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PMID: 2411541 Published · ppublish English Journal Article

Transcription signals in embryonic Xenopus laevis U1 RNA genes.

The EMBO journal ·Vol. 4 ·No. 6 ·1985-06-00 ·Pages 1537-43

Ciliberto G, Buckland R, Cortese R, Philipson L

Abstract

A genomic clone of the most abundant U1 RNA genes from Xenopus laevis was isolated from erythrocyte DNA and sequenced. Two different U1 RNA genes, U1A and U1B, are encoded in an HindIII 1.5-kb fragment and both are expressed after microinjection in Xenopus oocytes. Deletions and site-directed mutagenesis of the clones revealed two promoter elements in the U1B gene; one, located 250-220 nucleotides upstream from the 5' terminus of mature U1 RNA, functions as an activator, yielding a 10-fold promotion of transcription; the other, located 60-50 nucleotides upstream of the cap site, functions as an essential element for promotion of transcription. The U1A gene contained only the latter element in the cloned fragment. Homologous sequences can be identified in several U RNA genes of X. laevis.

MeSH Terms
Animals Base Sequence Chromosome Mapping Cloning, Molecular RNA/analysis RNA, Small Nuclear Repetitive Sequences, Nucleic Acid Transcription, Genetic Xenopus laevis/genetics
Chemicals
RNA, Small Nuclear RNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Ciliberto G
Buckland R
Cortese R
Philipson L
References (24)
24 references, click to expand
  1. Detection of specific sequences among DNA fragments separated by gel electrophoresis.
    J Mol Biol. 1975 Nov 5;98(3):503-17 PMID: 1195397
  2. Lambdoid phages that simplify the recovery of in vitro recombinants.
    Mol Gen Genet. 1977 Jan 7;150(1):53-61 PMID: 319344
  3. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  4. Cloning of nematode tRNA genes and their expression in the frog oocyte.
    Nucleic Acids Res. 1978 Dec;5(12):4593-611 PMID: 370775
  5. Purification of specific adenovirus 2 RNAs by preparative hybridization and selective thermal elution.
    Nucleic Acids Res. 1979 Feb;6(2):593-607 PMID: 424306
  6. Antibodies to small nuclear RNAs complexed with proteins are produced by patients with systemic lupus erythematosus.
    Proc Natl Acad Sci U S A. 1979 Nov;76(11):5495-9 PMID: 316537
  7. Promoter sequences of eukaryotic protein-coding genes.
    Science. 1980 Sep 19;209(4463):1406-14 PMID: 6251548
  8. Abundant pseudogenes for small nuclear RNAs are dispersed in the human genome.
    Proc Natl Acad Sci U S A. 1981 Feb;78(2):810-4 PMID: 6165010
  9. Human U1 loci: genes for human U1 RNA have dramatically similar genomic environments.
    Cell. 1982 May;29(1):257-64 PMID: 6179629
  10. Transcription of a gene for human U1 small nuclear RNA.
    Cell. 1982 May;29(1):265-74 PMID: 6179630
  11. SnRNAs, SnRNPs, and RNA processing.
    Annu Rev Biochem. 1982;51:617-54 PMID: 6180681
  12. The U1 small nuclear RNA-protein complex selectively binds a 5' splice site in vitro.
    Cell. 1983 Jun;33(2):509-18 PMID: 6190573
  13. Loci for human U1 RNA: structural and evolutionary implications.
    J Mol Biol. 1983 Jun 25;167(2):245-57 PMID: 6191037
  14. New M13 vectors for cloning.
    Methods Enzymol. 1983;101:20-78 PMID: 6310323
  15. Oligonucleotide-directed mutagenesis of DNA fragments cloned into M13 vectors.
    Methods Enzymol. 1983;100:468-500 PMID: 6225933
  16. Purification of snRNPs U1, U2, U4, U5 and U6 with 2,2,7-trimethylguanosine-specific antibody and definition of their constituent proteins reacting with anti-Sm and anti-(U1)RNP antisera.
    EMBO J. 1983;2(7):1129-35 PMID: 6194992
  17. Xenopus laevis U2 snRNA genes: tandemly repeated transcription units sharing 5' and 3' flanking homology with other RNA polymerase II transcribed genes.
    EMBO J. 1983;2(11):1883-91 PMID: 6196192
  18. True genes for human U1 small nuclear RNA. Copy number, polymorphism, and methylation.
    J Biol Chem. 1984 Feb 10;259(3):2013-21 PMID: 6198328
  19. Xenopus laevis U1 snRNA genes: characterisation of transcriptionally active genes reveals major and minor repeated gene families.
    EMBO J. 1984 May;3(5):1075-81 PMID: 6203742
  20. Synthesis of human U1 RNA. II. Identification of two regions of the promoter essential for transcription initiation at position +1.
    J Biol Chem. 1984 Jul 10;259(13):8345-52 PMID: 6203910
  21. Differential expression of multiple U1 small nuclear RNAs in oocytes and embryos of Xenopus laevis.
    Cell. 1984 Oct;38(3):681-9 PMID: 6207932
  22. Characterization of three chicken pseudogenes for U1 RNA.
    DNA. 1984 Aug;3(4):281-6 PMID: 6207998
  23. The RNA lariat: a new ring to the splicing of mRNA precursors.
    Cell. 1984 Dec;39(3 Pt 2):423-5 PMID: 6568879
  24. The two embryonic U1 small nuclear RNAs of Xenopus laevis are encoded by a major family of tandemly repeated genes.
    Mol Cell Biol. 1984 Dec;4(12):2580-6 PMID: 6084809
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
1985-06-00
Pages
1537-43
Language
English
Region
England
NLM ID
8208664
PMCID
PMC554379
Subset
IM
Databases
GENBANK
X02585
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