-
Latent enhancers activated by stimulation in differentiated cells.
Cell. 2013 Jan 17;152(1-2):157-71
PMID: 23332752
-
HTSeq--a Python framework to work with high-throughput sequencing data.
Bioinformatics. 2015 Jan 15;31(2):166-9
PMID: 25260700
-
Modulation of angiogenic and inflammatory response in glioblastoma by hypoxia.
PLoS One. 2009 Jun 17;4(6):e5947
PMID: 19536297
-
Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles.
Proc Natl Acad Sci U S A. 2005 Oct 25;102(43):15545-50
PMID: 16199517
-
Microenvironmental regulation of tumor progression and metastasis.
Nat Med. 2013 Nov;19(11):1423-37
PMID: 24202395
-
Selective inhibition of calcineurin-NFAT signaling by blocking protein-protein interaction with small organic molecules.
Proc Natl Acad Sci U S A. 2004 May 18;101(20):7554-9
PMID: 15131267
-
Macrophage plasticity and interaction with lymphocyte subsets: cancer as a paradigm.
Nat Immunol. 2010 Oct;11(10):889-96
PMID: 20856220
-
New guidelines to evaluate the response to treatment in solid tumors. European Organization for Research and Treatment of Cancer, National Cancer Institute of the United States, National Cancer Institute of Canada.
J Natl Cancer Inst. 2000 Feb 2;92 (3):205-16
PMID: 10655437
-
Modeling Adult Gliomas Using RCAS/t-va Technology.
Transl Oncol. 2009 May;2(2):89-95
PMID: 19412424
-
Possible involvement of the M2 anti-inflammatory macrophage phenotype in growth of human gliomas.
J Pathol. 2008 Sep;216(1):15-24
PMID: 18553315
-
Macrophages and therapeutic resistance in cancer.
Cancer Cell. 2015 Apr 13;27(4):462-72
PMID: 25858805
-
Preparing the ground for tissue regeneration: from mechanism to therapy.
Nat Med. 2014 Aug;20(8):857-69
PMID: 25100531
-
Regularization Paths for Generalized Linear Models via Coordinate Descent.
J Stat Softw. 2010;33(1):1-22
PMID: 20808728
-
Induction of macrophage insulin-like growth factor-I expression by the Th2 cytokines IL-4 and IL-13.
J Immunol. 2003 Oct 1;171(7):3550-9
PMID: 14500651
-
Microglial stimulation of glioblastoma invasion involves epidermal growth factor receptor (EGFR) and colony stimulating factor 1 receptor (CSF-1R) signaling.
Mol Med. 2012 May 09;18:519-27
PMID: 22294205
-
Discovery of OSI-906: a selective and orally efficacious dual inhibitor of the IGF-1 receptor and insulin receptor.
Future Med Chem. 2009 Sep;1(6):1153-71
PMID: 21425998
-
Intratumoral heterogeneity of receptor tyrosine kinases EGFR and PDGFRA amplification in glioblastoma defines subpopulations with distinct growth factor response.
Proc Natl Acad Sci U S A. 2012 Feb 21;109(8):3041-6
PMID: 22323597
-
The Molecular Signatures Database (MSigDB) hallmark gene set collection.
Cell Syst. 2015 Dec 23;1(6):417-425
PMID: 26771021
-
Role of the INK4a locus in tumor suppression and cell mortality.
Cell. 1996 Apr 5;85(1):27-37
PMID: 8620534
-
Influence of tumour micro-environment heterogeneity on therapeutic response.
Nature. 2013 Sep 19;501(7467):346-54
PMID: 24048067
-
voom: Precision weights unlock linear model analysis tools for RNA-seq read counts.
Genome Biol. 2014 Feb 03;15(2):R29
PMID: 24485249
-
New insights into the multidimensional concept of macrophage ontogeny, activation and function.
Nat Immunol. 2016 Jan;17(1):34-40
PMID: 26681460
-
STAR: ultrafast universal RNA-seq aligner.
Bioinformatics. 2013 Jan 1;29(1):15-21
PMID: 23104886
-
CSF-1R inhibition alters macrophage polarization and blocks glioma progression.
Nat Med. 2013 Oct;19(10):1264-72
PMID: 24056773
-
The somatic genomic landscape of glioblastoma.
Cell. 2013 Oct 10;155(2):462-77
PMID: 24120142
-
Regulatory roles for cytokine-producing B cells in infection and autoimmune disease.
