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PMID: 22988072 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Complexity of chromatin folding is captured by the strings and binders switch model.

Barbieri M, Chotalia M, Fraser J, Lavitas LM, Dostie J, Pombo A, Nicodemi M

Abstract

Chromatin has a complex spatial organization in the cell nucleus that serves vital functional purposes. A variety of chromatin folding conformations has been detected by single-cell imaging and chromosome conformation capture-based approaches. However, a unified quantitative framework describing spatial chromatin organization is still lacking. Here, we explore the "strings and binders switch" model to explain the origin and variety of chromatin behaviors that coexist and dynamically change within living cells. This simple polymer model recapitulates the scaling properties of chromatin folding reported experimentally in different cellular systems, the fractal state of chromatin, the processes of domain formation, and looping out. Additionally, the strings and binders switch model reproduces the recently proposed "fractal-globule" model, but only as one of many possible transient conformations.

MeSH Terms
Chromatin/chemistry Chromatin Assembly and Disassembly/physiology Computer Simulation Gene Expression Regulation/genetics Genome/genetics In Situ Hybridization, Fluorescence Models, Chemical Monte Carlo Method
Chemicals
Chromatin
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Barbieri Mariano
Dipartimento di Scienze Fisiche, Università di Napoli Federico II, 80126 Naples, Italy.
Chotalia Mita
Fraser James
Lavitas Liron-Mark
Dostie Josée
Pombo Ana
Nicodemi Mario
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Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2012-10-02
Epub
2012-00-17
Pages
16173-8
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC3479593
Subset
IM
Grants
Medical Research Council · MC_U120061476 · United Kingdom
CIHR · MOP-86716 · Canada
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