Home LiteratureArticle Details
PMID: 3012283 Published · ppublish English Journal Article

A 2.6 kb DNA sequence of Streptomyces coelicolor A3(2) which functions as a transposable element.

Molecular & general genetics : MGG ·Vol. 203 ·No. 1 ·1986-04-00 ·Pages 79-88

Lydiate DJ, Ikeda H, Hopwood DA

Abstract

Streptomyces coelicolor A3(2) contains CCC DNA molecules, 2.6 kb in size, with an average copy number of less than one per ten chromosomes. Southern hybridisation revealed, in addition, two linear, integrated copies (A and B) of this "mini-circle" sequence per chromosome. The two integrated copies have similar (if not identical) ends and are present in the same locations in various S. coelicolor A3(2) derivatives. The mini-circle sequence is absent from S. lividans 66 and S. violaceolatus ISP5438 and from several Streptomyces species less closely related to S. coelicolor A3(2). None of a variety of Streptomyces plasmids tested contained homology to the mini-circle sequence. When a 1.8 kb fragment of the mini-circle lacking the ends of the integrated copies was inserted into KC515 (a derivative of the temperate phage phi C31 which is unable to lysogenise host strains by the natural route because the phage attachment site has been deleted) the resulting phage lysogenized S. coelicolor A3(2) (integrating into the genome of this host by homologous recombination with resident minicircle sequences) but not S. lividans or a variety of other phi C31 hosts. In contrast, a KC515 derivative (KC591) carrying the entire 2.6 kb mini-circle sequence linearized at its single BclI site (and therefore containing the integration site of the free mini-circle) lysogenized not only S. coelicolor A3(2) but also S. lividans 66 and most other strains normally lysogenized by phi C31. The KC591 lysogens of the eight Streptomyces species tested contained a linear, integrated prophage with termini apparently identical to those of the linear mini-circle copies of S. coelicolor.(ABSTRACT TRUNCATED AT 250 WORDS)