Curr Dir Autoimmun. 2005;8:25-54
PMID: 15564716
-
Regeneration beyond the glial scar.
Nat Rev Neurosci. 2004 Feb;5(2):146-56
PMID: 14735117
-
Therapeutic targeting of tumor-associated macrophages and microglia in glioblastoma.
Immunotherapy. 2014;6(6):663-6
PMID: 25041027
-
Epithelial stem cells, wound healing and cancer.
Nat Rev Cancer. 2012 Feb 24;12(3):170-80
PMID: 22362215
-
Germinal center B cells constitute a predominant physiological source of IL-4: implication for Th2 development in vivo.
J Immunol. 2002 Apr 1;168(7):3165-72
PMID: 11907068
-
NFAT pulls the strings during CD4+ T helper cell effector functions.
Blood. 2010 Apr 15;115(15):2989-97
PMID: 20103781
-
The Sequence Alignment/Map format and SAMtools.
Bioinformatics. 2009 Aug 15;25(16):2078-9
PMID: 19505943
-
Orally administered colony stimulating factor 1 receptor inhibitor PLX3397 in recurrent glioblastoma: an Ivy Foundation Early Phase Clinical Trials Consortium phase II study.
Neuro Oncol. 2016 Apr;18(4):557-64
PMID: 26449250
-
FK506 controls CD40L-induced systemic autoimmunity in mice.
J Invest Dermatol. 2006 Jun;126(6):1307-15
PMID: 16470176
-
Characteristics of the alternative phenotype of microglia/macrophages and its modulation in experimental gliomas.
PLoS One. 2011;6(8):e23902
PMID: 21901144
-
Targeting tumor-associated macrophages with anti-CSF-1R antibody reveals a strategy for cancer therapy.
Cancer Cell. 2014 Jun 16;25(6):846-59
PMID: 24898549
-
Macrophage plasticity and polarization in tissue repair and remodelling.
J Pathol. 2013 Jan;229(2):176-85
PMID: 23096265
-
The 2007 WHO classification of tumours of the central nervous system.
Acta Neuropathol. 2007 Aug;114(2):97-109
PMID: 17618441
-
Strengths and limitations of the neurosphere culture system.
Mol Neurobiol. 2006 Dec;34(3):153-61
PMID: 17308349
-
Reactive gliosis and the multicellular response to CNS damage and disease.
Neuron. 2014 Jan 22;81(2):229-48
PMID: 24462092
-
Insulin and insulin-like growth factor signalling in neoplasia.
Nat Rev Cancer. 2008 Dec;8(12):915-28
PMID: 19029956
-
The PTEN-regulating microRNA miR-26a is amplified in high-grade glioma and facilitates gliomagenesis in vivo.
Genes Dev. 2009 Jun 1;23 (11):1327-37
PMID: 19487573
-
Cancer drug resistance: an evolving paradigm.
Nat Rev Cancer. 2013 Oct;13(10):714-26
PMID: 24060863
-
Insulin-like growth factor-1 (IGF-1): a neuroprotective trophic factor acting via the Akt kinase pathway.
J Neural Transm Suppl. 2000;(60):261-72
PMID: 11205145
-
Loss of Arf causes tumor progression of PDGFB-induced oligodendroglioma.
Oncogene. 2007 Sep 20;26(43):6289-96
PMID: 17438529
-
DAVID: Database for Annotation, Visualization, and Integrated Discovery.
Genome Biol. 2003;4(5):P3
PMID: 12734009
-
Prognostic and predictive factors in breast cancer by immunohistochemical analysis.
Mod Pathol. 1998 Feb;11(2):155-68
PMID: 9504686
-
Characterization of the mechanism of action of the pan class I PI3K inhibitor NVP-BKM120 across a broad range of concentrations.
Mol Cancer Ther. 2012 Aug;11(8):1747-57
PMID: 22653967
-
Loss of ATM/Chk2/p53 pathway components accelerates tumor development and contributes to radiation resistance in gliomas.
Cancer Cell. 2010 Dec 14;18(6):619-29
PMID: 21156285
-
The role of tumour-associated macrophages in tumour progression: implications for new anticancer therapies.
J Pathol. 2002 Mar;196 (3):254-65
PMID: 11857487
-
Dose-dependent effects of platelet-derived growth factor-B on glial tumorigenesis.
