Abstract
Purified UvrA, UvrB, UvrC, UvrD, PolA and Lig proteins from Escherichia coli have been used to assess the effect of nucleotide excision repair on the conformation of native negatively supercoiled plasmid DNA in an in vitro test system. The analysis of labeled reaction products on specific gel systems suggests that the Uvr excinuclease has the ability to restrain the superhelical stress in the template DNA during the repair process. This feature, observed in the case of the Uvr system is not found if the repair reaction is initiated by T4 endonuclease V or Micrococcus luteus UV endonuclease.
MeSH Terms
Adenosine Triphosphatases/metabolism
Bacterial Proteins/metabolism
DNA Damage
DNA Helicases
DNA Ligases/metabolism
DNA Polymerase I/metabolism
DNA Repair
DNA, Superhelical/metabolism
Endodeoxyribonucleases/metabolism
Escherichia coli/analysis
Escherichia coli Proteins
Nucleic Acid Conformation
Plasmids
Ultraviolet Rays
Chemicals
Bacterial Proteins
DNA, Superhelical
Escherichia coli Proteins
UvrB protein, E coli
DNA Polymerase I
Endodeoxyribonucleases
endodeoxyribonuclease uvrABC
Adenosine Triphosphatases
UvrD protein, E coli
DNA Helicases
DNA Ligases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Backendorf C
Department of Molecular Genetics, Gorlaeus Laboratories, Leiden University, The Netherlands.
Olsthoorn R
van de Putte P
References (28)
28 references, click to expand
-
Structure and properties of the bacterial nucleoid.
Cell. 1982 Oct;30(3):667-9
PMID: 6291779
-
Determination of pyrimidine dimer unwinding angle by measurement of DNA electrophoretic mobility.
J Mol Biol. 1982 Feb 25;155(2):177-83
PMID: 6281445
-
A novel repair enzyme: UVRABC excision nuclease of Escherichia coli cuts a DNA strand on both sides of the damaged region.
Cell. 1983 May;33(1):249-60
PMID: 6380755
-
Escherichia coli DNA photolyase stimulates uvrABC excision nuclease in vitro.
Proc Natl Acad Sci U S A. 1984 Dec;81(23):7397-401
PMID: 6390436
-
The pIC plasmid and phage vectors with versatile cloning sites for recombinant selection by insertional inactivation.
Gene. 1984 Dec;32(3):481-5
PMID: 6099327
-
Involvement of helicase II (uvrD gene product) and DNA polymerase I in excision mediated by the uvrABC protein complex.
Proc Natl Acad Sci U S A. 1985 Aug;82(15):4925-9
PMID: 3161077
-
Effect of DNA polymerase I and DNA helicase II on the turnover rate of UvrABC excision nuclease.
Proc Natl Acad Sci U S A. 1985 Oct;82(20):6774-8
PMID: 2931721
-
Biochemical topology: applications to DNA recombination and replication.
Science. 1986 May 23;232(4753):951-60
PMID: 3010458
-
Microinjection of Escherichia coli UvrA, B, C and D proteins into fibroblasts of xeroderma pigmentosum complementation groups A and C does not result in restoration of UV-induced unscheduled DNA synthesis.
Mutat Res. 1986 Jul;166(1):89-98
PMID: 3014326
-
Reduced superhelicity of plasmid DNA produced by the rho-15 mutation in Escherichia coli.
Mol Gen Genet. 1986 Sep;204(3):424-9
PMID: 3020379
-
The effect of Escherichia coli Uvr protein binding on the topology of supercoiled DNA.
Nucleic Acids Res. 1986 Nov 11;14(21):8557-71
PMID: 3024109
-
DNase I footprint of ABC excinuclease.
J Biol Chem. 1987 Sep 25;262(27):13180-7
PMID: 3308871
-
Gin-mediated DNA inversion: product structure and the mechanism of strand exchange.
Proc Natl Acad Sci U S A. 1988 Feb;85(3):752-6
PMID: 2829201
-
Transcription generates positively and negatively supercoiled domains in the template.
Cell. 1988 May 6;53(3):433-40
PMID: 2835168
-
Molecular analysis of plasmid DNA repair within ultraviolet-irradiated Escherichia coli. I. T4 endonuclease V-initiated excision repair.
J Biol Chem. 1988 Sep 5;263(25):12728-37
PMID: 3045127
-
Molecular analysis of plasmid DNA repair within ultraviolet-irradiated Escherichia coli. II. UvrABC-initiated excision repair and photolyase-catalyzed dimer monomerization.
J Biol Chem. 1988 Sep 5;263(25):12738-43
PMID: 3045128
-
Isolation and characterization of the Tn3 resolvase synaptic intermediate.
EMBO J. 1988 Jun;7(6):1897-905
PMID: 2844528
-
DNA repair enzymes.
Annu Rev Biochem. 1988;57:29-67
PMID: 3052275
-
ABC excinuclease incises both 5' and 3' to the CC-1065-DNA adduct and its incision activity is stimulated by DNA helicase II and DNA polymerase I.
Biochemistry. 1988 Sep 20;27(19):7184-8
PMID: 2974721
-
DNA supercoiling and prokaryotic transcription.
Cell. 1989 Feb 24;56(4):521-3
PMID: 2645054
-
Differential repair of UV damage in Saccharomyces cerevisiae.
Nucleic Acids Res. 1989 Jun 26;17(12):4433-9
PMID: 2664708
-
The (A)BC excinuclease of Escherichia coli has only the UvrB and UvrC subunits in the incision complex.
Proc Natl Acad Sci U S A. 1989 Jul;86(14):5237-41
PMID: 2546148
-
Gin-mediated recombination of catenated and knotted DNA substrates: implications for the mechanism of interaction between cis-acting sites.
Cell. 1989 Jul 14;58(1):147-59
PMID: 2546671
-
Conformational fluctuations of DNA helix.
Proc Natl Acad Sci U S A. 1975 Nov;72(11):4275-9
PMID: 172901
-
Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.
J Mol Biol. 1977 Jun 15;113(1):237-51
PMID: 881736
-
Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells.
Cell. 1980 Oct;21(3):773-83
PMID: 6254668
-
Sequence dependence of the helical repeat of DNA in solution.
Nature. 1981 Jul 23;292(5821):375-8
PMID: 6265793
-
DNA supercoiling and its effects on DNA structure and function.
Cold Spring Harb Symp Quant Biol. 1983;47 Pt 1:85-91
PMID: 6345067