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PMID: 3025876 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Evolution of the genus Leishmania as revealed by comparisons of nuclear DNA restriction fragment patterns.

Beverley SM, Ismach RB, Pratt DM

Abstract

Restriction endonuclease DNA fragment patterns have been used to examine the relationships among 28 isolates of Leishmania as well as Crithidia, Endotrypanum, and Trypanosoma cruzi. Fragments of nuclear DNA were generated with six restriction enzymes, and blots were hybridized with probes from three loci. Among the major lineages the fragment patterns are essentially completely different, while within the major lineages various degrees of divergence are found. Molecular evolutionary trees were constructed using the method of Nei and Li to estimate the percent nucleotide sequence divergence among strains from the fraction of fragments shared. Defined groups, such as species or subspecies within the major lineages, are also grouped by nuclear DNA comparisons. Within the donovani complex, we find Leishmania donovani chagasi and Leishmania donovani infantum to be as similar as strains within Leishmania donovani donovani, consistent with the proposal by other workers that New World visceral leishmaniasis originated quite recently.

MeSH Terms
Animals Biological Evolution Cell Nucleus/analysis DNA/genetics DNA Restriction Enzymes Leishmania/genetics Nucleic Acid Hybridization Species Specificity
Chemicals
DNA DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Beverley S M
Ismach R B
Pratt D M
References (45)
45 references, click to expand
  1. Construction of phylogenetic trees.
    Science. 1967 Jan 20;155(3760):279-84 PMID: 5334057
  2. Characterization of Leishmania spp. by isozyme electrophoresis.
    Am J Trop Med Hyg. 1980 Mar;29(2):199-208 PMID: 7369438
  3. Evolution at two levels in humans and chimpanzees.
    Science. 1975 Apr 11;188(4184):107-16 PMID: 1090005
  4. Standard error of immunological dating of evolutionary time.
    J Mol Evol. 1977 May 13;9(3):203-11 PMID: 864723
  5. Estimation of DNA sequence divergence from comparison of restriction endonuclease digests.
    Nucleic Acids Res. 1977;4(5):1257-65 PMID: 896461
  6. Biochemical evolution.
    Annu Rev Biochem. 1977;46:573-639 PMID: 409339
  7. Relationship of amplified dihydrofolate reductase genes to double minute chromosomes in unstably resistant mouse fibroblast cell lines.
    Mol Cell Biol. 1981 Dec;1(12):1077-83 PMID: 6287217
  8. Monoclonal antibodies to Leishmania tropica major: specificities and antigen location.
    Parasitology. 1982 Dec;85 (Pt 3):523-31 PMID: 6184664
  9. Rapid identification of Leishmania species by specific hybridization of kinetoplast DNA in cutaneous lesions.
    Proc Natl Acad Sci U S A. 1982 Nov;79(22):6999-7003 PMID: 6960359
  10. Overproduction of a bifunctional thymidylate synthetase-dihydrofolate reductase and DNA amplification in methotrexate-resistant Leishmania tropica.
    Proc Natl Acad Sci U S A. 1983 Apr;80(8):2132-6 PMID: 6572966
  11. Identification of Leishmania spp. by multiple isozyme analysis.
    Am J Trop Med Hyg. 1983 Jul;32(4):703-15 PMID: 6881418
  12. Maximum likelihood estimation of the number of nucleotide substitutions from restriction sites data.
    Genetics. 1983 Sep;105(1):207-17 PMID: 6311668
  13. DNA restriction fragment length polymorphisms and heterozygosity in the human genome.
    Hum Genet. 1984;66(1):1-16 PMID: 6321327
  14. The phylogeny of the hominoid primates, as indicated by DNA-DNA hybridization.
    J Mol Evol. 1984;20(1):2-15 PMID: 6429338
  15. Number and evolutionary conservation of alpha- and beta-tubulin and cytoplasmic beta- and gamma-actin genes using specific cloned cDNA probes.
    Cell. 1980 May;20(1):95-105 PMID: 6893015
  16. Characterization of pathogenic trypanosomatidae by restriction endonuclease fingerprinting of kinetoplast DNA minicircles.
    Am J Trop Med Hyg. 1980 Sep;29(5 Suppl):1070-4 PMID: 6254386
  17. Possible origins of Leishmania chagasi.
    Ann Trop Med Parasitol. 1980 Oct;74(5):563-5 PMID: 7469570
  18. Monoclonal antibodies that distinguish between New World species of Leishmania.
    Nature. 1981 Jun 18;291(5816):581-3 PMID: 6787433
  19. Biochemical identification of cutaneous leishmanias by analysis of kinetoplast DNA. II. Sequence homologies in Leishmania kDNA.
    Mol Biochem Parasitol. 1981 May;3(1):47-56 PMID: 6265774
  20. [Ecology of leishmaniasis in southern France. 16. Contribution to the chemotaxonomy of parasites of Mediterranean visceral leishmaniasis. Apropos of 55 strains isolated in the Cévennes, Cote d'Azur, Corsica and Tunisia].
