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PMID: 22930834 Published · ppublish English Historical Article Journal Article Research Support, N.I.H., Extramural

NIH Image to ImageJ: 25 years of image analysis.

Nature methods ·Vol. 9 ·No. 7 ·2012-07-00 ·Pages 671-5

Schneider CA, Rasband WS, Eliceiri KW

Abstract

For the past 25 years NIH Image and ImageJ software have been pioneers as open tools for the analysis of scientific images. We discuss the origins, challenges and solutions of these two programs, and how their history can serve to advise and inform other software projects.

MeSH Terms
Computational Biology/history,methods,trends History, 20th Century History, 21st Century Image Processing, Computer-Assisted/methods National Institutes of Health (U.S.) Software/history,trends United States
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Schneider Caroline A
Laboratory for Optical and Computational Instrumentation, University of Wisconsin at Madison, Madison, Wisconsin, USA.
Rasband Wayne S
Eliceiri Kevin W
References (12)
12 references, click to expand
  1. Knime4Bio: a set of custom nodes for the interpretation of next-generation sequencing data with KNIME.
    Bioinformatics. 2011 Nov 15;27(22):3200-1 PMID: 21984761
  2. CellProfiler: free, versatile software for automated biological image analysis.
    Biotechniques. 2007 Jan;42(1):71-5 PMID: 17269487
  3. Extending KNIME for next-generation sequencing data analysis.
    Bioinformatics. 2011 Oct 15;27(20):2907-9 PMID: 21873641
  4. Fiji: an open-source platform for biological-image analysis.
    Nat Methods. 2012 Jun 28;9(7):676-82 PMID: 22743772
  5. Computer control of microscopes using µManager.
    Curr Protoc Mol Biol. 2010 Oct;Chapter 14:Unit14.20 PMID: 20890901
  6. Metadata matters: access to image data in the real world.
    J Cell Biol. 2010 May 31;189(5):777-82 PMID: 20513764
  7. ImageJ for microscopy.
    Biotechniques. 2007 Jul;43(1 Suppl):25-30 PMID: 17936939
  8. Icy: an open bioimage informatics platform for extended reproducible research.
    Nat Methods. 2012 Jun 28;9(7):690-6 PMID: 22743774
  9. KNIME Workflow to Assess PAINS Filters in SMARTS Format. Comparison of RDKit and Indigo Cheminformatics Libraries.
    Mol Inform. 2011 Oct;30(10):847-50 PMID: 27468104
  10. CellProfiler: image analysis software for identifying and quantifying cell phenotypes.
    Genome Biol. 2006;7(10):R100 PMID: 17076895
  11. Affordable image analysis using NIH Image/ImageJ.
    Indian J Cancer. 2004 Jan-Mar;41(1):47 PMID: 15105580
  12. Improved structure, function and compatibility for CellProfiler: modular high-throughput image analysis software.
    Bioinformatics. 2011 Apr 15;27(8):1179-80 PMID: 21349861
Article Info
Journal
Nature methods
Abbr.
Nat Methods
ISSN
1548-7105
Published
2012-07-00
Pages
671-5
Language
English
Region
United States
NLM ID
101215604
PMCID
PMC5554542
Subset
IM
Grants
NIGMS NIH HHS · RC2 GM092519 · United States
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