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PMID: 22797518 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Gut microbiota composition correlates with diet and health in the elderly.

Nature ·Vol. 488 ·No. 7410 ·2012-08-09 ·Pages 178-84

Claesson MJ, Jeffery IB, Conde S, Power SE, O'Connor EM, Cusack S, Harris HM, Coakley M, Lakshminarayanan B, O'Sullivan O, Fitzgerald GF, Deane J, O'Connor M, Harnedy N, O'Connor K, O'Mahony D, van Sinderen D, Wallace M, Brennan L, Stanton C, Marchesi JR, Fitzgerald AP, Shanahan F, Hill C, Ross RP, O'Toole PW

Abstract

Alterations in intestinal microbiota composition are associated with several chronic conditions, including obesity and inflammatory diseases. The microbiota of older people displays greater inter-individual variation than that of younger adults. Here we show that the faecal microbiota composition from 178 elderly subjects formed groups, correlating with residence location in the community, day-hospital, rehabilitation or in long-term residential care. However, clustering of subjects by diet separated them by the same residence location and microbiota groupings. The separation of microbiota composition significantly correlated with measures of frailty, co-morbidity, nutritional status, markers of inflammation and with metabolites in faecal water. The individual microbiota of people in long-stay care was significantly less diverse than that of community dwellers. Loss of community-associated microbiota correlated with increased frailty. Collectively, the data support a relationship between diet, microbiota and health status, and indicate a role for diet-driven microbiota alterations in varying rates of health decline upon ageing.

