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PMID: 3016662 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Mechanism of autonomous control of the Escherichia coli F plasmid: different complexes of the initiator/repressor protein are bound to its operator and to an F plasmid replication origin.

Nucleic acids research ·Vol. 14 ·No. 14 ·1986-07-25 ·Pages 5693-711

Masson L, Ray DS

Abstract

E protein, the 29 kd product of the F plasmid repE gene, plays both positive and negative roles in the autoregulation of F replication. We have cloned and expressed the repE gene in an inducible ATG-fusion vector and have detected specific binding of E protein to the repE operator and to four 19-base pair direct repeats (incB) within the F plasmid replication origin ori2. Binding of E protein at the repE operator occurs with higher affinity than at ori2(incB) and gives almost complete protection to at least 30 base pairs, whereas binding of E protein to the direct repeats in the ori2 region shows an alternating pattern of enhanced and reduced sensitivity to DNAase cleavage consistent with a protein-induced folding of the DNA. These results provide direct biochemical support for a model of F plasmid replication in which the E protein serves both as an initiator of replication and as an autorepressor of its own synthesis.

MeSH Terms
Base Sequence Coliphages/genetics DNA Replication DNA Restriction Enzymes DNA, Viral/genetics,isolation & purification Escherichia coli/genetics F Factor Operon Peptide Initiation Factors/metabolism Promoter Regions, Genetic Repressor Proteins/metabolism Transcription Factors/metabolism
Chemicals
DNA, Viral Peptide Initiation Factors Repressor Proteins Transcription Factors DNA Restriction Enzymes
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Masson L
Ray D S
References (36)
36 references, click to expand
  1. Relationship between chromosome replication and F'lac episome replication in Escherichia coli.
    J Mol Biol. 1973 Jun 25;78(1):143-55 PMID: 4581290
  2. A review of mini-F plasmid maintenance.
    Plasmid. 1985 Jul;14(1):1-16 PMID: 3898165
  3. Elution of DNA from agarose gels after electrophoresis.
    Methods Enzymol. 1979;68:176-82 PMID: 232211
  4. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  5. Construction and characterization of new coliphage M13 cloning vectors.
    Gene. 1980 Nov;11(3-4):207-18 PMID: 6260570
  6. Replication and incompatibility of F and plasmids in the IncFI Group.
    Plasmid. 1981 Jan;5(1):100-26 PMID: 7012871
  7. Replication control and switch-off function as observed with a mini-F factor plasmid.
    J Bacteriol. 1981 Aug;147(2):509-16 PMID: 7021532
  8. Nine unique repeating sequences in a region essential for replication and incompatibility of the mini-F plasmid.
    Gene. 1981 Nov;15(2-3):257-71 PMID: 7028572
  9. Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis.
    Nucleic Acids Res. 1981 Dec 11;9(23):6505-25 PMID: 6275366
  10. Detection and mapping of six miniF-encoded proteins by cloning analysis of dissected miniF segments.
    Mol Gen Genet. 1982;186(2):193-203 PMID: 7050629
  11. Separation of the minimal replication region of the F plasmid into a replication origin segment and a trans-acting segment.
    Mol Gen Genet. 1982;186(3):372-7 PMID: 6750320
  12. Primary structure of the replication initiation protein of plasmid R6K.
    Proc Natl Acad Sci U S A. 1982 Sep;79(18):5475-9 PMID: 6291046
  13. An Mr 29000 protein is essential for mini-F maintenance in E. coli.
    Gene. 1982 Sep;19(2):173-8 PMID: 6293926
  14. Two functions of the E protein are key elements in the plasmid F replication control system.
    J Bacteriol. 1985 Dec;164(3):1262-70 PMID: 2999077
  15. Conformational changes in a replication origin induced by an initiator protein.
    Cell. 1985 Nov;43(1):189-97 PMID: 3000600
  16. An RNA polymerase II transcription factor binds to an upstream element in the adenovirus major late promoter.
    Cell. 1985 Dec;43(2 Pt 1):439-48 PMID: 4075400
  17. Cooperative binding of lambda repressors to sites separated by integral turns of the DNA helix.
    Cell. 1986 Mar 14;44(5):681-7 PMID: 3948245
  18. An altered DNA conformation in origin region I is a determinant for the binding of SV40 large T antigen.
    Cell. 1986 Mar 14;44(5):719-25 PMID: 3004744
  19. DNA bending and its relation to nucleosome positioning.
    J Mol Biol. 1985 Dec 20;186(4):773-90 PMID: 3912515
  20. Plasmid R6K DNA replication. I. Complete nucleotide sequence of an autonomously replicating segment.
    J Mol Biol. 1982 Oct 15;161(1):33-43 PMID: 6759660
  21. Partition mechanism of F plasmid: two plasmid gene-encoded products and a cis-acting region are involved in partition.
    Cell. 1983 Feb;32(2):351-60 PMID: 6297791
  22. Role of nine repeating sequences of the mini-F genome for expression of F-specific incompatibility phenotype and copy number control.
    J Bacteriol. 1983 Jul;155(1):337-44 PMID: 6305917
  23. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors.
    Methods Enzymol. 1983;100:468-500 PMID: 6225933
  24. P1 plasmid replication: replicon structure.
    J Mol Biol. 1984 Mar 5;173(3):307-24 PMID: 6699914
  25. Regulated expression of a gene important for replication of plasmid F in E. coli.
    EMBO J. 1984 Feb;3(2):257-62 PMID: 6325163
  26. Complete nucleotide sequence of mini-Rts1 and its copy mutant.
    J Bacteriol. 1984 Apr;158(1):307-12 PMID: 6325393
  27. A 37 X 10(3) molecular weight plasmid-encoded protein is required for replication and copy number control in the plasmid pSC101 and its temperature-sensitive derivative pHS1.
    J Mol Biol. 1984 May 25;175(3):331-48 PMID: 6327996
  28. DNA sequence of an amber replication mutant indicates that a 29 kd protein is the product of the F plasmid replication gene.
    Mol Gen Genet. 1984;194(1-2):337-9 PMID: 6203015
  29. The dnaA protein complex with the E. coli chromosomal replication origin (oriC) and other DNA sites.
    Cell. 1984 Oct;38(3):889-900 PMID: 6091903
  30. An essential replication gene, repA, of plasmid pSC101 is autoregulated.
    J Mol Biol. 1985 Feb 5;181(3):383-93 PMID: 2984435
  31. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  32. Replication initiator protein of plasmid R6K autoregulates its own synthesis at the transcriptional step.
    Proc Natl Acad Sci U S A. 1985 May;82(9):2574-8 PMID: 3857600
  33. A two-stage molecular model for control of mini-F replication.
    Plasmid. 1985 Jan;13(1):59-69 PMID: 2986188
  34. Autorepressor properties of the pi-initiation protein encoded by plasmid R6K.
    Nucleic Acids Res. 1985 Jan 11;13(1):103-14 PMID: 3923429
  35. High-level expression of M13 gene II protein from an inducible polycistronic messenger RNA.
    Gene. 1985;34(2-3):137-45 PMID: 4007491
  36. DNAse footprinting: a simple method for the detection of protein-DNA binding specificity.
    Nucleic Acids Res. 1978 Sep;5(9):3157-70 PMID: 212715
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1986-07-25
Pages
5693-711
Language
English
Region
England
NLM ID
0411011
PMCID
PMC311586
Subset
IM
Grants
NIAID NIH HHS · AI10752 · United States
NCI NIH HHS · CA16042 · United States
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