MeSH Terms
Base Composition Base Sequence Coliphages/genetics DNA Restriction Enzymes DNA Transposable Elements DNA, Bacterial/genetics Escherichia coli/genetics Streptomyces/genetics
Chemicals
DNA Transposable Elements DNA, Bacterial DNA Restriction Enzymes
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Lydiate D J
Ikeda H
Hopwood D A
References (54)
54 references, click to expand
  1. TYROSINASE INHERITANCE IN STREPTOMYCES SCABIES. II. INDUCTION OF TYROSINASE DEFICIENCY BY ACRIDINE DYES.
    J Bacteriol. 1964 Jun;87:1287-94 PMID: 14188704
  2. A DNA cloning system for interspecies gene transfer in antibiotic-producing Streptomyces.
    Nature. 1980 Apr 10;284(5756):526-31 PMID: 7366721
  3. pIJ101, a multi-copy broad host-range Streptomyces plasmid: functional analysis and development of DNA cloning vectors.
    Mol Gen Genet. 1982;185(2):223-8 PMID: 6283316
  4. Transposition of elements of the 412, copia and 297 dispersed repeated gene families in Drosophila.
    Cell. 1979 Jun;17(2):415-27 PMID: 110463
  5. Evidence for transposition of dispersed repetitive DNA families in yeast.
    Cell. 1979 Apr;16(4):739-51 PMID: 378399
  6. Transposable elements in prokaryotes.
    Annu Rev Genet. 1981;15:341-404 PMID: 6279020
  7. Cloning of antibiotic resistance and nutritional genes in streptomycetes.
    J Bacteriol. 1982 Aug;151(2):668-77 PMID: 6284706
  8. Genetic studies on SCP1-prime strains of Streptomyces coelicolor A3(2).
    J Gen Microbiol. 1976 Jul;95(1):107-20 PMID: 956772
  9. The glycerol utilization operon of Streptomyces coelicolor: genetic mapping of gyl mutations and the analysis of cloned gylDNA.
    Mol Gen Genet. 1984;193(1):119-28 PMID: 6318046
  10. Nucleotide sequence analysis of the chloramphenicol resistance transposon Tn9.
    Nature. 1979 Dec 20-27;282(5741):864-9 PMID: 390403
  11. Conjugal transfer system of plasmid RP4: analysis by transposon 7 insertion.
    J Bacteriol. 1978 Jan;133(1):43-52 PMID: 338595
  12. Characterization of temperate actinophage phi C31 isolated from Streptomyces coelicolor A3(2).
    J Virol. 1972 Feb;9(2):258-62 PMID: 5014931
  13. Integrated DNA sequences in three streptomycetes form related autonomous plasmids after transfer to Streptomyces lividans.
    Plasmid. 1984 Jan;11(1):1-16 PMID: 6369354
  14. Characterization of insertions affecting the expression of the bacterio-opsin gene in Halobacterium halobium.
    Nucleic Acids Res. 1984 Mar 12;12(5):2489-97 PMID: 6324122
  15. Control of Tn7 transposition.
    Mol Gen Genet. 1984;194(1-2):149-58 PMID: 6328211
  16. Plasmid formation in Streptomyces: excision and integration of the SLP1 replicon at a specific chromosomal site.
    Mol Gen Genet. 1984;196(3):429-38 PMID: 6094971
  17. Transposition of Tn554 does not generate a target duplication.
    Nature. 1984 Jan 19-25;307(5948):292-4 PMID: 6320000
  18. Plasmids in different strains of Streptomyces ambofaciens: free and integrated form of plasmid pSAM2.
    Mol Gen Genet. 1984;198(2):35-41 PMID: 6596483
  19. The expression of Streptomyces and Escherichia coli drug-resistance determinants cloned into the Streptomyces phage phi C31.
    Gene. 1982 Jul-Aug;19(1):21-32 PMID: 6292047
  20. Small DNA-free liposomes stimulate transfection of streptomyces protoplasts.
    J Bacteriol. 1982 Sep;151(3):1078-85 PMID: 7107552
  21. Prolonged incubation in calcium chloride improves the competence of Escherichia coli cells.
    Gene. 1979 May;6(1):23-8 PMID: 383576
  22. The Streptomyces plasmid SCP2*: its functional analysis and development into useful cloning vectors.
    Gene. 1985;35(3):223-35 PMID: 2995202
  23. Construction and characterization of new cloning vehicles. IV. Deletion derivatives of pBR322 and pBR325.
    Gene. 1980 May;9(3-4):287-305 PMID: 6248430
  24. Genetic transposition and insertional mutagenesis in Bacillus subtilis with Streptococcus faecalis transposon Tn917.
    Proc Natl Acad Sci U S A. 1983 Apr;80(8):2305-9 PMID: 6300908
  25. Genetic mapping, cloning and physiological aspects of the glucose kinase gene of Streptomyces coelicolor.
