-
The Air noncoding RNA epigenetically silences transcription by targeting G9a to chromatin.
Science. 2008 Dec 12;322(5908):1717-20
PMID: 18988810
-
The genetic signatures of noncoding RNAs.
PLoS Genet. 2009 Apr;5(4):e1000459
PMID: 19390609
-
The structure and expression of a novel gene activated in early mouse embryogenesis.
EMBO J. 1988 Mar;7(3):673-81
PMID: 3396539
-
Tiny RNAs associated with transcription start sites in animals.
Nat Genet. 2009 May;41(5):572-8
PMID: 19377478
-
A gene from the region of the human X inactivation centre is expressed exclusively from the inactive X chromosome.
Nature. 1991 Jan 3;349(6304):38-44
PMID: 1985261
-
Global identification of human transcribed sequences with genome tiling arrays.
Science. 2004 Dec 24;306(5705):2242-6
PMID: 15539566
-
A large fraction of extragenic RNA pol II transcription sites overlap enhancers.
PLoS Biol. 2010 May 11;8(5):e1000384
PMID: 20485488
-
A ceRNA hypothesis: the Rosetta Stone of a hidden RNA language?
Cell. 2011 Aug 5;146(3):353-8
PMID: 21802130
-
Widespread transcription at neuronal activity-regulated enhancers.
Nature. 2010 May 13;465(7295):182-7
PMID: 20393465
-
Intergenic transcription through a polycomb group response element counteracts silencing.
Genes Dev. 2005 Mar 15;19(6):697-708
PMID: 15741315
-
Chromatin modifications and their function.
Cell. 2007 Feb 23;128(4):693-705
PMID: 17320507
-
Lessons from X-chromosome inactivation: long ncRNA as guides and tethers to the epigenome.
Genes Dev. 2009 Aug 15;23(16):1831-42
PMID: 19684108
-
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses.
Genes Dev. 2011 Sep 15;25(18):1915-27
PMID: 21890647
-
The matrix protein hnRNP U is required for chromosomal localization of Xist RNA.
Dev Cell. 2010 Sep 14;19(3):469-76
PMID: 20833368
-
Many human large intergenic noncoding RNAs associate with chromatin-modifying complexes and affect gene expression.
Proc Natl Acad Sci U S A. 2009 Jul 14;106(28):11667-72
PMID: 19571010
-
The non-coding Air RNA is required for silencing autosomal imprinted genes.
Nature. 2002 Feb 14;415(6873):810-3
PMID: 11845212
-
A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response.
Cell. 2010 Aug 6;142(3):409-19
PMID: 20673990
-
Specific expression of long noncoding RNAs in the mouse brain.
Proc Natl Acad Sci U S A. 2008 Jan 15;105(2):716-21
PMID: 18184812
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.
Nature. 2007 Jun 14;447(7146):799-816
PMID: 17571346
-
The Pfam protein families database.
Nucleic Acids Res. 2010 Jan;38(Database issue):D211-22
PMID: 19920124
-
Long noncoding RNAs with enhancer-like function in human cells.
Cell. 2010 Oct 1;143(1):46-58
PMID: 20887892
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription.
Science. 2007 Jun 8;316(5830):1484-8
PMID: 17510325
-
ncRNA- and Pc2 methylation-dependent gene relocation between nuclear structures mediates gene activation programs.
Cell. 2011 Nov 11;147(4):773-88
PMID: 22078878
-
Genome-wide identification of polycomb-associated RNAs by RIP-seq.
Mol Cell. 2010 Dec 22;40(6):939-53
PMID: 21172659
-
The transcriptional activity of human Chromosome 22.
Genes Dev. 2003 Feb 15;17(4):529-40
PMID: 12600945
-
Identification of a specific telomere terminal transferase activity in Tetrahymena extracts.
Cell. 1985 Dec;43(2 Pt 1):405-13
PMID: 3907856
-
Functionality or transcriptional noise? Evidence for selection within long noncoding RNAs.
