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PMID: 2476655 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The intron of a plastid gene from a green alga contains an open reading frame for a reverse transcriptase-like enzyme.

Molecular & general genetics : MGG ·Vol. 218 ·No. 2 ·1989-08-00 ·Pages 257-65

Kück U

Abstract

Plastid (pt) and mitochondrial (mt) DNA were isolated from the unicellular green alga KS3/2, which is presumed to be a species of the genera Ankistrodesmus or Monoraphidium. The DNA species are characterized by their different densities (pt, 1.685 g/ml; mt, 1.695 g/ml), individual restriction patterns, and their respective sizes of 130 and 47 kb. Using an intronic sequence from fungal mitochondria as a hybridization probe, intron sequences from mtDNA and from ptDNA were identified. DNA sequencing of the cloned ptDNA intron revealed that the plastid gene for subunit IV of the cytochrome b6/f petD complex is interrupted by a group II intron of unusual length (3533 bp). This was confirmed by transcript analysis. The intron encodes an open reading frame (ORF) which shows significant homology with reverse transcriptase genes from various genetic elements. This discovery is unique for plastomes and indicates that introns, retrotransposons, insertion elements and retroviruses may have a common evolutionary origin.

MeSH Terms
Amino Acid Sequence Base Sequence Blotting, Northern Chlorophyta/genetics DNA/genetics,isolation & purification DNA, Fungal/genetics DNA, Mitochondrial/genetics Electrophoresis Genes Introns Molecular Sequence Data Nucleic Acid Hybridization Organelles RNA/genetics,isolation & purification RNA-Directed DNA Polymerase/genetics Sequence Homology, Nucleic Acid Transcription, Genetic
Chemicals
DNA, Fungal DNA, Mitochondrial RNA DNA RNA-Directed DNA Polymerase
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Kück U
Lehrstuhl für Allgemeine Botanik, Bochum, Federal Republic of Germany.
References (50)
50 references, click to expand
  1. A rapid single-stranded cloning strategy for producing a sequential series of overlapping clones for use in DNA sequencing: application to sequencing the corn mitochondrial 18 S rDNA.
    Plasmid. 1985 Jan;13(1):31-40 PMID: 3991809
  2. The maize plastid psbB-psbF-petB-petD gene cluster: spliced and unspliced petB and petD RNAs encode alternative products.
    Curr Genet. 1987;12(1):69-77 PMID: 2835175
  3. A novel reverse transcriptase activity associated with mitochondrial plasmids of Neurospora.
    Cell. 1988 Nov 18;55(4):693-704 PMID: 2460246
  4. Molecular cloning of the rDNA of Saccharomyces rosei and comparison of its transcription initiation region with that of Saccharomyces carlsbergensis.
    Gene. 1983 Jul;23(1):53-63 PMID: 6618177
  5. The DNA sequence and genetic organization of a Neurospora mitochondrial plasmid suggest a relationship to introns and mobile elements.
    Cell. 1984 Sep;38(2):441-53 PMID: 6088081
  6. L1 family of repetitive DNA sequences in primates may be derived from a sequence encoding a reverse transcriptase-related protein.
    Nature. 1986 Jun 5-11;321(6070):625-8 PMID: 2423883
  7. Compilation of tRNA sequences and sequences of tRNA genes.
    Nucleic Acids Res. 1987;15 Suppl:r53-188 PMID: 3554146
  8. Conservation of RNA secondary structures in two intron families including mitochondrial-, chloroplast- and nuclear-encoded members.
    EMBO J. 1983;2(1):33-8 PMID: 11894905
  9. Nucleotide sequence of the clustered genes for apocytochrome b6 and subunit 4 of the cytochrome b/f complex in the spinach plastid chromosome.
    Curr Genet. 1984 Sep;8(7):543-9 PMID: 24177956
