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PMID: 26347956 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Phospho-selective mechanisms of arrestin conformations and functions revealed by unnatural amino acid incorporation and (19)F-NMR.

Nature communications ·Vol. 6 ·2015-09-08 ·Pages 8202

Yang F, Yu X, Liu C, Qu CX, Gong Z, Liu HD, Li FH, Wang HM, He DF, Yi F, Song C, Tian CL, Xiao KH, Wang JY, Sun JP

Abstract

Specific arrestin conformations are coupled to distinct downstream effectors, which underlie the functions of many G-protein-coupled receptors (GPCRs). Here, using unnatural amino acid incorporation and fluorine-19 nuclear magnetic resonance ((19)F-NMR) spectroscopy, we demonstrate that distinct receptor phospho-barcodes are translated to specific β-arrestin-1 conformations and direct selective signalling. With its phosphate-binding concave surface, β-arrestin-1 'reads' the message in the receptor phospho-C-tails and distinct phospho-interaction patterns are revealed by (19)F-NMR. Whereas all functional phosphopeptides interact with a common phosphate binding site and induce the movements of finger and middle loops, different phospho-interaction patterns induce distinct structural states of β-arrestin-1 that are coupled to distinct arrestin functions. Only clathrin recognizes and stabilizes GRK2-specific β-arrestin-1 conformations. The identified receptor-phospho-selective mechanism for arrestin conformation and the spacing of the multiple phosphate-binding sites in the arrestin enable arrestin to recognize plethora phosphorylation states of numerous GPCRs, contributing to the functional diversity of receptors.

MeSH Terms
Animals Arrestins/genetics,metabolism Binding Sites Blotting, Western Cattle Clathrin/metabolism Escherichia coli Fluorine Fluorine-19 Magnetic Resonance Imaging G-Protein-Coupled Receptor Kinase 2/metabolism G-Protein-Coupled Receptor Kinases/metabolism HEK293 Cells Humans Microscopy, Confocal Mutation Nuclear Magnetic Resonance, Biomolecular Phosphate-Binding Proteins/metabolism Phosphoproteins/metabolism Protein Conformation Receptors, G-Protein-Coupled/metabolism Signal Transduction Tandem Mass Spectrometry Tyrosine/analogs & derivatives,metabolism beta-Arrestin 1 beta-Arrestins
Chemicals
ARRB1 protein, human Arrestins Clathrin Phosphate-Binding Proteins Phosphoproteins Receptors, G-Protein-Coupled beta-Arrestin 1 beta-Arrestins Fluorine 3,5-difluorotyrosine Tyrosine GRK2 protein, human G-Protein-Coupled Receptor Kinase 2 G-Protein-Coupled Receptor Kinases G-protein-coupled receptor kinase 6
Authors & Affiliations
15 authors, click to expand affiliations / ORCID
Yang Fan
Laboratory of Quantum Biophysics and Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, 100101, China. | Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China. | Department of Physiology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
Yu Xiao
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China. | Department of Physiology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
Liu Chuan
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China.
Qu Chang-Xiu
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China.
Gong Zheng
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China.
Liu Hong-Da
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China.
Li Fa-Hui
Laboratory of Quantum Biophysics and Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, 100101, China.
Wang Hong-Mei
Department of Physiology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
He Dong-Fang
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China. | Department of Physiology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
Yi Fan
Department of Pharmacology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
Song Chen
Department of Biochemistry, University of Oxford, Oxford OX13QU, UK.
Tian Chang-Lin
Hefei National Laboratory for Physical Science at Microscale and School of Life Science, University of Science and Technology of China, Hefei, Anhui 230027, China.
Xiao Kun-Hong
Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, Pittsburgh, Pennsylvania 15261, USA. | Department of Medicine, School of Medicine, Duke University, Durham, North Carolina 27705, USA.
Wang Jiang-Yun
Laboratory of Quantum Biophysics and Laboratory of RNA Biology, Institute of Biophysics, Chinese Academy of Sciences, 15 Datun Road, Chaoyang District, 100101, China.