Genome Res. 2007 May;17(5):556-65
PMID: 17387145
-
PhyloCSF: a comparative genomics method to distinguish protein coding and non-coding regions.
Bioinformatics. 2011 Jul 1;27(13):i275-82
PMID: 21685081
-
Large intergenic non-coding RNA-RoR modulates reprogramming of human induced pluripotent stem cells.
Nat Genet. 2010 Dec;42(12):1113-7
PMID: 21057500
-
Kcnq1ot1 antisense noncoding RNA mediates lineage-specific transcriptional silencing through chromatin-level regulation.
Mol Cell. 2008 Oct 24;32(2):232-46
PMID: 18951091
-
Requirement for Xist in X chromosome inactivation.
Nature. 1996 Jan 11;379(6561):131-7
PMID: 8538762
-
Ribosome profiling of mouse embryonic stem cells reveals the complexity and dynamics of mammalian proteomes.
Cell. 2011 Nov 11;147(4):789-802
PMID: 22056041
-
Genome-wide maps of chromatin state in pluripotent and lineage-committed cells.
Nature. 2007 Aug 2;448(7153):553-60
PMID: 17603471
-
A long noncoding RNA controls muscle differentiation by functioning as a competing endogenous RNA.
Cell. 2011 Oct 14;147(2):358-69
PMID: 22000014
-
The transcriptional landscape of the mammalian genome.
Science. 2005 Sep 2;309(5740):1559-63
PMID: 16141072
-
Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs.
Cell. 2007 Jun 29;129(7):1311-23
PMID: 17604720
-
Rapidly labeled HeLa cell nuclear RNA. I. Identification by zone sedimentation of a heterogeneous fraction separate from ribosomal precursor RNA.
J Mol Biol. 1966 Aug;19(2):349-61
PMID: 5969070
-
Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis.
Nature. 2010 Apr 15;464(7291):1071-6
PMID: 20393566
-
Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome.
Genome Res. 2006 Jan;16(1):11-9
PMID: 16344565
-
A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression.
Nature. 2011 Apr 7;472(7341):120-4
PMID: 21423168
-
Phosphorylation of the PRC2 component Ezh2 is cell cycle-regulated and up-regulates its binding to ncRNA.
Genes Dev. 2010 Dec 1;24(23):2615-20
PMID: 21123648
-
Repression of the human dihydrofolate reductase gene by a non-coding interfering transcript.
Nature. 2007 Feb 8;445(7128):666-70
PMID: 17237763
-
The H19 transcript is associated with polysomes and may regulate IGF2 expression in trans.
J Biol Chem. 1998 Oct 23;273(43):28247-52
PMID: 9774446
-
Ripples from neighbouring transcription.
Nat Cell Biol. 2008 Sep;10(9):1106-13
PMID: 19160492
-
Higher-order structure in pericentric heterochromatin involves a distinct pattern of histone modification and an RNA component.
Nat Genet. 2002 Mar;30(3):329-34
PMID: 11850619
-
Non-coding RNA genes and the modern RNA world.
Nat Rev Genet. 2001 Dec;2(12):919-29
PMID: 11733745
-
Chromosomal silencing and localization are mediated by different domains of Xist RNA.
Nat Genet. 2002 Feb;30(2):167-74
PMID: 11780141
-
3' end processing of a long nuclear-retained noncoding RNA yields a tRNA-like cytoplasmic RNA.
Cell. 2008 Nov 28;135(5):919-32
PMID: 19041754
-
Functional genomics of genes with small open reading frames (sORFs) in S. cerevisiae.
Genome Res. 2006 Mar;16(3):365-73
PMID: 16510898
-
Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters.
Nat Genet. 2011 Jun 05;43(7):621-9
PMID: 21642992
-
Large heterogeneous nuclear ribonucleic acid has three times as many 5' caps as polyadenylic acid segments, and most caps do not enter polyribosomes.
