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PMID: 21445324 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A high precision survey of the molecular dynamics of mammalian clathrin-mediated endocytosis.

PLoS biology ·Vol. 9 ·No. 3 ·2011-03-00 ·Pages e1000604

Taylor MJ, Perrais D, Merrifield CJ

Abstract

Dual colour total internal reflection fluorescence microscopy is a powerful tool for decoding the molecular dynamics of clathrin-mediated endocytosis (CME). Typically, the recruitment of a fluorescent protein-tagged endocytic protein was referenced to the disappearance of spot-like clathrin-coated structure (CCS), but the precision of spot-like CCS disappearance as a marker for canonical CME remained unknown. Here we have used an imaging assay based on total internal reflection fluorescence microscopy to detect scission events with a resolution of ∼ 2 s. We found that scission events engulfed comparable amounts of transferrin receptor cargo at CCSs of different sizes and CCS did not always disappear following scission. We measured the recruitment dynamics of 34 types of endocytic protein to scission events: Abp1, ACK1, amphiphysin1, APPL1, Arp3, BIN1, CALM, CIP4, clathrin light chain (Clc), cofilin, coronin1B, cortactin, dynamin1/2, endophilin2, Eps15, Eps8, epsin2, FBP17, FCHo1/2, GAK, Hip1R, lifeAct, mu2 subunit of the AP2 complex, myosin1E, myosin6, NECAP, N-WASP, OCRL1, Rab5, SNX9, synaptojanin2β1, and syndapin2. For each protein we aligned ∼ 1,000 recruitment profiles to their respective scission events and constructed characteristic "recruitment signatures" that were grouped, as for yeast, to reveal the modular organization of mammalian CME. A detailed analysis revealed the unanticipated recruitment dynamics of SNX9, FBP17, and CIP4 and showed that the same set of proteins was recruited, in the same order, to scission events at CCSs of different sizes and lifetimes. Collectively these data reveal the fine-grained temporal structure of CME and suggest a simplified canonical model of mammalian CME in which the same core mechanism of CME, involving actin, operates at CCSs of diverse sizes and lifetimes.

MeSH Terms
Actins/metabolism Adaptor Proteins, Signal Transducing/metabolism Animals Clathrin/metabolism Coated Pits, Cell-Membrane/metabolism Dynamins/metabolism Endocytosis Mammals/metabolism Mice Molecular Dynamics Simulation Myosins/metabolism NIH 3T3 Cells Polymerization Protein Binding Protein Structure, Tertiary Time Factors
Chemicals
Actins Adaptor Proteins, Signal Transducing Clathrin Myosins Dynamins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Taylor Marcus J
Medical Research Council Laboratory of Molecular Biology, Cambridge, United Kingdom.
Perrais David
Merrifield Christien J
Conflict of Interest

The authors have declared that no competing interests exist.