  10. Polymer support oligonucleotide synthesis XVIII: use of beta-cyanoethyl-N,N-dialkylamino-/N-morpholino phosphoramidite of deoxynucleosides for the synthesis of DNA fragments simplifying deprotection and isolation of the final product.
    Nucleic Acids Res. 1984 Jun 11;12(11):4539-57 PMID: 6547529
  11. Structural and transcription analysis of two homologous genes for the P700 chlorophyll a-apoproteins in Chlamydomonas reinhardii: evidence for in vivo trans-splicing.
    EMBO J. 1987 Aug;6(8):2185-95 PMID: 16453785
  12. Sequence homology between retroviral reverse transcriptase and putative polymerases of hepatitis B virus and cauliflower mosaic virus.
    Nature. 1983 Oct 27-Nov 2;305(5937):827-9 PMID: 6195530
  13. An intron-encoded protein is active in a gene conversion process that spreads an intron into a mitochondrial gene.
    Cell. 1985 Jun;41(2):383-94 PMID: 3886163
  14. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe. The cytochrome b gene has an intron closely related to the first two introns in the Saccharomyces cerevisiae cox1 gene.
    J Mol Biol. 1985 Aug 5;184(3):353-66 PMID: 4046021
  15. Nucleotide sequence of Rous sarcoma virus.
    Cell. 1983 Mar;32(3):853-69 PMID: 6299578
  16. The chloroplast tRNALys(UUU) gene from mustard (Sinapis alba) contains a class II intron potentially coding for a maturase-related polypeptide.
    Curr Genet. 1987;11(4):251-7 PMID: 2834093
  17. Ingi, a 5.2-kb dispersed sequence element from Trypanosoma brucei that carries half of a smaller mobile element at either end and has homology with mammalian LINEs.
    Mol Cell Biol. 1987 Apr;7(4):1465-75 PMID: 3037321
  18. The onset of senescence is affected by DNA rearrangements of a discontinuous mitochondrial gene in Podospora anserina.
    Curr Genet. 1985;9(5):373-82 PMID: 2836091
  19. Spinach plastid genes coding for initiation factor IF-1, ribosomal protein S11 and RNA polymerase alpha-subunit.
    Nucleic Acids Res. 1986 Jan 24;14 (2):1029-44 PMID: 3003688
  20. Rapid and sensitive protein similarity searches.
    Science. 1985 Mar 22;227(4693):1435-41 PMID: 2983426
  21. Characterization and cloning of plasmid like DNA of the ascomycete Podospora anserina.
    Mol Gen Genet. 1980;178(3):639-46 PMID: 6993860
  22. The pUC plasmids, an M13mp7-derived system for insertion mutagenesis and sequencing with synthetic universal primers.
    Gene. 1982 Oct;19(3):259-68 PMID: 6295879
  23. The sequence of a large L1Md element reveals a tandemly repeated 5' end and several features found in retrotransposons.
    Mol Cell Biol. 1986 Jan;6(1):168-82 PMID: 3023821
  24. Nucleotide sequence of Moloney murine leukaemia virus.
    Nature. 1981 Oct 15-21;293(5833):543-8 PMID: 6169994
  25. Cin4, an insert altering the structure of the A1 gene in Zea mays, exhibits properties of nonviral retrotransposons.
    EMBO J. 1987 Dec 20;6(13):3873-80 PMID: 16453815
  26. Plastid, nuclear and reverse transcriptase sequences in the mitochondrial genome of Oenothera: is genetic information transferred between organelles via RNA?
    EMBO J. 1987 Oct;6(10):2857-63 PMID: 14650433
  27. Amino acid sequence homology in gag region of reverse transcribing elements and the coat protein gene of cauliflower mosaic virus.
    Nucleic Acids Res. 1986 Jan 24;14(2):623-33 PMID: 2418414
  28. Assembly of the mitochondrial membrane system. Structure and nucleotide sequence of the gene coding for subunit 1 of yeast cytochrme oxidase.
    J Biol Chem. 1980 Dec 25;255(24):11927-41 PMID: 6254986
  29. The complete nucleotide sequence of the tobacco chloroplast genome: its gene organization and expression.