Mol Cell Biol. 1981 Feb;1(2):179-87
PMID: 6152852
-
High-resolution profiling of histone methylations in the human genome.
Cell. 2007 May 18;129(4):823-37
PMID: 17512414
-
A large number of novel coding small open reading frames in the intergenic regions of the Arabidopsis thaliana genome are transcribed and/or under purifying selection.
Genome Res. 2007 May;17(5):632-40
PMID: 17395691
-
Ab initio reconstruction of cell type-specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs.
Nat Biotechnol. 2010 May;28(5):503-10
PMID: 20436462
-
Yeast telomerase RNA: a flexible scaffold for protein subunits.
Proc Natl Acad Sci U S A. 2004 Jul 6;101(27):10024-9
PMID: 15226497
-
A strategy for probing the function of noncoding RNAs finds a repressor of NFAT.
Science. 2005 Sep 2;309(5740):1570-3
PMID: 16141075
-
MicroRNAs: target recognition and regulatory functions.
Cell. 2009 Jan 23;136(2):215-33
PMID: 19167326
-
Histone modifications at human enhancers reflect global cell-type-specific gene expression.
Nature. 2009 May 7;459(7243):108-12
PMID: 19295514
-
The long noncoding RNA, Jpx, is a molecular switch for X chromosome inactivation.
Cell. 2010 Oct 29;143(3):390-403
PMID: 21029862
-
Interaction of noncoding RNA with the rDNA promoter mediates recruitment of DNMT3b and silencing of rRNA genes.
Genes Dev. 2010 Oct 15;24(20):2264-9
PMID: 20952535
-
Small molecular weight monodisperse nuclear RNA.
J Mol Biol. 1968 Dec;38(3):289-304
PMID: 5718554
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq.
Nat Methods. 2008 Jul;5(7):621-8
PMID: 18516045
-
Genomic maps of long noncoding RNA occupancy reveal principles of RNA-chromatin interactions.
Mol Cell. 2011 Nov 18;44(4):667-78
PMID: 21963238
-
RNA traffic control of chromatin complexes.
Curr Opin Genet Dev. 2010 Apr;20(2):142-8
PMID: 20362426
-
Induced ncRNAs allosterically modify RNA-binding proteins in cis to inhibit transcription.
Nature. 2008 Jul 3;454(7200):126-30
PMID: 18509338
-
Distinguishing protein-coding and noncoding genes in the human genome.
Proc Natl Acad Sci U S A. 2007 Dec 4;104(49):19428-33
PMID: 18040051
-
Transcriptional noise and the fidelity of initiation by RNA polymerase II.
Nat Struct Mol Biol. 2007 Feb;14(2):103-5
PMID: 17277804
-
Xist RNA and the mechanism of X chromosome inactivation.
Annu Rev Genet. 2002;36:233-78
PMID: 12429693
-
Mapping and analysis of chromatin state dynamics in nine human cell types.
Nature. 2011 May 5;473(7345):43-9
PMID: 21441907
-
Large-scale transcriptional activity in chromosomes 21 and 22.
Science. 2002 May 3;296(5569):916-9
PMID: 11988577
-
The imprinted H19 noncoding RNA is a primary microRNA precursor.
RNA. 2007 Mar;13(3):313-6
PMID: 17237358
-
Polycomb proteins targeted by a short repeat RNA to the mouse X chromosome.
Science. 2008 Oct 31;322(5902):750-6
PMID: 18974356
-
The ribosome in focus: new structures bring new insights.
Trends Biochem Sci. 2007 Sep;32(9):434-41
PMID: 17764954
-
Noncoding RNA gas5 is a growth arrest- and starvation-associated repressor of the glucocorticoid receptor.
Sci Signal. 2010 Feb 02;3(107):ra8
PMID: 20124551
-
Long noncoding RNA as modular scaffold of histone modification complexes.
