Home LiteratureArticle Details
PMID: 2541429 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Regulation of the function of eukaryotic DNA topoisomerase I: topological conditions for inactivity.

Camilloni G, Di Martino E, Di Mauro E, Caserta M

Abstract

The effects of supercoiling on the cleavage reaction by eukaryotic DNA topoisomerases I (wheat germ, chicken erythrocyte, and calf thymus) have been analyzed on DNA fragments (0.96 and 2.3 kilobases) encompassing an immunoglobulin kappa light-chain promoter. In one topological condition of the substrate, the absolutely relaxed state, cleavage was found to be impeded. This finding defines the topology-dependent step of the eukaryotic DNA topoisomerase I reaction and shows that for the cleavage reaction topology is more critical than sequence effects. These findings suggest a simple model for the regulation of the DNA topoisomerase I reaction based on topological factors, which may explain the regulatory function of the enzyme in in vivo eukaryotic transcription.

MeSH Terms
Animals Buffers Cattle Chickens DNA/metabolism DNA Topoisomerases, Type I/metabolism DNA, Superhelical/metabolism Immunoglobulin kappa-Chains/genetics Kinetics Nucleic Acid Conformation Plants/enzymology Promoter Regions, Genetic Structure-Activity Relationship Substrate Specificity Temperature Triticum
Chemicals
Buffers DNA, Superhelical Immunoglobulin kappa-Chains DNA DNA Topoisomerases, Type I
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Camilloni G
Centro Acidi Nucleici, Consiglio Nazionale della Ricerche, Rome, Italy.
Di Martino E
Di Mauro E
Caserta M
References (25)
25 references, click to expand
  1. Early and late helix-coil transitions in closed circular DNA. The number of superhelical turns in polyoma DNA.
    J Mol Biol. 1968 Apr 14;33(1):173-97 PMID: 4296518
  2. An activity from mammalian cells that untwists superhelical DNA--a possible swivel for DNA replication (polyoma-ethidium bromide-mouse-embryo cells-dye binding assay).
    Proc Natl Acad Sci U S A. 1972 Jan;69(1):143-6 PMID: 4333036
  3. An omega protein from Drosophila melanogaster.
    Biochemistry. 1974 Oct 8;13(21):4299-303 PMID: 4212937
  4. Conformational fluctuations of DNA helix.
    Proc Natl Acad Sci U S A. 1975 Nov;72(11):4275-9 PMID: 172901
  5. Action of nicking-closing enzyme on supercoiled and nonsupercoiled closed circular DNA: formation of a Boltzmann distribution of topological isomers.
    Proc Natl Acad Sci U S A. 1975 Nov;72(11):4280-4 PMID: 1060106
  6. Strand breakage by the DNA untwisting enzyme results in covalent attachment of the enzyme to DNA.
    Proc Natl Acad Sci U S A. 1977 Sep;74(9):3800-4 PMID: 198805
  7. Catastrophic variation of twist and writhing of circular DNAs with constraint?
    Biopolymers. 1979 Jul;18(7):1709-25 PMID: 540127
  8. A mutant immunoglobulin light chain is formed by aberrant DNA- and RNA-splicing events.
    Nature. 1980 Aug 21;286(5775):779-83 PMID: 6772973
  9. Mapping the topography of DNA wrapped around gyrase by nucleolytic and chemical probing of complexes of unique DNA sequences.
    Cell. 1981 Mar;23(3):721-9 PMID: 6261954
  10. Recognition sites of eukaryotic DNA topoisomerase I: DNA nucleotide sequencing analysis of topo I cleavage sites on SV40 DNA.
    Nucleic Acids Res. 1982 Apr 24;10(8):2565-76 PMID: 6281736
  11. Functional significance and evolutionary development of the 5'-terminal regions of immunoglobulin variable-region genes.
    Cell. 1982 Jun;29(2):681-9 PMID: 6288267
  12. Energetics of DNA twisting. II. Topoisomer analysis.
    J Mol Biol. 1983 Nov 15;170(4):983-1007 PMID: 6644817
  13. Conformation of promoter DNA: fine mapping of S1-hypersensitive sites.
    Cell. 1983 Dec;35(3 Pt 2):837-48 PMID: 6197185
  14. Quantitation of eukaryotic topoisomerase I reactivity with DNA. Preferential cleavage of supercoiled DNA.
    Biochim Biophys Acta. 1985 Mar 20;824(3):263-7 PMID: 2982406
  15. A high affinity topoisomerase I binding sequence is clustered at DNAase I hypersensitive sites in Tetrahymena R-chromatin.
    Cell. 1985 Jun;41(2):541-51 PMID: 2985282
  16. DNA topoisomerases.
    Annu Rev Biochem. 1985;54:665-97 PMID: 2992360
  17. Structure of RNA polymerase II promoters. Conformational alterations and template properties of circularized Saccharomyces cerevisiae GAL1-GAL10 divergent promoters.
    EMBO J. 1986 Apr;5(4):763-71 PMID: 3011425
  18. Expression of transfected DNA depends on DNA topology.
    Cell. 1986 Jul 4;46(1):115-22 PMID: 3459589
  19. Mapping of endogenous nuclease-sensitive regions and of putative topoisomerase sites of action along the chromatin of Dictyostelium ribosomal RNA genes.
    J Mol Biol. 1986 Apr 5;188(3):287-300 PMID: 3016283
  20. Need for DNA topoisomerase activity as a swivel for DNA replication for transcription of ribosomal RNA.
    Nature. 1987 Mar 26-Apr 1;326(6111):414-6 PMID: 2436053
  21. Sequence specificity of DNA topoisomerase I in the presence and absence of camptothecin.
    EMBO J. 1987 Jun;6(6):1817-23 PMID: 3038537
  22. Supercoiling of the DNA template during transcription.
    Proc Natl Acad Sci U S A. 1987 Oct;84(20):7024-7 PMID: 2823250
  23. Involvement of DNA topoisomerase I in transcription of human ribosomal RNA genes.
    Proc Natl Acad Sci U S A. 1988 Feb;85(4):1060-4 PMID: 2829214
  24. Eukaryotic DNA topoisomerase I reaction is topology dependent.
    Nucleic Acids Res. 1988 Jul 25;16(14B):7071-85 PMID: 2841648
  25. DNA conformational variations in the in vitro torsionally strained Ig kappa light chain gene localize on consensus sequences.
    Biochim Biophys Acta. 1988 Nov 10;951(1):139-48 PMID: 2847795
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1989-05-00
Pages
3080-4
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC287068
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com