Sun Jin-Peng
Key Laboratory Experimental Teratology of the Ministry of Education and Department of Biochemistry and Molecular Biology, Shandong University School of Medicine, 44 Wenhua Xi Road, Jinan, Shandong 250012, China. | Department of Physiology, Shandong University School of Medicine, Jinan, Shandong 250012, China.
References (63)
63 references, click to expand
  1. A genetically encoded 19F NMR probe for tyrosine phosphorylation.
    Angew Chem Int Ed Engl. 2013 Apr 2;52(14):3958-62 PMID: 23450644
  2. A stress response pathway regulates DNA damage through β2-adrenoreceptors and β-arrestin-1.
    Nature. 2011 Sep 15;477(7364):349-53 PMID: 21857681
  3. The proliferative and antiapoptotic effects of substance P are facilitated by formation of a beta -arrestin-dependent scaffolding complex.
    Proc Natl Acad Sci U S A. 2000 Sep 26;97(20):11086-91 PMID: 10995467
  4. Structure, inhibitor, and regulatory mechanism of Lyp, a lymphoid-specific tyrosine phosphatase implicated in autoimmune diseases.
    Proc Natl Acad Sci U S A. 2007 Dec 11;104(50):19767-72 PMID: 18056643
  5. Scaffolding functions of arrestin-2 revealed by crystal structure and mutagenesis.
    Biochemistry. 2002 Mar 12;41(10):3321-8 PMID: 11876640
  6. Ghrelin receptor conformational dynamics regulate the transition from a preassembled to an active receptor:Gq complex.
    Proc Natl Acad Sci U S A. 2015 Feb 3;112(5):1601-6 PMID: 25605885
  7. GLP-1 inhibits and adrenaline stimulates glucagon release by differential modulation of N- and L-type Ca2+ channel-dependent exocytosis.
    Cell Metab. 2010 Jun 9;11(6):543-53 PMID: 20519125
  8. Structural basis for the recognition of c-Src by its inactivator Csk.
    Cell. 2008 Jul 11;134(1):124-34 PMID: 18614016
  9. Beta-arrestin-dependent formation of beta2 adrenergic receptor-Src protein kinase complexes.
    Science. 1999 Jan 29;283(5402):655-61 PMID: 9924018
  10. Differential G-protein-coupled receptor phosphorylation provides evidence for a signaling bar code.
    J Biol Chem. 2011 Apr 1;286(13):11506-18 PMID: 21177246
  11. Activity-dependent internalization of smoothened mediated by beta-arrestin 2 and GRK2.
    Science. 2004 Dec 24;306(5705):2257-60 PMID: 15618519
  12. Molecular mechanism of β-arrestin-biased agonism at seven-transmembrane receptors.
    Annu Rev Pharmacol Toxicol. 2012;52:179-97 PMID: 21942629
  13. The molecular acrobatics of arrestin activation.
    Trends Pharmacol Sci. 2004 Feb;25(2):105-11 PMID: 15102497
  14. The 2.8 A crystal structure of visual arrestin: a model for arrestin's regulation.
    Cell. 1999 Apr 16;97(2):257-69 PMID: 10219246
  15. beta-arrestin 2 oligomerization controls the Mdm2-dependent inhibition of p53.
    Proc Natl Acad Sci U S A. 2007 Nov 13;104(46):18061-6 PMID: 17984062
  16. The dynamic process of β(2)-adrenergic receptor activation.
    Cell. 2013 Jan 31;152(3):532-42 PMID: 23374348
  17. Functional antagonism of different G protein-coupled receptor kinases for beta-arrestin-mediated angiotensin II receptor signaling.
    Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1442-7 PMID: 15671181
  18. Involvement of distinct arrestin-1 elements in binding to different functional forms of rhodopsin.
    Proc Natl Acad Sci U S A. 2013 Jan 15;110(3):942-7 PMID: 23277586
  19. Biased signaling pathways in β2-adrenergic receptor characterized by 19F-NMR.
    Science. 2012 Mar 2;335(6072):1106-10 PMID: 22267580
  20. Concomitant action of structural elements and receptor phosphorylation determines arrestin-3 interaction with the free fatty acid receptor FFA4.
    J Biol Chem. 2014 Jun 27;289(26):18451-65 PMID: 24817122
  21. A stress response pathway in mice upregulates somatostatin level and transcription in pancreatic delta cells through Gs and β-arrestin 1.
