation Plasmids Saccharomyces cerevisiae/genetics
Chemicals
DNA, Circular DNA, Fungal
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Mizuno T
Laboratory of Microbiology, School of Agriculture, Nagoya University, Japan.
Itoh K
References (24)
24 references, click to expand
  1. Sequence-induced DNA curvature at the bacteriophage lambda origin of replication.
    Nature. 1985 Oct 3-9;317(6036):451-3 PMID: 2995831
  2. Bent DNA at a yeast autonomously replicating sequence.
    Nature. 1986 Nov 6-12;324(6092):87-9 PMID: 3785376
  3. Autoregulation of 2 micron circle gene expression provides a model for maintenance of stable plasmid copy levels.
    Cell. 1988 Jan 15;52(1):27-37 PMID: 2449970
  4. Static bend of DNA helix at the activator recognition site of the ompF promoter in Escherichia coli.
    Gene. 1987;54(1):57-64 PMID: 3301541
  5. Signals for transcription initiation and termination in the Saccharomyces cerevisiae plasmid 2 micron circle.
    Mol Cell Biol. 1985 Oct;5(10):2770-80 PMID: 3915534
  6. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  7. A highly bent fragment of Crithidia fasciculata kinetoplast DNA.
    J Biol Chem. 1986 Aug 25;261(24):11302-9 PMID: 3015964
  8. Nucleotide sequence of the yeast plasmid.
    Nature. 1980 Aug 28;286(5776):860-5 PMID: 6251374
  9. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  10. Bent helical structure in kinetoplast DNA.
    Proc Natl Acad Sci U S A. 1982 Dec;79(24):7664-8 PMID: 16593261
  11. An altered DNA conformation in origin region I is a determinant for the binding of SV40 large T antigen.
    Cell. 1986 Mar 14;44(5):719-25 PMID: 3004744
  12. A rapid alkaline extraction procedure for screening recombinant plasmid DNA.
    Nucleic Acids Res. 1979 Nov 24;7(6):1513-23 PMID: 388356
  13. Temperature and salt dependence of the gel migration anomaly of curved DNA fragments.
    Nucleic Acids Res. 1987 Jan 12;15(1):247-65 PMID: 3029673
  14. Antagonistic controls regulate copy number of the yeast 2 mu plasmid.
    EMBO J. 1987 Dec 20;6(13):4205-12 PMID: 2832156
  15. DNA bending at adenine . thymine tracts.
    Nature. 1986 Apr 10-16;320(6062):501-6 PMID: 3960133
  16. The terminus of SV40 DNA replication and transcription contains a sharp sequence-directed curve.
    Cell. 1988 Feb 26;52(4):535-44 PMID: 2830026
  17. Random cloning of bent DNA segments from Escherichia coli chromosome and primary characterization of their structures.
    Nucleic Acids Res. 1987 Sep 11;15(17):6827-41 PMID: 3309887
  18. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  19. Estimation of wedge components in curved DNA.
    Nature. 1987 Apr 16-22;326(6114):720-2 PMID: 3561514
  20. The integration host factor of Escherichia coli binds to bent DNA at the origin of replication of the plasmid pSC101.
    Cell. 1987 Jun 5;49(5):709-17 PMID: 3555843
  21. Direct evidence for DNA bending at the lambda replication origin.
    Science. 1987 Apr 24;236(4800):416-22 PMID: 2951850
  22. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
  23. Conformational change in the DNA associated with an unusual promoter mutation in a tRNA operon of Salmonella.
    Cell. 1984 Dec;39(3 Pt 2):643-52 PMID: 6096016
  24. DNA determinants of rRNA synthesis in E. coli: growth rate dependent regulation, feedback inhibition, upstream activation, antitermination.
    Cell. 1986 Jan 17;44(1):197-205 PMID: 2416474
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1988-10-00
Pages
249-56
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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