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PMID: 22904013 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

A TOG:αβ-tubulin complex structure reveals conformation-based mechanisms for a microtubule polymerase.

Science (New York, N.Y.) ·Vol. 337 ·No. 6096 ·2012-08-17 ·Pages 857-60

Ayaz P, Ye X, Huddleston P, Brautigam CA, Rice LM

Abstract

Stu2p/XMAP215/Dis1 family proteins are evolutionarily conserved regulatory factors that use αβ-tubulin-interacting tumor overexpressed gene (TOG) domains to catalyze fast microtubule growth. Catalysis requires that these polymerases discriminate between unpolymerized and polymerized forms of αβ-tubulin, but the mechanism by which they do so has remained unclear. Here, we report the structure of the TOG1 domain from Stu2p bound to yeast αβ-tubulin. TOG1 binds αβ-tubulin in a way that excludes equivalent binding of a second TOG domain. Furthermore, TOG1 preferentially binds a curved conformation of αβ-tubulin that cannot be incorporated into microtubules, contacting α- and β-tubulin surfaces that do not participate in microtubule assembly. Conformation-selective interactions with αβ-tubulin explain how TOG-containing polymerases discriminate between unpolymerized and polymerized forms of αβ-tubulin and how they selectively recognize the growing end of the microtubule.

MeSH Terms
Crystallography, X-Ray Gene Expression Regulation, Neoplastic Genes, Neoplasm Microtubule-Associated Proteins/chemistry,genetics Microtubules/enzymology Polymerization Protein Conformation Protein Structure, Tertiary Saccharomyces cerevisiae Proteins/chemistry,genetics Tubulin/chemistry
Chemicals
Microtubule-Associated Proteins STU2 protein, S cerevisiae Saccharomyces cerevisiae Proteins Tubulin
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Ayaz Pelin
Department of Biophysics, University of Texas Southwestern Medical Center, 5323 Harry Hines Blvd, Dallas, TX 75390, USA.
Ye Xuecheng
Huddleston Patrick
Brautigam Chad A
Rice Luke M
References (24)
24 references, click to expand
  1. Sedimentation velocity analysis of heterogeneous protein-protein interactions: sedimentation coefficient distributions c(s) and asymptotic boundary profiles from Gilbert-Jenkins theory.
    Biophys J. 2005 Jul;89(1):651-66 PMID: 15863474
  2. Size-distribution analysis of macromolecules by sedimentation velocity ultracentrifugation and lamm equation modeling.
    Biophys J. 2000 Mar;78(3):1606-19 PMID: 10692345
  3. Size-distribution analysis of proteins by analytical ultracentrifugation: strategies and application to model systems.
    Biophys J. 2002 Feb;82(2):1096-111 PMID: 11806949
  4. XMAP215 is a processive microtubule polymerase.
    Cell. 2008 Jan 11;132(1):79-88 PMID: 18191222
  5. Structural basis of microtubule plus end tracking by XMAP215, CLIP-170, and EB1.
    Mol Cell. 2007 Sep 21;27(6):976-91 PMID: 17889670
  6. Insights into microtubule nucleation from the crystal structure of human gamma-tubulin.
    Nature. 2005 May 26;435(7041):523-7 PMID: 15917813
  7. A microtubule-associated protein from Xenopus eggs that specifically promotes assembly at the plus-end.
    J Cell Biol. 1987 Nov;105(5):2203-15 PMID: 2890645
  8. Features and development of Coot.
    Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):486-501 PMID: 20383002
  9. Design, overexpression, and purification of polymerization-blocked yeast αβ-tubulin mutants.
    Biochemistry. 2011 Oct 11;50(40):8636-44 PMID: 21888381
  10. Microtubule polymerization dynamics.
    Annu Rev Cell Dev Biol. 1997;13:83-117 PMID: 9442869
  11. Mal3, the Schizosaccharomyces pombe homolog of EB1, changes the microtubule lattice.
    Nat Struct Mol Biol. 2008 Oct;15(10):1102-8 PMID: 18794845
  12. Control of microtubule dynamics by Stu2p is essential for spindle orientation and metaphase chromosome alignment in yeast.
    Mol Biol Cell. 2001 Sep;12(9):2870-80 PMID: 11553724
  13. Refined structure of alpha beta-tubulin at 3.5 A resolution.
    J Mol Biol. 2001 Nov 9;313(5):1045-57 PMID: 11700061
  14. Crystal structure of a TOG domain: conserved features of XMAP215/Dis1-family TOG domains and implications for tubulin binding.
    Structure. 2007 Mar;15(3):355-62 PMID: 17355870
  15. Cold-sensitive and caffeine-supersensitive mutants of the Schizosaccharomyces pombe dis genes implicated in sister chromatid separation during mitosis.
    EMBO J. 1988 May;7(5):1465-73 PMID: 3409871
  16. Structural mechanisms underlying nucleotide-dependent self-assembly of tubulin and its relatives.
    Curr Opin Struct Biol. 2006 Apr;16(2):221-9 PMID: 16549346
  17. The nucleotide switch of tubulin and microtubule assembly: a polymerization-driven structural change.
    Biochemistry. 2006 May 16;45(19):5933-8 PMID: 16681364
  18. HKL-3000: the integration of data reduction and structure solution--from diffraction images to an initial model in minutes.
    Acta Crystallogr D Biol Crystallogr. 2006 Aug;62(Pt 8):859-66 PMID: 16855301
  19. PHENIX: a comprehensive Python-based system for macromolecular structure solution.
    Acta Crystallogr D Biol Crystallogr. 2010 Feb;66(Pt 2):213-21 PMID: 20124702
  20. Stu2p binds tubulin and undergoes an open-to-closed conformational change.
    J Cell Biol. 2006 Mar 27;172(7):1009-22 PMID: 16567500
  21. The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly.
    Proc Natl Acad Sci U S A. 2008 Apr 8;105(14):5378-83 PMID: 18388201
  22. Insight into tubulin regulation from a complex with colchicine and a stathmin-like domain.
    Nature. 2004 Mar 11;428(6979):198-202 PMID: 15014504
  23. XMAP215 polymerase activity is built by combining multiple tubulin-binding TOG domains and a basic lattice-binding region.
    Proc Natl Acad Sci U S A. 2011 Feb 15;108(7):2741-6 PMID: 21282620
  24. Stu2p: A microtubule-binding protein that is an essential component of the yeast spindle pole body.
    J Cell Biol. 1997 Dec 1;139(5):1271-80 PMID: 9382872
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2012-08-17
Pages
857-60
Language
English
Region
United States
NLM ID
0404511
PMCID
PMC3734851
Subset
IM
Grants
NIGMS NIH HHS · R01 GM098543 · United States
NIGMS NIH HHS · GM-098543 · United States
Databases
PDB
Analysis Services
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