MeSH Terms
Aged Aged, 80 and over Aging/physiology Cohort Studies Diet/statistics & numerical data Diet Surveys Feces/microbiology Fruit Geriatric Assessment Health Health Status Health Surveys Homes for the Aged Hospitals, Community Humans Intestines/microbiology Meat Metagenome/physiology Rehabilitation Centers Surveys and Questionnaires Vegetables
Authors & Affiliations
26 authors, click to expand affiliations / ORCID
Claesson Marcus J
Department of Microbiology, University College Cork, Ireland.
Jeffery Ian B
Conde Susana
Power Susan E
O'Connor Eibhlís M
Cusack Siobhán
Harris Hugh M B
Coakley Mairead
Lakshminarayanan Bhuvaneswari
O'Sullivan Orla
Fitzgerald Gerald F
Deane Jennifer
O'Connor Michael
Harnedy Norma
O'Connor Kieran
O'Mahony Denis
van Sinderen Douwe
Wallace Martina
Brennan Lorraine
Stanton Catherine
Marchesi Julian R
Fitzgerald Anthony P
Shanahan Fergus
Hill Colin
Ross R Paul
O'Toole Paul W
References (47)
47 references, click to expand
  1. "Mini-mental state". A practical method for grading the cognitive state of patients for the clinician.
    J Psychiatr Res. 1975 Nov;12(3):189-98 PMID: 1202204
  2. The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects.
    Gastroenterology. 2007 Jul;133(1):24-33 PMID: 17631127
  3. Homeostasis and inflammation in the intestine.
    Cell. 2010 Mar 19;140(6):859-70 PMID: 20303876
  4. An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota.
    Gut. 2012 Jul;61(7):997-1006 PMID: 22180058
  5. The inflammatory status of old age can be nurtured from the intestinal environment.
    Curr Opin Clin Nutr Metab Care. 2008 Jan;11(1):13-20 PMID: 18090652
  6. High-fat diet determines the composition of the murine gut microbiome independently of obesity.
    Gastroenterology. 2009 Nov;137(5):1716-24.e1-2 PMID: 19706296
  7. Human nutrition, the gut microbiome and the immune system.
    Nature. 2011 Jun 15;474(7351):327-36 PMID: 21677749
  8. The microbiology of butyrate formation in the human colon.
    FEMS Microbiol Lett. 2002 Dec 17;217(2):133-9 PMID: 12480096
  9. QIIME allows analysis of high-throughput community sequencing data.
    Nat Methods. 2010 May;7(5):335-6 PMID: 20383131
  10. Inflamm-aging. An evolutionary perspective on immunosenescence.
    Ann N Y Acad Sci. 2000 Jun;908:244-54 PMID: 10911963
  11. Dietary intake patterns are reflected in metabolomic profiles: potential role in dietary assessment studies.
    Am J Clin Nutr. 2011 Feb;93(2):314-21 PMID: 21177801
  12. Through ageing, and beyond: gut microbiota and inflammatory status in seniors and centenarians.
    PLoS One. 2010 May 17;5(5):e10667 PMID: 20498852
  13. The Mini Nutritional Assessment--its history, today's practice, and future perspectives.
    Nutr Clin Pract. 2008 Aug-Sep;23(4):388-96 PMID: 18682590
  14. FUNCTIONAL EVALUATION: THE BARTHEL INDEX.
    Md State Med J. 1965 Feb;14:61-5 PMID: 14258950
  15. Associations between dietary habits and body mass index with gut microbiota composition and fecal water genotoxicity: an observational study in African American and Caucasian American volunteers.
    Nutr J. 2009 Oct 21;8:49 PMID: 19845958
  16. The Functional Independence Measure: a comparative validity and reliability study.
    Disabil Rehabil. 1995 Jan;17(1):10-4 PMID: 7858276
  17. Wild bootstrap for quantile regression.
    Biometrika. 2011 Dec;98(4):995-999 PMID: 23049133
  18. How to measure comorbidity. a critical review of available methods.
    J Clin Epidemiol. 2003 Mar;56(3):221-9 PMID: 12725876
  19. A human gut microbial gene catalogue established by metagenomic sequencing.
    Nature. 2010 Mar 4;464(7285):59-65 PMID: 20203603
  20. Probabilistic principal component analysis for metabolomic data.
    BMC Bioinformatics. 2010 Nov 23;11:571 PMID: 21092268
  21. Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans.
    Science. 2011 May 20;332(6032):970-4 PMID: 21596990
  22. Microbial ecology: human gut microbes associated with obesity.
    Nature. 2006 Dec 21;444(7122):1022-3 PMID: 17183309
  23. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
    Appl Environ Microbiol. 2007 Aug;73(16):5261-7 PMID: 17586664
  24. Fast UniFrac: facilitating high-throughput phylogenetic analyses of microbial communities including analysis of pyrosequencing and PhyloChip data.
    ISME J. 2010 Jan;4(1):17-27 PMID: 19710709
  25. Exploring prokaryotic taxonomy.
    Int J Syst Evol Microbiol. 2004 Jan;54(Pt 1):7-13 PMID: 14742453
  26. Metabolomics reveals metabolic biomarkers of Crohn's disease.
    PLoS One. 2009 Jul 28;4(7):e6386 PMID: 19636438
  27. Linking long-term dietary patterns with gut microbial enterotypes.
    Science. 2011 Oct 7;334(6052):105-8 PMID: 21885731
  28. Sarcopenia: European consensus on definition and diagnosis: Report of the European Working Group on Sarcopenia in Older People.
    Age Ageing. 2010 Jul;39(4):412-23 PMID: 20392703
  29. Development and application of the human intestinal tract chip, a phylogenetic microarray: analysis of universally conserved phylotypes in the abundant microbiota of young and elderly adults.
    Environ Microbiol. 2009 Jul;11(7):1736-51 PMID: 19508560
  30. Sociodemographic, health and lifestyle predictors of poor diets.
    Public Health Nutr. 2011 Dec;14(12):2166-75 PMID: 21729473
  31. Age related changes in gut physiology and nutritional status.
    Gut. 1996 Mar;38(3):306-9 PMID: 8675079
  32. Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa.
    Proc Natl Acad Sci U S A. 2010 Aug 17;107(33):14691-6 PMID: 20679230
  33. A new index to measure healthy food diversity better reflects a healthy diet than traditional measures.
    J Nutr. 2007 Mar;137(3):647-51 PMID: 17311954
  34. Using the miraEST assembler for reliable and automated mRNA transcript assembly and SNP detection in sequenced ESTs.
    Genome Res. 2004 Jun;14(6):1147-59 PMID: 15140833
  35. PyNAST: a flexible tool for aligning sequences to a template alignment.
    Bioinformatics. 2010 Jan 15;26(2):266-7 PMID: 19914921
  36. UniFrac: a new phylogenetic method for comparing microbial communities.
    Appl Environ Microbiol. 2005 Dec;71(12):8228-35 PMID: 16332807
  37. Dominant and diet-responsive groups of bacteria within the human colonic microbiota.
    ISME J. 2011 Feb;5(2):220-30 PMID: 20686513
  38. FastTree 2--approximately maximum-likelihood trees for large alignments.
    PLoS One. 2010 Mar 10;5(3):e9490 PMID: 20224823
  39. Predicting a human gut microbiota's response to diet in gnotobiotic mice.
    Science. 2011 Jul 1;333(6038):101-4 PMID: 21596954
  40. Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases.
    Proc Natl Acad Sci U S A. 2007 Aug 21;104(34):13780-5 PMID: 17699621
  41. Fecal microbiota composition and frailty.
    Appl Environ Microbiol. 2005 Oct;71(10):6438-42 PMID: 16204576
  42. Enterotypes of the human gut microbiome.
    Nature. 2011 May 12;473(7346):174-80 PMID: 21508958
  43. Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease.
    Nature. 2011 Apr 7;472(7341):57-63 PMID: 21475195
  44. MetaGene: prokaryotic gene finding from environmental genome shotgun sequences.
    Nucleic Acids Res. 2006;34(19):5623-30 PMID: 17028096
  45. The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice.
    Sci Transl Med. 2009 Nov 11;1(6):6ra14 PMID: 20368178
  46. Comparative analysis of pyrosequencing and a phylogenetic microarray for exploring microbial community structures in the human distal intestine.
    PLoS One. 2009 Aug 20;4(8):e6669 PMID: 19693277
  47. Composition, variability, and temporal stability of the intestinal microbiota of the elderly.
    Proc Natl Acad Sci U S A. 2011 Mar 15;108 Suppl 1:4586-91 PMID: 20571116
Article Info
Journal
Nature
Abbr.
Nature
ISSN
1476-4687
Published
2012-08-09
Pages
178-84
Language
English
Region
England
NLM ID
0410462
Subset
IM
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