Cancer Res. 2004 Jul 15;64(14):4783-9
PMID: 15256447
-
GSVA: gene set variation analysis for microarray and RNA-seq data.
BMC Bioinformatics. 2013 Jan 16;14:7
PMID: 23323831
-
Structure-Guided Blockade of CSF1R Kinase in Tenosynovial Giant-Cell Tumor.
N Engl J Med. 2015 Jul 30;373(5):428-37
PMID: 26222558
-
TCGA-assembler: open-source software for retrieving and processing TCGA data.
Nat Methods. 2014 Jun;11(6):599-600
PMID: 24874569
-
A novel triple-modality reporter gene for whole-body fluorescent, bioluminescent, and nuclear noninvasive imaging.
Eur J Nucl Med Mol Imaging. 2004 May;31(5):740-51
PMID: 15014901
-
Primary oligodendrocyte death does not elicit anti-CNS immunity.
Nat Neurosci. 2012 Feb 26;15(4):543-50
PMID: 22366759
-
Colony-stimulating factor-1 receptor inhibitors for the treatment of cancer and inflammatory disease.
Curr Top Med Chem. 2009;9(7):599-610
PMID: 19689368
-
Reciprocal regulation of polarized cytokine production by effector B and T cells.
Nat Immunol. 2000 Dec;1(6):475-82
PMID: 11101868
-
The many faces of insulin-like peptide signalling in the brain.
Nat Rev Neurosci. 2012 Mar 20;13(4):225-39
PMID: 22430016
-
TNF Counterbalances the Emergence of M2 Tumor Macrophages.
Cell Rep. 2015 Sep 22;12(11):1902-14
PMID: 26365184
-
Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma.
Mol Syst Biol. 2012;8:605
PMID: 22929615
-
Exploring the full spectrum of macrophage activation.
Nat Rev Immunol. 2008 Dec;8(12):958-69
PMID: 19029990
-
SwissRegulon: a database of genome-wide annotations of regulatory sites.
Nucleic Acids Res. 2007 Jan;35(Database issue):D127-31
PMID: 17130146
-
The role of human glioma-infiltrating microglia/macrophages in mediating antitumor immune responses.
Neuro Oncol. 2006 Jul;8(3):261-79
PMID: 16775224
-
Transforming growth factor-beta and wound healing.
Perspect Vasc Surg Endovasc Ther. 2006 Mar;18(1):55-62
PMID: 16628336
-
A novel STAT6 inhibitor AS1517499 ameliorates antigen-induced bronchial hypercontractility in mice.
Am J Respir Cell Mol Biol. 2009 Nov;41(5):516-24
PMID: 19202006
-
PDGF autocrine stimulation dedifferentiates cultured astrocytes and induces oligodendrogliomas and oligoastrocytomas from neural progenitors and astrocytes in vivo.
Genes Dev. 2001 Aug 1;15(15):1913-25
PMID: 11485986
-
Activation of microglia by aggregated beta-amyloid or lipopolysaccharide impairs MHC-II expression and renders them cytotoxic whereas IFN-gamma and IL-4 render them protective.
Mol Cell Neurosci. 2005 Jul;29(3):381-93
PMID: 15890528
-
ISMARA: automated modeling of genomic signals as a democracy of regulatory motifs.
Genome Res. 2014 May;24(5):869-84
PMID: 24515121
-
mTOR promotes survival and astrocytic characteristics induced by Pten/AKT signaling in glioblastoma.
Neoplasia. 2005 Apr;7(4):356-68
PMID: 15967113
-
Radiotherapy plus concomitant and adjuvant temozolomide for glioblastoma.
N Engl J Med. 2005 Mar 10;352(10 ):987-96
PMID: 15758009
-
The insulin-like growth factor 1 receptor is essential for axonal regeneration in adult central nervous system neurons.
PLoS One. 2013;8(1):e54462
PMID: 23349896
-
Most human non-GCIMP glioblastoma subtypes evolve from a common proneural-like precursor glioma.
Cancer Cell. 2014 Aug 11;26(2):288-300
PMID: 25117714
-
Isolation and direct characterization of resident microglial cells from the normal and inflamed central nervous system.
Proc Natl Acad Sci U S A. 1991 Aug 15;88(16):7438-42
PMID: 1651506
-
Retrograde viral delivery of IGF-1 prolongs survival in a mouse ALS model.
Science. 2003 Aug 8;301(5634):839-42
PMID: 12907804