    Diabetologia. 2014 Sep;57(9):1899-910 PMID: 24947582
  22. Targeting of cyclic AMP degradation to beta 2-adrenergic receptors by beta-arrestins.
    Science. 2002 Oct 25;298(5594):834-6 PMID: 12399592
  23. Adding new chemistries to the genetic code.
    Annu Rev Biochem. 2010;79:413-44 PMID: 20307192
  24. Targeted disruption of β-arrestin 2-mediated signaling pathways by aptamer chimeras leads to inhibition of leukemic cell growth.
    PLoS One. 2014;9(4):e93441 PMID: 24736311
  25. β-Arrestin-mediated receptor trafficking and signal transduction.
    Trends Pharmacol Sci. 2011 Sep;32(9):521-33 PMID: 21680031
  26. The active conformation of beta-arrestin1: direct evidence for the phosphate sensor in the N-domain and conformational differences in the active states of beta-arrestins1 and -2.
    J Biol Chem. 2007 Jul 20;282(29):21370-81 PMID: 17513300
  27. The catalytic region and PEST domain of PTPN18 distinctly regulate the HER2 phosphorylation and ubiquitination barcodes.
    Cell Res. 2014 Sep;24(9):1067-90 PMID: 25081058
  28. Regulation of tyrosine kinase activation and granule release through beta-arrestin by CXCRI.
    Nat Immunol. 2000 Sep;1(3):227-33 PMID: 10973280
  29. Conformation of receptor-bound visual arrestin.
    Proc Natl Acad Sci U S A. 2012 Nov 6;109(45):18407-12 PMID: 23091036
  30. Distinct phosphorylation sites on the β(2)-adrenergic receptor establish a barcode that encodes differential functions of β-arrestin.
    Sci Signal. 2011 Aug 9;4(185):ra51 PMID: 21868357
  31. β-Arrestin1-mediated recruitment of c-Src underlies the proliferative action of glucagon-like peptide-1 in pancreatic β INS832/13 cells.
    Mol Cell Endocrinol. 2012 Nov 25;364(1-2):65-70 PMID: 22939843
  32. Site-specific phosphorylation of CXCR4 is dynamically regulated by multiple kinases and results in differential modulation of CXCR4 signaling.
    J Biol Chem. 2010 Mar 5;285(10):7805-17 PMID: 20048153
  33. Ligand-specific regulation of the extracellular surface of a G-protein-coupled receptor.
    Nature. 2010 Jan 7;463(7277):108-12 PMID: 20054398
  34. G-protein-coupled receptor kinase specificity for beta-arrestin recruitment to the beta2-adrenergic receptor revealed by fluorescence resonance energy transfer.
    J Biol Chem. 2006 Jul 21;281(29):20577-88 PMID: 16687412
  35. Distinct conformational changes in beta-arrestin report biased agonism at seven-transmembrane receptors.
    Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9988-93 PMID: 18621717
  36. Visual arrestin activity may be regulated by self-association.
    J Biol Chem. 1999 Jul 23;274(30):21186-90 PMID: 10409673
  37. Major ligand-induced rearrangement of the heptahelical domain interface in a GPCR dimer.
    Nat Chem Biol. 2015 Feb;11(2):134-40 PMID: 25503927
  38. Structural insights into biased G protein-coupled receptor signaling revealed by fluorescence spectroscopy.
    Proc Natl Acad Sci U S A. 2012 Apr 24;109(17):6733-8 PMID: 22493271
  39. BRET analysis of GPCR oligomerization: newer does not mean better.
    Nat Methods. 2007 Jan;4(1):3-4; author reply 4 PMID: 17195017
  40. Functional specialization of beta-arrestin interactions revealed by proteomic analysis.
    Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12011-6 PMID: 17620599
  41. Divergent transducer-specific molecular efficacies generate biased agonism at a G protein-coupled receptor (GPCR).
    J Biol Chem. 2014 May 16;289(20):14211-24 PMID: 24668815
  42. Readout of epigenetic modifications.
    Annu Rev Biochem. 2013;82:81-118 PMID: 23642229
  43. Meningococcus Hijacks a β2-adrenoceptor/β-Arrestin pathway to cross brain microvasculature endothelium.
    Cell. 2010 Dec 23;143(7):1149-60 PMID: 21183077
  44. Structure of active β-arrestin-1 bound to a G-protein-coupled receptor phosphopeptide.
    Nature. 2013 May 2;497(7447):137-41 PMID: 23604254
  45. Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling.
