Home LiteratureArticle Details
PMID: 18388201 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

The lattice as allosteric effector: structural studies of alphabeta- and gamma-tubulin clarify the role of GTP in microtubule assembly.

Rice LM, Montabana EA, Agard DA

Abstract

GTP-dependent microtubule polymerization dynamics are required for cell division and are accompanied by domain rearrangements in the polymerizing subunit, alphabeta-tubulin. Two opposing models describe the role of GTP and its relationship to conformational change in alphabeta-tubulin. The allosteric model posits that unpolymerized alphabeta-tubulin adopts a more polymerization-competent conformation upon GTP binding. The lattice model posits that conformational changes occur only upon recruitment into the growing lattice. Published data support a lattice model, but are largely indirect and so the allosteric model has prevailed. We present two independent solution probes of the conformation of alphabeta-tubulin, the 2.3 A crystal structure of gamma-tubulin bound to GDP, and kinetic simulations to interpret the functional consequences of the structural data. These results (with our previous gamma-tubulin:GTPgammaS structure) support the lattice model by demonstrating that major domain rearrangements do not occur in eukaryotic tubulins in response to GTP binding, and that the unpolymerized conformation of alphabeta-tubulin differs significantly from the polymerized one. Thus, geometric constraints of lateral self-assembly must drive alphabeta-tubulin conformational changes, whereas GTP plays a secondary role to tune the strength of longitudinal contacts within the microtubule lattice. alphabeta-Tubulin behaves like a bent spring, resisting straightening until forced to do so by GTP-mediated interactions with the growing microtubule. Kinetic simulations demonstrate that resistance to straightening opposes microtubule initiation by specifically destabilizing early assembly intermediates that are especially sensitive to the strength of lateral interactions. These data provide new insights into the molecular origins of dynamic microtubule behavior.