References (79)
79 references, click to expand
  1. Structure and analysis of FCHo2 F-BAR domain: a dimerizing and membrane recruitment module that effects membrane curvature.
    Structure. 2007 Jul;15(7):839-52 PMID: 17540576
  2. Functional analysis of AP-2 alpha and mu2 subunits.
    Mol Biol Cell. 2006 Dec;17(12):5298-308 PMID: 17035630
  3. Identification and characterization of a synaptojanin 2 splice isoform predominantly expressed in nerve terminals.
    J Biol Chem. 2001 Nov 2;276(44):41133-42 PMID: 11498538
  4. Spatial control of coated-pit dynamics in living cells.
    Nat Cell Biol. 1999 May;1(1):1-7 PMID: 10559856
  5. A burst of auxilin recruitment determines the onset of clathrin-coated vesicle uncoating.
    Proc Natl Acad Sci U S A. 2006 Jul 5;103(27):10265-10270 PMID: 16798879
  6. Quantitative analysis of the mechanism of endocytic actin patch assembly and disassembly in fission yeast.
    Mol Biol Cell. 2010 Aug 15;21(16):2894-904 PMID: 20587778
  7. Loss of endocytic clathrin-coated pits upon acute depletion of phosphatidylinositol 4,5-bisphosphate.
    Proc Natl Acad Sci U S A. 2007 Mar 6;104(10):3793-8 PMID: 17360432
  8. Improving the photostability of bright monomeric orange and red fluorescent proteins.
    Nat Methods. 2008 Jun;5(6):545-51 PMID: 18454154
  9. Activated tyrosine kinase Ack1 promotes prostate tumorigenesis: role of Ack1 in polyubiquitination of tumor suppressor Wwox.
    Cancer Res. 2005 Nov 15;65(22):10514-23 PMID: 16288044
  10. Dynamin and the actin cytoskeleton cooperatively regulate plasma membrane invagination by BAR and F-BAR proteins.
    Dev Cell. 2005 Dec;9(6):791-804 PMID: 16326391
  11. Dynasore, a cell-permeable inhibitor of dynamin.
    Dev Cell. 2006 Jun;10(6):839-50 PMID: 16740485
  12. Mechanisms of membrane deformation by lipid-binding domains.
    Prog Lipid Res. 2009 Sep;48(5):298-305 PMID: 19481110
  13. Coupling between clathrin-coated-pit invagination, cortactin recruitment, and membrane scission observed in live cells.
    Cell. 2005 May 20;121(4):593-606 PMID: 15907472
  14. Imaging actin and dynamin recruitment during invagination of single clathrin-coated pits.
    Nat Cell Biol. 2002 Sep;4(9):691-8 PMID: 12198492
  15. A phosphoinositide switch controls the maturation and signaling properties of APPL endosomes.
    Cell. 2009 Mar 20;136(6):1110-21 PMID: 19303853
  16. Differential requirements for clathrin-dependent endocytosis at sites of cell-substrate adhesion.
    Mol Biol Cell. 2010 Sep 1;21(17):3070-9 PMID: 20631253
  17. Neural Wiskott Aldrich Syndrome Protein (N-WASP) and the Arp2/3 complex are recruited to sites of clathrin-mediated endocytosis in cultured fibroblasts.
    Eur J Cell Biol. 2004 Feb;83(1):13-8 PMID: 15085951
  18. Myosin 1E interacts with synaptojanin-1 and dynamin and is involved in endocytosis.
    FEBS Lett. 2007 Feb 20;581(4):644-50 PMID: 17257598
  19. Visualization of caveolin-1, a caveolar marker protein, in living cells using green fluorescent protein (GFP) chimeras. The subcellular distribution of caveolin-1 is modulated by cell-cell contact.
    FEBS Lett. 1999 Feb 26;445(2-3):431-9 PMID: 10094502
  20. Mechanisms of endocytosis.
    Annu Rev Biochem. 2009;78:857-902 PMID: 19317650
  21. Cargo- and adaptor-specific mechanisms regulate clathrin-mediated endocytosis.
    J Cell Biol. 2010 Mar 22;188(6):919-33 PMID: 20231386
  22. Actin-cytoskeleton dynamics in non-monotonic cell spreading.
    Cell Adh Migr. 2008 Apr-May;2(2):58-68 PMID: 19262103
  23. Induction of mutant dynamin specifically blocks endocytic coated vesicle formation.
    J Cell Biol. 1994 Nov;127(4):915-34 PMID: 7962076
  24. Endocytic accessory proteins are functionally distinguished by their differential effects on the maturation of clathrin-coated pits.
    Mol Biol Cell. 2009 Jul;20(14):3251-60 PMID: 19458185
  25. Cofilin, but not profilin, is required for myosin-I-induced actin polymerization and the endocytic uptake in yeast.
    Mol Biol Cell. 2002 Nov;13(11):4074-87 PMID: 12429847