    EMBO J. 1986 Sep;5(9):2043-2049 PMID: 16453699
  30. Sequence of introns and flanking exons in wild-type and box3 mutants of cytochrome b reveals an interlaced splicing protein coded by an intron.
    Cell. 1980 Nov;22(2 Pt 2):333-48 PMID: 7004642
  31. Independent evolution of structural and coding regions in a Neurospora mitochondrial intron.
    Nature. 1988 Apr 14;332(6165):654-6 PMID: 2965793
  32. Evidence for plasmid like DNA in a filamentous fungus, the ascomycete Podospora anserina.
    Mol Gen Genet. 1978 Jul 4;162(3):341-3 PMID: 683172
  33. The chloroplast ribosomal intron of Chlamydomonas reinhardii codes for a polypeptide related to mitochondrial maturases.
    Nucleic Acids Res. 1985 Feb 11;13(3):975-84 PMID: 4000933
  34. Human adult T-cell leukemia virus: complete nucleotide sequence of the provirus genome integrated in leukemia cell DNA.
    Proc Natl Acad Sci U S A. 1983 Jun;80(12):3618-22 PMID: 6304725
  35. Complex RNA maturation in chloroplasts. The psbB operon from spinach.
    Eur J Biochem. 1988 Feb 1;171(3):551-64 PMID: 2831053
  36. Universal code equivalent of a yeast mitochondrial intron reading frame is expressed into E. coli as a specific double strand endonuclease.
    Cell. 1986 Feb 28;44(4):521-33 PMID: 3004738
  37. Gel electrophoresis of restriction fragments.
    Methods Enzymol. 1979;68:152-76 PMID: 232210
  38. Mitochondrial class II introns encode proteins related to the reverse transcriptases of retroviruses.
    Nature. 1985 Aug 15-21;316(6029):641-3 PMID: 2412125
  39. Complete nucleotide sequence of the Drosophila transposable element copia: homology between copia and retroviral proteins.
    Mol Cell Biol. 1985 Jul;5(7):1630-8 PMID: 2410772
  40. Rapid splicing and stepwise processing of a transcript from the psbB operon in tobacco chloroplasts: determination of the intron sites in petB and petD.
    Mol Gen Genet. 1987 Oct;209(3):427-31 PMID: 17193705
  41. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  42. Mitochondrial DNA from Podospora anserina. II. Properties of mutant DNA and multimeric circular DNA from senescent cultures.
    Mol Gen Genet. 1979 Mar 27;171(3):239-50 PMID: 286868
  43. Buffer gradient gels and 35S label as an aid to rapid DNA sequence determination.
    Proc Natl Acad Sci U S A. 1983 Jul;80(13):3963-5 PMID: 6575390
  44. Transposition of an intron in yeast mitochondria requires a protein encoded by that intron.
    Cell. 1985 Jun;41(2):395-402 PMID: 3886164
  45. Construction of improved M13 vectors using oligodeoxynucleotide-directed mutagenesis.
    Gene. 1983 Dec;26(1):101-6 PMID: 6323249
  46. Mitochondrial plasmids of Neurospora: integration into mitochondrial DNA and evidence for reverse transcription in mitochondria.
    Cell. 1986 Nov 21;47(4):505-16 PMID: 3022934
  47. Putative nucleic acid binding 'fingers' at the carboxyl terminus of polypeptides encoded from introns of organellar genes.
    Nucleic Acids Res. 1988 May 25;16(10):4729 PMID: 3380700
  48. The mitochondrial plasmid of Podospora anserina: A mobile intron of a mitochondrial gene.
    Curr Genet. 1984 May;8(4):299-305 PMID: 24177799
  49. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  50. Identification of the coding sequence for a reverse transcriptase-like enzyme in a transposable genetic element in Drosophila melanogaster.
    Nature. 1984 Dec 13-19;312(5995):659-61 PMID: 6209583
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
Published
1989-08-00
Pages
257-65
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
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