    Mol Syst Biol. 2012;8:590 PMID: 22735336
  46. Transduction of receptor signals by beta-arrestins.
    Science. 2005 Apr 22;308(5721):512-7 PMID: 15845844
  47. An Akt/beta-arrestin 2/PP2A signaling complex mediates dopaminergic neurotransmission and behavior.
    Cell. 2005 Jul 29;122(2):261-73 PMID: 16051150
  48. Dual agonist occupancy of AT1-R-α2C-AR heterodimers results in atypical Gs-PKA signaling.
    Nat Chem Biol. 2015 Apr;11(4):271-9 PMID: 25706338
  49. Mutation of putative GRK phosphorylation sites in the cannabinoid receptor 1 (CB1R) confers resistance to cannabinoid tolerance and hypersensitivity to cannabinoids in mice.
    J Neurosci. 2014 Apr 9;34(15):5152-63 PMID: 24719095
  50. Role of Phosphorylation in the Control of Clathrin-Mediated Internalization of GPCR.
    Int J Cell Biol. 2011;2011:246954 PMID: 21765832
  51. Role of beta-arrestin 1 in the metastatic progression of colorectal cancer.
    Proc Natl Acad Sci U S A. 2006 Jan 31;103(5):1492-7 PMID: 16432186
  52. Global phosphorylation analysis of beta-arrestin-mediated signaling downstream of a seven transmembrane receptor (7TMR).
    Proc Natl Acad Sci U S A. 2010 Aug 24;107(34):15299-304 PMID: 20686112
  53. Beta-arrestin acts as a clathrin adaptor in endocytosis of the beta2-adrenergic receptor.
    Nature. 1996 Oct 3;383(6599):447-50 PMID: 8837779
  54. Different G protein-coupled receptor kinases govern G protein and beta-arrestin-mediated signaling of V2 vasopressin receptor.
    Proc Natl Acad Sci U S A. 2005 Feb 1;102(5):1448-53 PMID: 15671180
  55. Multiple ligand-specific conformations of the β2-adrenergic receptor.
    Nat Chem Biol. 2011 Oct;7(10):692-700 PMID: 21857662
  56. Crystal structure of a common GPCR-binding interface for G protein and arrestin.
    Nat Commun. 2014;5:4801 PMID: 25205354
  57. Emerging paradigms of β-arrestin-dependent seven transmembrane receptor signaling.
    Trends Biochem Sci. 2011 Sep;36(9):457-69 PMID: 21764321
  58. Structure of an arrestin2-clathrin complex reveals a novel clathrin binding domain that modulates receptor trafficking.
    J Biol Chem. 2009 Oct 23;284(43):29860-72 PMID: 19710023
  59. Crystal structure of pre-activated arrestin p44.
    Nature. 2013 May 2;497(7447):142-6 PMID: 23604253
  60. Activation-dependent conformational changes in {beta}-arrestin 2.
    J Biol Chem. 2004 Dec 31;279(53):55744-53 PMID: 15501822
  61. Monitoring agonist-promoted conformational changes of beta-arrestin in living cells by intramolecular BRET.
    EMBO Rep. 2005 Apr;6(4):334-40 PMID: 15776020
  62. Crystal structure of beta-arrestin at 1.9 A: possible mechanism of receptor binding and membrane Translocation.
    Structure. 2001 Sep;9(9):869-80 PMID: 11566136
  63. Visualization of arrestin recruitment by a G-protein-coupled receptor.
    Nature. 2014 Aug 14;512(7513):218-22 PMID: 25043026
Article Info
Journal
Nature communications
Abbr.
Nat Commun
ISSN
2041-1723
Published
2015-09-08
Epub
2015-00-08
Pages
8202
Language
English
Region
England
NLM ID
101528555
PMCID
PMC4569848
Subset
IM
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