  26. Actin microfilaments play a critical role in endocytosis at the apical but not the basolateral surface of polarized epithelial cells.
    J Cell Biol. 1993 Feb;120(3):695-710 PMID: 8381123
  27. Coordinated actions of actin and BAR proteins upstream of dynamin at endocytic clathrin-coated pits.
    Dev Cell. 2009 Dec;17(6):811-22 PMID: 20059951
  28. Recruitment dynamics of GAK and auxilin to clathrin-coated pits during endocytosis.
    J Cell Sci. 2006 Sep 1;119(Pt 17):3502-12 PMID: 16895969
  29. Mammalian Abp1, a signal-responsive F-actin-binding protein, links the actin cytoskeleton to endocytosis via the GTPase dynamin.
    J Cell Biol. 2001 Apr 16;153(2):351-66 PMID: 11309416
  30. Myosin VI targeting to clathrin-coated structures and dimerization is mediated by binding to Disabled-2 and PtdIns(4,5)P2.
    Nat Cell Biol. 2007 Feb;9(2):176-83 PMID: 17187061
  31. Role of lipids and actin in the formation of clathrin-coated pits.
    Exp Cell Res. 2006 Dec 10;312(20):4036-48 PMID: 17097636
  32. Cargo and dynamin regulate clathrin-coated pit maturation.
    PLoS Biol. 2009 Mar 17;7(3):e57 PMID: 19296720
  33. Understanding living clathrin-coated pits.
    Traffic. 2004 May;5(5):327-37 PMID: 15086782
  34. Converging views of endocytosis in yeast and mammals.
    Curr Opin Cell Biol. 2010 Aug;22(4):513-8 PMID: 20538447
  35. The mechanochemistry of endocytosis.
    PLoS Biol. 2009 Sep;7(9):e1000204 PMID: 19787029
  36. Distinct roles for Arp2/3 regulators in actin assembly and endocytosis.
    PLoS Biol. 2008 Jan;6(1):e1 PMID: 18177206
  37. Distinct dynamics of endocytic clathrin-coated pits and coated plaques.
    PLoS Biol. 2009 Sep;7(9):e1000191 PMID: 19809571
  38. A dynamic actin cytoskeleton functions at multiple stages of clathrin-mediated endocytosis.
    Mol Biol Cell. 2005 Feb;16(2):964-75 PMID: 15601897
  39. Focusing on clathrin-mediated endocytosis.
    Biochem J. 2008 Jun 15;412(3):415-23 PMID: 18498251
  40. Differential expression and regulation of multiple dynamins.
    J Biol Chem. 1994 Feb 11;269(6):4547-54 PMID: 8308025
  41. Eps8 controls actin-based motility by capping the barbed ends of actin filaments.
    Nat Cell Biol. 2004 Dec;6(12):1180-8 PMID: 15558031
  42. Molecular mechanism of membrane constriction and tubulation mediated by the F-BAR protein Pacsin/Syndapin.
    Proc Natl Acad Sci U S A. 2009 Aug 4;106(31):12700-5 PMID: 19549836
  43. Two synaptojanin 1 isoforms are recruited to clathrin-coated pits at different stages.
    Proc Natl Acad Sci U S A. 2006 Dec 19;103(51):19332-7 PMID: 17158794
  44. Dynamics of endocytic vesicle creation.
    Dev Cell. 2005 Nov;9(5):581-92 PMID: 16256734
  45. BAR domains as sensors of membrane curvature: the amphiphysin BAR structure.
    Science. 2004 Jan 23;303(5657):495-9 PMID: 14645856
  46. Role of cyclin G-associated kinase in uncoating clathrin-coated vesicles from non-neuronal cells.
    J Biol Chem. 2000 Jan 14;275(2):1365-70 PMID: 10625686
  47. FCHo proteins are nucleators of clathrin-mediated endocytosis.
    Science. 2010 Jun 4;328(5983):1281-4 PMID: 20448150
  48. A role of the Lowe syndrome protein OCRL in early steps of the endocytic pathway.
    Dev Cell. 2007 Sep;13(3):377-90 PMID: 17765681
  49. The NECAP PHear domain increases clathrin accessory protein binding potential.
    EMBO J. 2007 Sep 19;26(18):4066-77 PMID: 17762867
  50. Endocytosis by random initiation and stabilization of clathrin-coated pits.
    Cell. 2004 Sep 3;118(5):591-605 PMID: 15339664
  51. Mechanochemical crosstalk during endocytic vesicle formation.
    Curr Opin Cell Biol. 2010 Feb;22(1):36-43 PMID: 20022735
  52. Mutations in human dynamin block an intermediate stage in coated vesicle formation.
    J Cell Biol. 1993 Aug;122(3):553-63 PMID: 8101525
  53. A real-time view of life within 100 nm of the plasma membrane.
    Nat Rev Mol Cell Biol. 2001 Apr;2(4):268-75 PMID: 11283724
  54. Curved EFC/F-BAR-domain dimers are joined end to end into a filament for membrane invagination in endocytosis.
    Cell. 2007 May 18;129(4):761-72 PMID: 17512409
