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PMID: 2995982 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Use of a protein-blotting procedure and a specific DNA probe to identify nuclear proteins that recognize the promoter region of the transferrin receptor gene.

Miskimins WK, Roberts MP, McClelland A, Ruddle FH

Abstract

We describe a procedure for detecting high-affinity, sequence-specific DNA-binding proteins from crude nuclear extracts. The technique utilizes electrophoretic transfer of NaDodSO4/PAGE-fractionated proteins onto nitrocellulose filters. Incubation of the filters with a 5% (wt/vol) solution of nonfat dry milk effectively blocks nonspecific and low-affinity DNA-binding sites. Incubation of the blocked filters with radiolabeled DNA under optimal binding conditions and subsequent autoradiography reveals high-affinity DNA-protein interactions. We have used this procedure to identify proteins that bind specifically to the promoter region of the transferrin receptor gene.

MeSH Terms
Base Sequence Cell Line DNA/metabolism DNA-Binding Proteins/metabolism Genes Humans Nucleoproteins/genetics Promoter Regions, Genetic Receptors, Cell Surface/genetics,metabolism Receptors, Transferrin Rhabdomyosarcoma Transferrin/metabolism
Chemicals
DNA-Binding Proteins Nucleoproteins Receptors, Cell Surface Receptors, Transferrin Transferrin DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Miskimins W K
Roberts M P
McClelland A
Ruddle F H
References (31)
31 references, click to expand
  1. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  2. Molecular weight estimation of polypeptides by SDS-polyacrylamide gel electrophoresis: further data concerning resolving power and general considerations.
    Anal Biochem. 1969 Jun;29(3):505-14 PMID: 4183017
  3. Inducibility of transferrin receptors on friend erythroleukemic cells.
    Science. 1977 Aug 5;197(4303):559-61 PMID: 267327
  4. A protein that preferentially binds Drosophila satellite DNA.
    Proc Natl Acad Sci U S A. 1979 Feb;76(2):726-30 PMID: 106393
  5. Faithful transcription of eukaryotic genes by RNA polymerase III in systems reconstituted with purified DNA templates.
    J Biol Chem. 1979 Jul 10;254(13):6163-73 PMID: 447704
  6. The detection of DNA-binding proteins by protein blotting.
    Nucleic Acids Res. 1980 Jan 11;8(1):1-20 PMID: 6243775
  7. A new method for the purification of DNA-binding proteins with sequence specificity.
    Eur J Biochem. 1980 Feb;104(1):5-11 PMID: 6245871
  8. Modulation of cell surface iron transferrin receptors by cellular density and state of activation.
    J Supramol Struct. 1979;11(4):579-86 PMID: 232525
  9. DNA-dependent transcription of adenovirus genes in a soluble whole-cell extract.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):3855-9 PMID: 6933441
  10. A specific transcription factor that can bind either the 5S RNA gene or 5S RNA.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):4170-4 PMID: 7001457
  11. Multiple factors required for accurate initiation of transcription by purified RNA polymerase II.
    J Biol Chem. 1980 Dec 25;255(24):11992-6 PMID: 7440580
  12. Protein component from Drosophila larval nuclei showing sequence specificity for a short region near a major heat-shock protein gene.
    Cell. 1981 May;24(2):321-31 PMID: 6786755
  13. Human cell surface glycoprotein related to cell proliferation is the receptor for transferrin.
    Proc Natl Acad Sci U S A. 1981 May;78(5):3039-43 PMID: 6265934
  14. Ribosomal RNA transcription in vitro is species specific.
    Nature. 1982 Mar 11;296(5853):173-4 PMID: 7063022
  15. Monoclonal antibody to transferrin receptor blocks transferrin binding and inhibits human tumor cell growth in vitro.
    Proc Natl Acad Sci U S A. 1982 Feb;79(4):1175-9 PMID: 6280171
  16. Regulation of transferrin receptor expression in concanavalin A stimulated and Gross virus transformed rat lymphoblasts.
    J Cell Physiol. 1982 Oct;113(1):40-6 PMID: 6290512
  17. Fractionation and reconstitution of factors required for accurate transcription of mammalian ribosomal RNA genes: identification of a species-dependent initiation factor.
    Nucleic Acids Res. 1982 Nov 11;10(21):6659-70 PMID: 7177852
  18. Tissue-specific binding of total and beta-globin genomic deoxyribonucleic acid to non-histone chromosomal proteins from mouse erythropoietic cells.
    Biochemistry. 1982 Nov 23;21(24):6060-5 PMID: 7150543
  19. Formation of stable preinitiation complexes between eukaryotic class B transcription factors and promoter sequences.
    Nature. 1983 Feb 24;301(5902):680-6 PMID: 6828151
  20. Isolation of transcription factors that discriminate between different promoters recognized by RNA polymerase II.
    Cell. 1983 Mar;32(3):669-80 PMID: 6187469
  21. Transferrin receptor induction in mitogen-stimulated human T lymphocytes is required for DNA synthesis and cell division and is regulated by interleukin 2.
    Proc Natl Acad Sci U S A. 1983 Jun;80(11):3494-8 PMID: 6304712
  22. Differential binding of nonhistone chromosomal proteins to the putative mouse origin of replication.
    Biochim Biophys Acta. 1983 Sep 9;740(4):369-72 PMID: 6882766
  23. A Drosophila RNA polymerase II transcription factor contains a promoter-region-specific DNA-binding activity.
    Cell. 1984 Feb;36(2):357-69 PMID: 6537904
  24. Specific factor conferring nuclease hypersensitivity at the 5' end of the chicken adult beta-globin gene.
    Proc Natl Acad Sci U S A. 1984 Jan;81(1):95-9 PMID: 6320177
  25. Anatomy of hypersensitive sites.
    Nature. 1984 May 17-23;309(5965):213-4 PMID: 6325942
  26. Chromatin structure and protein binding in the putative regulatory region of the c-myc gene in Burkitt lymphoma.
    Cell. 1984 Jun;37(2):381-91 PMID: 6327064
  27. Activating protein factor binds in vitro to upstream control sequences in heat shock gene chromatin.
    Nature. 1984 Sep 6-11;311(5981):81-4 PMID: 6472466
  28. Isolation of a protein fraction that binds preferentially to chicken middle repetitive DNA.
    Biochemistry. 1984 Dec 18;23(26):6491-8 PMID: 6543321
  29. Expression and characterization of the human c-myc DNA-binding protein.
    Mol Cell Biol. 1985 Mar;5(3):448-56 PMID: 3887132
  30. DNAase I-hypersensitive sites of chromatin.
    Cell. 1981 Dec;27(3 Pt 2):413-5 PMID: 6101195
  31. DNA binding of the lac repressor.
    J Mol Biol. 1968 Jul 14;34(2):365-8 PMID: 4938552
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1985-10-00
Pages
6741-4
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC390762
Subset
IM
Grants
NIGMS NIH HHS · GM09966 · United States
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