MeSH Terms
Allosteric Regulation Computer Simulation Guanosine Triphosphate/physiology Kinetics Microtubules/metabolism Models, Biological Protein Conformation Tubulin/chemistry
Chemicals
Tubulin Guanosine Triphosphate
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Rice Luke M
Department of Biochemistry and Biophysics and Howard Hughes Medical Institute, University of California, San Francisco, CA 94158-2517, USA.
Montabana Elizabeth A
Agard David A
References (37)
37 references, click to expand
  1. Small-angle scattering: a view on the properties, structures and structural changes of biological macromolecules in solution.
    Q Rev Biophys. 2003 May;36(2):147-227 PMID: 14686102
  2. Structure of growing microtubule ends: two-dimensional sheets close into tubes at variable rates.
    J Cell Biol. 1995 Jun;129(5):1311-28 PMID: 7775577
  3. Structural insights into FtsZ protofilament formation.
    Nat Struct Mol Biol. 2004 Dec;11(12):1243-50 PMID: 15558053
  4. Refined structure of alpha beta-tubulin at 3.5 A resolution.
    J Mol Biol. 2001 Nov 9;313(5):1045-57 PMID: 11700061
  5. Roles of colchicine rings B and C in the binding process to tubulin.
    Biochemistry. 1989 Jun 27;28(13):5589-99 PMID: 2775723
  6. Conformational changes of p97 during nucleotide hydrolysis determined by small-angle X-Ray scattering.
    Structure. 2005 Feb;13(2):183-95 PMID: 15698563
  7. A synchrotron X-ray scattering characterization of purified tubulin and of its expansion induced by mild detergent binding.
    Biochemistry. 1989 May 2;28(9):4036-40 PMID: 2752006
  8. Structural changes at microtubule ends accompanying GTP hydrolysis: information from a slowly hydrolyzable analogue of GTP, guanylyl (alpha,beta)methylenediphosphonate.
    Proc Natl Acad Sci U S A. 1998 Mar 31;95(7):3661-6 PMID: 9520422
  9. Insight into tubulin regulation from a complex with colchicine and a stathmin-like domain.
    Nature. 2004 Mar 11;428(6979):198-202 PMID: 15014504
  10. Microtubule polymerization dynamics.
    Annu Rev Cell Dev Biol. 1997;13:83-117 PMID: 9442869
  11. Straight GDP-tubulin protofilaments form in the presence of taxol.
    Curr Biol. 2007 Oct 23;17(20):1765-70 PMID: 17919908
  12. Microtubule dynamics and microtubule caps: a time-resolved cryo-electron microscopy study.
    J Cell Biol. 1991 Sep;114(5):977-91 PMID: 1874792
  13. Assembly of archaeal cell division protein FtsZ and a GTPase-inactive mutant into double-stranded filaments.
    J Biol Chem. 2003 Aug 29;278(35):33562-70 PMID: 12807911
  14. Characterization of two related Drosophila gamma-tubulin complexes that differ in their ability to nucleate microtubules.
    J Cell Biol. 1999 Feb 22;144(4):721-33 PMID: 10037793
  15. Linkages between the dissociation of alpha beta tubulin into subunits and ligand binding: the ground state of tubulin is the GDP conformation.
    Biochemistry. 1994 Feb 1;33(4):885-93 PMID: 8305436
  16. Is the tubulin/FtsZ fold related to the G-protein fold?
    Trends Cell Biol. 1998 Aug;8(8):306-7 PMID: 9704406
  17. In vitro assembly and GTP hydrolysis by bacterial tubulins BtubA and BtubB.
    J Cell Biol. 2005 Apr 25;169(2):233-8 PMID: 15851515
  18. Stathmin slows down guanosine diphosphate dissociation from tubulin in a phosphorylation-controlled fashion.
    Biochemistry. 2000 Oct 10;39(40):12295-302 PMID: 11015208
  19. Oscillations in microtubule polymerization: the rate of GTP regeneration on tubulin controls the period.
    EMBO J. 1988 Sep;7(9):2653-9 PMID: 3181136
  20. Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer.
    Proc Natl Acad Sci U S A. 2005 Jun 28;102(26):9170-5 PMID: 15967998
  21. Structure of the gamma-tubulin ring complex: a template for microtubule nucleation.
    Nat Cell Biol. 2000 Jun;2(6):365-70 PMID: 10854328
  22. Insights into microtubule nucleation from the crystal structure of human gamma-tubulin.
    Nature. 2005 May 26;435(7041):523-7 PMID: 15917813
  23. The colchicine-induced GTPase activity of tubulin: state of the product. Activation by microtubule-promoting cosolvents.
    Biochemistry. 1994 May 24;33(20):6253-61 PMID: 8193140
  24. Effect of colchicine analogues on the dissociation of alpha beta tubulin into subunits: the locus of colchicine binding.
    Biochemistry. 1994 Feb 1;33(4):894-901 PMID: 8305437
  25. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  26. Structural mechanisms underlying nucleotide-dependent self-assembly of tubulin and its relatives.
    Curr Opin Struct Biol. 2006 Apr;16(2):221-9 PMID: 16549346
  27. The nucleotide switch of tubulin and microtubule assembly: a polymerization-driven structural change.
    Biochemistry. 2006 May 16;45(19):5933-8 PMID: 16681364
  28. Structural insights into the conformational variability of FtsZ.
    J Mol Biol. 2007 Nov 9;373(5):1229-42 PMID: 17900614
  29. Likelihood-enhanced fast rotation functions.
    Acta Crystallogr D Biol Crystallogr. 2004 Mar;60(Pt 3):432-8 PMID: 14993666
  30. Structural basis for the regulation of tubulin by vinblastine.
    Nature. 2005 May 26;435(7041):519-22 PMID: 15917812
  31. Tubulin and FtsZ form a distinct family of GTPases.
    Nat Struct Biol. 1998 Jun;5(6):451-8 PMID: 9628483
  32. Spectroscopic and kinetic features of allocolchicine binding to tubulin.
    Biochemistry. 1989 Sep 19;28(19):7753-60 PMID: 2611212
  33. Organization of the SH3-SH2 unit in active and inactive forms of the c-Abl tyrosine kinase.
    Mol Cell. 2006 Mar 17;21(6):787-98 PMID: 16543148
  34. Dynamic instability of individual microtubules analyzed by video light microscopy: rate constants and transition frequencies.
    J Cell Biol. 1988 Oct;107(4):1437-48 PMID: 3170635
  35. Crystal structure of the bacterial cell-division protein FtsZ.
    Nature. 1998 Jan 8;391(6663):203-6 PMID: 9428770
  36. Nucleotide-dependent bending flexibility of tubulin regulates microtubule assembly.
    Nature. 2005 Jun 16;435(7044):911-5 PMID: 15959508
  37. Analysis of protein aggregation kinetics.
    Methods Enzymol. 1999;309:256-74 PMID: 10507029
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
1091-6490
Published
2008-04-08
Epub
2008-00-03
Pages
5378-83
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC2291134
Subset
IM
Grants
NIGMS NIH HHS · R01 GM031627 · United States
NIGMS NIH HHS · GM31627 · United States
Databases
PDB
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com