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PMID: 22639649 Published · epublish English Journal Article

Adenosine Methylation in Arabidopsis mRNA is Associated with the 3' End and Reduced Levels Cause Developmental Defects.

Frontiers in plant science ·Vol. 3 ·2012-00-00 ·Pages 48

Bodi Z, Zhong S, Mehra S, Song J, Graham N, Li H, May S, Fray RG

Abstract

We previously showed that the N6-methyladenosine (m(6)A) mRNA methylase is essential during Arabidopsis thaliana embryonic development. We also demonstrated that this modification is present at varying levels in all mature tissues. However, the requirement for the m(6)A in the mature plant was not tested. Here we show that a 90% reduction in m(6)A levels during later growth stages gives rise to plants with altered growth patterns and reduced apical dominance. The flowers of these plants commonly show defects in their floral organ number, size, and identity. The global analysis of gene expression from reduced m(6)A plants show that a significant number of down-regulated genes are involved in transport, or targeted transport, and most of the up-regulated genes are involved in stress and stimulus response processes. An analysis of m(6)A distribution in fragmented mRNA suggests that the m(6)A is predominantly positioned toward the 3' end of transcripts in a region 100-150 bp before the poly(A) tail. In addition to the analysis of the phenotypic changes in the low methylation Arabidopsis plants we will review the latest advances in the field of mRNA internal methylation.