    Mol Gen Genet. 1984;196(3):501-7 PMID: 6094978
  26. Unique insertion site of Tn7 in the E. coli chromosome.
    Nature. 1982 Jun 17;297(5867):601-3 PMID: 6283361
  27. Barbara McClintock's controlling elements: now at the DNA level.
    Cell. 1984 Dec;39(2 Pt 1):253-9 PMID: 6094008
  28. Physical and genetic analysis of IS110, a transposable element of Streptomyces coelicolor A3(2).
    Mol Gen Genet. 1985;200(2):235-9 PMID: 2993819
  29. DNA cloning in Streptomyces: resistance genes from antibiotic-producing species.
    Nature. 1980 Jul 31;286(5772):525-7 PMID: 6250070
  30. Transposable elements.
    Cell. 1980 Jul;20(3):579-95 PMID: 6251969
  31. pBR322 restriction map derived from the DNA sequence: accurate DNA size markers up to 4361 nucleotide pairs long.
    Nucleic Acids Res. 1978 Aug;5(8):2721-8 PMID: 358147
  32. Excision of chromosomal DNA sequences from Streptomyces coelicolor forms a novel family of plasmids detectable in Streptomyces lividans.
    Mol Gen Genet. 1981;184(2):230-40 PMID: 6948998
  33. New map of bacteriophage lambda DNA.
    J Virol. 1980 Jan;33(1):390-400 PMID: 6245240
  34. Plasmids, recombination and chromosome mapping in Streptomyces lividans 66.
    J Gen Microbiol. 1983 Jul;129(7):2257-69 PMID: 6631413
  35. A transposon in Streptococcus faecalis with fertility properties.
    Nature. 1982 Nov 18;300(5889):281-4 PMID: 6292725
  36. Insertion of eukaryotic DNA into the Bacillus subtilis genome by means of a temperature-sensitive plasmid vector.
    Gene. 1985;34(1):39-46 PMID: 3924736
  37. Transduction of linked genetic characters of the host by bacteriophage P1.
    Virology. 1955 Jul;1(2):190-206 PMID: 13267987
  38. Identification of a sex-factor-affinity site in E. coli as gamma delta.
    Cold Spring Harb Symp Quant Biol. 1981;45 Pt 1:135-40 PMID: 6271456
  39. Lambdoid phages that simplify the recovery of in vitro recombinants.
    Mol Gen Genet. 1977 Jan 7;150(1):53-61 PMID: 319344
  40. Construction and characterization of new cloning vehicles. II. A multipurpose cloning system.
    Gene. 1977;2(2):95-113 PMID: 344137
  41. Gel electrophoresis of restriction fragments.
    Methods Enzymol. 1979;68:152-76 PMID: 232210
  42. IS2-IS2 and IS3-IS3 relative recombination frequencies in F integration.
    Plasmid. 1980 Jan;3(1):48-64 PMID: 6278524
  43. Advances in Streptomyces coelicolor genetics.
    Bacteriol Rev. 1973 Sep;37(3):371-405 PMID: 4585795
  44. Physical analysis of antibiotic-resistance genes from Streptomyces and their use in vector construction.
    Gene. 1982 Nov;20(1):51-62 PMID: 6298066
  45. Tn554: isolation and characterization of plasmid insertions.
    Plasmid. 1981 May;5(3):292-305 PMID: 6267632
  46. Viral integration and excision: structure of the lambda att sites.
    Science. 1977 Sep 16;197(4309):1147-60 PMID: 331474
  47. New derivatives of the Streptomyces temperate phage phi C31 useful for the cloning and functional analysis of Streptomyces DNA.
    Gene. 1985;34(2-3):283-92 PMID: 2989111
  48. Gene cloning in Streptomyces.
    Curr Top Microbiol Immunol. 1982;96:69-95 PMID: 6276096
  49. The DNA sequence of an IS/-flanked transposon coding for resistance to chloramphenicol and fusidic acid.
    FEBS Lett. 1980 Jan 28;110(1):11-4 PMID: 7353655
  50. Small-scale techniques for the analysis of recombinant plasmids.
    J Biochem Biophys Methods. 1979 Oct;1(5):299-308 PMID: 233238
  51. A new kind of fertility variant in Streptomyces coelicolor.
    Genetics. 1969 Jul;62(3):461-77 PMID: 5384479
  52. Characterization of a bacteriophage virulent for Streptomyces coelicolor A3(2).
    J Gen Microbiol. 1973 May;76(1):163-76 PMID: 4124710
  53. A physical and functional analysis of Tn917, a Streptococcus transposon in the Tn3 family that functions in Bacillus.
    Plasmid. 1984 Sep;12(2):119-38 PMID: 6095351
  54. Restriction of a bacteriophage of Streptomyces albus G involving endonuclease SalI.
    J Bacteriol. 1976 Nov;128(2):644-50 PMID: 977549
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1986-04-00
Pages
79-88
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com