Science. 2010 Aug 6;329(5992):689-93
PMID: 20616235
-
Cell-type specific analysis of translating RNAs in developing flowers reveals new levels of control.
Mol Syst Biol. 2010 Oct 5;6:419
PMID: 20924354
-
Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals.
Nature. 2009 Mar 12;458(7235):223-7
PMID: 19182780
-
Differentiating protein-coding and noncoding RNA: challenges and ambiguities.
PLoS Comput Biol. 2008 Nov;4(11):e1000176
PMID: 19043537
-
Intergenic transcription is required to repress the Saccharomyces cerevisiae SER3 gene.
Nature. 2004 Jun 3;429(6991):571-4
PMID: 15175754
-
ChIP-seq accurately predicts tissue-specific activity of enhancers.
Nature. 2009 Feb 12;457(7231):854-8
PMID: 19212405
-
The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator.
Genes Dev. 2006 Jun 1;20(11):1470-84
PMID: 16705037
-
The noncoding RNA Mistral activates Hoxa6 and Hoxa7 expression and stem cell differentiation by recruiting MLL1 to chromatin.
Mol Cell. 2011 Sep 16;43(6):1040-6
PMID: 21925392
-
Divergent transcription from active promoters.
Science. 2008 Dec 19;322(5909):1849-51
PMID: 19056940
-
Performance and scalability of discriminative metrics for comparative gene identification in 12 Drosophila genomes.
PLoS Comput Biol. 2008 Apr 18;4(4):e1000067
PMID: 18421375
-
Peptides encoded by short ORFs control development and define a new eukaryotic gene family.
PLoS Biol. 2007 May;5(5):e106
PMID: 17439302
-
Small RNA species of the HeLa cell: metabolism and subcellular localization.
Cell. 1976 May;8(1):19-31
PMID: 954090
-
Reverse transcriptase motifs in the catalytic subunit of telomerase.
Science. 1997 Apr 25;276(5312):561-7
PMID: 9110970
-
The RNA component of human telomerase.
Science. 1995 Sep 1;269(5228):1236-41
PMID: 7544491
-
The product of the mouse Xist gene is a 15 kb inactive X-specific transcript containing no conserved ORF and located in the nucleus.
Cell. 1992 Oct 30;71(3):515-26
PMID: 1423610
-
Small peptides switch the transcriptional activity of Shavenbaby during Drosophila embryogenesis.
Science. 2010 Jul 16;329(5989):336-9
PMID: 20647469
-
The noncoding RNA taurine upregulated gene 1 is required for differentiation of the murine retina.
Curr Biol. 2005 Mar 29;15(6):501-12
PMID: 15797018
-
YY1 tethers Xist RNA to the inactive X nucleation center.
Cell. 2011 Jul 8;146(1):119-33
PMID: 21729784
-
Genomic and transcriptional co-localization of protein-coding and long non-coding RNA pairs in the developing brain.
PLoS Genet. 2009 Aug;5(8):e1000617
PMID: 19696892
-
The product of the H19 gene may function as an RNA.
Mol Cell Biol. 1990 Jan;10(1):28-36
PMID: 1688465
-
The function of non-coding RNAs in genomic imprinting.
Development. 2009 Jun;136(11):1771-83
PMID: 19429783
-
Mouse polycomb proteins bind differentially to methylated histone H3 and RNA and are enriched in facultative heterochromatin.
Mol Cell Biol. 2006 Apr;26(7):2560-9
PMID: 16537902
-
lincRNAs act in the circuitry controlling pluripotency and differentiation.
Nature. 2011 Aug 28;477(7364):295-300
PMID: 21874018
-
The genomic binding sites of a noncoding RNA.
Proc Natl Acad Sci U S A. 2011 Dec 20;108(51):20497-502
PMID: 22143764
-
Dissecting self-renewal in stem cells with RNA interference.
Nature. 2006 Aug 3;442(7102):533-8
PMID: 16767105