    Ann Parasitol Hum Comp. 1981;56(2):131-46 PMID: 7259002
  21. DNA polymorphism detectable by restriction endonucleases.
    Genetics. 1981 Jan;97(1):145-63 PMID: 6266912
  22. Leishmaniasis in Brazil: XV. Biochemical distinction of Leishmania mexicana amazonensis, L. braziliensis braziliensis and L. braziliensis guyanensis--aetiological agents of cutaneous leishmaniasis in the Amazon Basin of Brazil.
    Trans R Soc Trop Med Hyg. 1981;75(4):524-9 PMID: 7324127
  23. [The application of a numerical method to the taxonomy of the genus Leishmania Ross, 1903,--The recognition of 146 original lines in the Old World. Use of allozymic characters. Epidemiological and phyletic significance (author's transl)].
    Ann Parasitol Hum Comp. 1981;56(6):575-91 PMID: 7337375
  24. Stage-specific, strain-specific, and cross-reactive antigens of Leishmania species identified by monoclonal antibodies.
    Infect Immun. 1982 Jul;37(1):28-33 PMID: 6179879
  25. Unstable DNA amplifications in methotrexate-resistant Leishmania consist of extrachromosomal circles which relocalize during stabilization.
    Cell. 1984 Sep;38(2):431-9 PMID: 6467372
  26. Strong doublet preferences in nucleotide sequences and DNA geometry.
    J Mol Evol. 1984;20(2):111-9 PMID: 6433029
  27. Evolutionary relatedness of Plasmodium species as determined by the structure of DNA.
    Science. 1984 Aug 24;225(4664):808-11 PMID: 6382604
  28. Structure and arrangement of the beta-tubulin genes of Leishmania tropica.
    Mol Cell Biol. 1984 Jul;4(7):1372-83 PMID: 6095066
  29. Sequences of six genes and several open reading frames in the kinetoplast maxicircle DNA of Leishmania tarentolae.
    J Biol Chem. 1984 Dec 25;259(24):15136-47 PMID: 6096360
  30. [A new enzymatic variant of Leishmania infantum Nicolle, 1908, agent of cutaneous leishmaniasis in northern Algeria].
    Ann Parasitol Hum Comp. 1985;60(1):1-3 PMID: 3985532
  31. Mucocutaneous leishmaniasis in Colombia: Leishmania braziliensis subspecies diversity.
    Am J Trop Med Hyg. 1985 Jul;34(4):714-20 PMID: 4025684
  32. Rates of nuclear DNA evolution in pheasant-like birds: evidence from restriction maps.
    Proc Natl Acad Sci U S A. 1986 Feb;83(3):688-92 PMID: 3003745
  33. Evolutionary diversity of eukaryotic small-subunit rRNA genes.
    Proc Natl Acad Sci U S A. 1986 Mar;83(5):1383-7 PMID: 2419907
  34. Rates of DNA sequence evolution differ between taxonomic groups.
    Science. 1986 Mar 21;231(4744):1393-8 PMID: 3082006
  35. The use of DNA hybridization and numerical taxonomy in determining relationships between Trypanosoma brucei stocks and subspecies.
    Parasitology. 1986 Feb;92 ( Pt 1):31-50 PMID: 3960593
  36. Subcellular and taxonomic specificity of monoclonal antibodies to New World Leishmania.
    Am J Trop Med Hyg. 1985 Nov;34(6):1085-94 PMID: 2422966
  37. The potential of using recombinant DNA species-specific probes for the identification of tropical Leishmania.
    Parasitology. 1986;92 Suppl:S139-74 PMID: 3012443
  38. Leishmania in the Old World: 2. Heterogeneity among L. tropica zymodemes.
    Trans R Soc Trop Med Hyg. 1986;80(1):113-9 PMID: 3726972
  39. Leishmania in the Old World: 1. The geographical and hostal distribution of L. major zymodemes.
    Trans R Soc Trop Med Hyg. 1986;80(1):99-112 PMID: 3727004
  40. Structure and evolution of the small subunit ribosomal RNA gene of Crithidia fasciculata.
    Curr Genet. 1986;10(5):405-10 PMID: 2832072
  41. A comparative description of mitochondrial DNA differentiation in selected avian and other vertebrate genera.
    Mol Biol Evol. 1985 Mar;2(2):109-25 PMID: 3870856
  42. Construction of phylogenetic trees for proteins and nucleic acids: empirical evaluation of alternative matrix methods.
    J Mol Evol. 1978 Jun 20;11(2):129-42 PMID: 671561
  43. The single-copy DNA sequence polymorphism of the sea urchin Strongylocentrotus purpuratus.
    Cell. 1978 Dec;15(4):1175-86 PMID: 728997
  44. Mathematical model for studying genetic variation in terms of restriction endonucleases.
    Proc Natl Acad Sci U S A. 1979 Oct;76(10):5269-73 PMID: 291943
  45. Distinguishing homologous from analogous proteins.
    Syst Zool. 1970 Jun;19(2):99-113 PMID: 5449325
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1987-01-00
Pages
484-8
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC304233
Subset
IM
Grants
NIAID NIH HHS · AI 21049-02 · United States
NIAID NIH HHS · AI 21903-02 · United States
NIAID NIH HHS · AI 23004-01 · United States
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