  55. Real-time visualization of dynamin-catalyzed membrane fission and vesicle release.
    Cell. 2008 Dec 26;135(7):1263-75 PMID: 19084268
  56. Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein.
    Nat Biotechnol. 2004 Dec;22(12):1567-72 PMID: 15558047
  57. A modular design for the clathrin- and actin-mediated endocytosis machinery.
    Cell. 2005 Oct 21;123(2):305-20 PMID: 16239147
  58. Overlapping and distinct functions for cofilin, coronin and Aip1 in actin dynamics in vivo.
    J Cell Sci. 2010 Apr 15;123(Pt 8):1329-42 PMID: 20332110
  59. The AP-2 complex is excluded from the dynamic population of plasma membrane-associated clathrin.
    J Biol Chem. 2003 Nov 28;278(48):47357-60 PMID: 14530274
  60. Simultaneous binding of PtdIns(4,5)P2 and clathrin by AP180 in the nucleation of clathrin lattices on membranes.
    Science. 2001 Feb 9;291(5506):1051-5 PMID: 11161218
  61. Dynamics of dynamin during clathrin mediated endocytosis in PC12 cells.
    PLoS One. 2008 Jun 11;3(6):e2416 PMID: 18545672
  62. A monomeric red fluorescent protein.
    Proc Natl Acad Sci U S A. 2002 Jun 11;99(12):7877-82 PMID: 12060735
  63. GTPase cycle of dynamin is coupled to membrane squeeze and release, leading to spontaneous fission.
    Cell. 2008 Dec 26;135(7):1276-86 PMID: 19084269
  64. Differential requirements for actin during yeast and mammalian endocytosis.
    Nat Cell Biol. 2009 Aug;11(8):1039-42 PMID: 19597484
  65. Coated vesicles from human placenta carry ferritin, transferrin, and immunoglobulin G.
    Proc Natl Acad Sci U S A. 1982 Jan;79(2):451-5 PMID: 6952195
  66. "Wunder" F-BAR domains: going from pits to vesicles.
    Cell. 2007 May 18;129(4):655-7 PMID: 17512400
  67. Improved preservation and staining of HeLa cell actin filaments, clathrin-coated membranes, and other cytoplasmic structures by tannic acid-glutaraldehyde-saponin fixation.
    J Cell Biol. 1983 Jan;96(1):51-62 PMID: 6186673
  68. Curvature of clathrin-coated pits driven by epsin.
    Nature. 2002 Sep 26;419(6905):361-6 PMID: 12353027
  69. Differential evanescence nanometry: live-cell fluorescence measurements with 10-nm axial resolution on the plasma membrane.
    Biophys J. 2008 Mar 15;94(6):2333-42 PMID: 17993495
  70. Three-dimensional visualization of coated vesicle formation in fibroblasts.
    J Cell Biol. 1980 Mar;84(3):560-83 PMID: 6987244
  71. Imaging endocytic clathrin structures in living cells.
    Trends Cell Biol. 2009 Nov;19(11):596-605 PMID: 19836955
  72. N-WASP deficiency impairs EGF internalization and actin assembly at clathrin-coated pits.
    J Cell Sci. 2005 Jul 15;118(Pt 14):3103-15 PMID: 15985465
  73. The actin-binding protein Hip1R associates with clathrin during early stages of endocytosis and promotes clathrin assembly in vitro.
    J Cell Biol. 2001 Sep 17;154(6):1209-23 PMID: 11564758
  74. Syndapin oligomers interconnect the machineries for endocytic vesicle formation and actin polymerization.
    J Biol Chem. 2006 May 12;281(19):13285-13299 PMID: 16540475
  75. Cofilin interacts with ClC-5 and regulates albumin uptake in proximal tubule cell lines.
    J Biol Chem. 2003 Oct 10;278(41):40169-76 PMID: 12904289
  76. Robust single-particle tracking in live-cell time-lapse sequences.
    Nat Methods. 2008 Aug;5(8):695-702 PMID: 18641657
  77. SNX9 regulates dynamin assembly and is required for efficient clathrin-mediated endocytosis.
    Mol Biol Cell. 2005 Apr;16(4):2058-67 PMID: 15703209
  78. Coupling between clathrin-dependent endocytic budding and F-BAR-dependent tubulation in a cell-free system.
    Nat Cell Biol. 2010 Sep;12(9):902-8 PMID: 20729836
  79. Distinct clathrin-coated pits sort different G protein-coupled receptor cargo.
    Traffic. 2006 Oct;7(10):1420-31 PMID: 16899088
Article Info
Journal
PLoS biology
Abbr.
PLoS Biol
ISSN
1545-7885
Published
2011-03-00
Epub
2011-00-22
Pages
e1000604
Language
English
Region
United States
NLM ID
101183755
PMCID
PMC3062526
Subset
IM
Grants
Medical Research Council · MC_U105178789 · United Kingdom
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