Keywords
IME4 METTL3 MT-A70 mRNA methylation post-transcriptional
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Bodi Zsuzsanna
School of Biosciences, University of Nottingham Loughborough, UK.
Zhong Silin
Mehra Surbhi
Song Jie
Graham Neil
Li Hongying
May Sean
Fray Rupert George
References (31)
31 references, click to expand
  1. Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing.
    Mol Cell Biol. 1985 Sep;5(9):2298-306 PMID: 3016525
  2. Methylation of nuclear simian virus 40 RNAs.
    J Virol. 1979 Oct;32(1):52-60 PMID: 232187
  3. Modified nucleosides and bizarre 5'-termini in mouse myeloma mRNA.
    Nature. 1975 May 1;255(5503):28-33 PMID: 1128665
  4. Structure prediction and phylogenetic analysis of a functionally diverse family of proteins homologous to the MT-A70 subunit of the human mRNA:m(6)A methyltransferase.
    J Mol Evol. 2002 Oct;55(4):431-44 PMID: 12355263
  5. N6-methyladenosine in nuclear RNA is a major substrate of the obesity-associated FTO.
    Nat Chem Biol. 2011 Oct 16;7(12):885-7 PMID: 22002720
  6. Localization of N6-methyladenosine in the Rous sarcoma virus genome.
    J Mol Biol. 1977 Jun 15;113(1):165-79 PMID: 196091
  7. Analysis and in vitro localization of internal methylated adenine residues in dihydrofolate reductase mRNA.
    Nucleic Acids Res. 1990 Aug 25;18(16):4803-8 PMID: 2395644
  8. 5'-terminal structures of poly(A)+ cytoplasmic messenger RNA and of poly(A)+ and poly(A)- heterogeneous nuclear RNA of cells of the dipteran Drosophila melanogaster.
    J Mol Biol. 1978 Apr 25;120(4):487-515 PMID: 418182
  9. Yeast targets for mRNA methylation.
    Nucleic Acids Res. 2010 Sep;38(16):5327-35 PMID: 20421205
  10. The immunophilin-interacting protein AtFIP37 from Arabidopsis is essential for plant development and is involved in trichome endoreduplication.
    Plant Physiol. 2004 Apr;134(4):1283-92 PMID: 15047892
  11. Accurate and efficient N-6-adenosine methylation in spliceosomal U6 small nuclear RNA by HeLa cell extract in vitro.
    Nucleic Acids Res. 1995 Jul 11;23(13):2421-6 PMID: 7630720
  12. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction.
    Anal Biochem. 1987 Apr;162(1):156-9 PMID: 2440339
  13. 5'-Terminal and internal methylated nucleotide sequences in HeLa cell mRNA.
    Biochemistry. 1976 Jan 27;15(2):397-401 PMID: 174715
  14. The methylated constituents of L cell messenger RNA: evidence for an unusual cluster at the 5' terminus.
    Cell. 1975 Apr;4(4):387-94 PMID: 1168101
  15. Sequence specificity of mRNA N6-adenosine methyltransferase.
    J Biol Chem. 1990 Nov 25;265(33):20117-22 PMID: 2173695
  16. Genetic dissection of trichome cell development in Arabidopsis.
    Cell. 1994 Feb 11;76(3):555-66 PMID: 8313475
  17. Post-transcriptional modifications of oat coleoptile ribonucleic acids. 5'-Terminal capping and methylation of internal nucleosides in poly(A)-rich RNA.
    Eur J Biochem. 1980 Feb;104(1):271-7 PMID: 6154573
  18. Partial complementation of embryo defective mutations: a general strategy to elucidate gene function.
    Plant J. 2001 Jul;27(2):149-59 PMID: 11489192
  19. Wheat embryo ribonucleates. XIII. Methyl-substituted nucleoside constituents and 5'-terminal dinucleotide sequences in bulk poly(AR)-rich RNA from imbibing wheat embryos.
    Can J Biochem. 1979 Jun;57(6):927-31 PMID: 476526
  20. Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics. 2003 Apr;4(2):249-64 PMID: 12925520
  21. Induction of sporulation in Saccharomyces cerevisiae leads to the formation of N6-methyladenosine in mRNA: a potential mechanism for the activity of the IME4 gene.
    Nucleic Acids Res. 2002 Oct 15;30(20):4509-18 PMID: 12384598
  22. Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast.
    RNA. 2008 Nov;14(11):2333-47 PMID: 18805955
  23. Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts.
    Int J Biochem Cell Biol. 1999 Aug;31(8):837-51 PMID: 10481270
  24. Comparison of methylated sequences in messenger RNA and heterogeneous nuclear RNA from mouse L cells.
    J Mol Biol. 1977 Oct 5;115(4):695-714 PMID: 592376
  25. Drosophila Inducer of MEiosis 4 (IME4) is required for Notch signaling during oogenesis.
    Proc Natl Acad Sci U S A. 2011 Sep 6;108(36):14855-60 PMID: 21873203
  26. Mapping of N6-methyladenosine residues in bovine prolactin mRNA.
    Proc Natl Acad Sci U S A. 1984 Sep;81(18):5667-71 PMID: 6592581
  27. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells.
    Proc Natl Acad Sci U S A. 1974 Oct;71(10):3971-5 PMID: 4372599
  28. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase.
    RNA. 1997 Nov;3(11):1233-47 PMID: 9409616
  29. Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.
    Plant Physiol. 2008 Nov;148(3):1583-602 PMID: 18805951
  30. Sequence specificity of the human mRNA N6-adenosine methylase in vitro.
    Nucleic Acids Res. 1990 Oct 11;18(19):5735-41 PMID: 2216767
  31. MTA is an Arabidopsis messenger RNA adenosine methylase and interacts with a homolog of a sex-specific splicing factor.
    Plant Cell. 2008 May;20(5):1278-88 PMID: 18505803
Article Info
Journal
Frontiers in plant science
Abbr.
Front Plant Sci
ISSN
1664-462X
Published
2012-00-00
Epub
2012-00-23
Pages
48
Language
English
Region
Switzerland
NLM ID
101568200
PMCID
PMC3355605
Grants
Biotechnology and Biological Sciences Research Council · BB/E01772X/1 · United Kingdom
Biotechnology and Biological Sciences Research Council · BBS/B/1356X · United Kingdom
Biotechnology and Biological Sciences Research Council · BB/C513369/1 · United Kingdom
Biotechnology and Biological Sciences Research Council · BB/I001271/1 · United Kingdom
Biotechnology and Biological Sciences Research Council · BB/E022758/1 · United Kingdom
Biotechnology and Biological Sciences Research Council · G17764 · United Kingdom
Biotechnology and Biological Sciences Research Council · G18881 · United Kingdom
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