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PMID: 2110138 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Cloning and characterization of the hemA region of the Bacillus subtilis chromosome.

Journal of bacteriology ·Vol. 172 ·No. 5 ·1990-05-00 ·Pages 2250-8

Petricek M, Rutberg L, Schröder I, Hederstedt L

Abstract

A 3.8-kilobase DNA fragment from Bacillus subtilis containing the hemA gene has been cloned and sequenced. Four open reading frames were identified. The first is hemA, encoding a protein of 50.8 kilodaltons. The primary defect of a B. subtilis 5-aminolevulinic acid-requiring mutant was identified as a cysteine-to-tyrosine substitution in the HemA protein. The predicted amino acid sequence of the B. subtilis HemA protein showed 34% identity with the Escherichia coli HemA protein, which is known to code for the NAD(P)H:glutamyl-tRNA reductase of the C5 pathway for 5-aminolevulinic acid synthesis. The B. subtilis HemA protein also complements the defect of an E. coli hemA mutant. The second open reading frame in the cloned fragment, called ORF2, codes for a protein of about 30 kilodaltons with unknown function. It is not the proposed hemB gene product porphobilinogen synthase. The third open reading frame is hemC, coding for porphobilinogen deaminase. The fourth open reading frame extends past the sequenced fragment and may be identical to hemD, coding for uroporphyrinogen III cosynthase. Analysis of deletion mutants of the hemA region suggests that (at least) hemA, ORF2, and hemC may be part of an operon.

MeSH Terms
Aldehyde Oxidoreductases/genetics Amino Acid Sequence Bacillus subtilis/genetics,growth & development Bacterial Proteins/genetics Base Sequence Chromosome Deletion Chromosomes, Bacterial Cloning, Molecular Escherichia coli/genetics Genes, Bacterial Heme/biosynthesis Molecular Sequence Data Mutation Plasmids Restriction Mapping Sequence Homology, Nucleic Acid
Chemicals
Bacterial Proteins Heme Aldehyde Oxidoreductases glutamyl tRNA reductase
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Petricek M
Department of Microbiology, University of Lund, Sweden.
Rutberg L
Schröder I
Hederstedt L
References (63)
63 references, click to expand
  1. Isolation and nucleotide sequence of the hemA gene of Escherichia coli K12.
    Mol Gen Genet. 1989 Apr;216(2-3):347-52 PMID: 2664455
  2. Molecular cloning and complete primary sequence of human erythrocyte porphobilinogen deaminase.
    Nucleic Acids Res. 1986 Aug 11;14(15):5955-68 PMID: 2875434
  3. Cloning and expression in Escherichia coli of sdhA, the structural gene for cytochrome b558 of the Bacillus subtilis succinate dehydrogenase complex.
    J Bacteriol. 1985 Jun;162(3):1180-5 PMID: 2987185
  4. Changes in terminal respiratory pathways of Bacillus subtilis during germination, outgrowth and vegetative growth.
    J Bacteriol. 1971 Nov;108(2):652-61 PMID: 4331498
  5. Linear sequential arrangement of genes for the biosynthetic pathway of protoheme in Staphylococcus aureus.
    Proc Natl Acad Sci U S A. 1968 Dec;61(4):1392-8 PMID: 4236816
  6. Rapid and efficient cosmid cloning.
    Nucleic Acids Res. 1981 Jul 10;9(13):2989-98 PMID: 6269067
  7. The nucleotide sequence of the HEM1 gene and evidence for a precursor form of the mitochondrial 5-aminolevulinate synthase in Saccharomyces cerevisiae.
    Eur J Biochem. 1986 May 2;156(3):511-9 PMID: 3516694
  8. Site-directed mutagenesis and high-resolution NMR spectroscopy of the active site of porphobilinogen deaminase.
    Biochemistry. 1988 Oct 18;27(21):7984-90 PMID: 3069124
  9. Organization of the terminal two enzymes of the heme biosynthetic pathway. Orientation of protoporphyrinogen oxidase and evidence for a membrane complex.
    J Biol Chem. 1988 Mar 15;263(8):3835-9 PMID: 3346226
  10. Isolation and some characteristics of haemin dependent mutants of Bacillus subtilis.
    J Gen Microbiol. 1967 Oct;49(1):31-40 PMID: 4965055
  11. Control of 5-aminolevulinate synthase in animals.
    Curr Top Cell Regul. 1986;28:233-62 PMID: 3539534
  12. Distribution of delta-aminolevulinic acid biosynthetic pathways among phototrophic bacterial groups.
    Arch Microbiol. 1989;151(6):513-9 PMID: 2789025
  13. Cloning and characterization of the 5-aminolevulinate synthase gene(s) from Rhodobacter sphaeroides.
    Gene. 1988 Oct 15;70(1):139-51 PMID: 3266489
  14. A simple method for displaying the hydropathic character of a protein.
    J Mol Biol. 1982 May 5;157(1):105-32 PMID: 7108955
  15. Transformation in Bacillus subtilis. Fate of newly introduced transforming DNA.
    Mol Gen Genet. 1973;123(2):185-98 PMID: 4199220
  16. delta-Aminolevulinic acid biosynthesis in Escherichia coli and Bacillus subtilis involves formation of glutamyl-tRNA.
    FEMS Microbiol Lett. 1989 Aug;51(3):255-9 PMID: 2511063
  17. Purification and characterization of murine protoporphyrinogen oxidase.
    Biochemistry. 1987 May 19;26(10):2697-701 PMID: 3606986
  18. Heme-deficient mutants of Salmonella typhimurium: two genes required for ALA synthesis.
    Mol Gen Genet. 1989 Apr;216(2-3):303-14 PMID: 2664454
  19. Mapping the -aminolaevulinic acid synthetase locus in Bacillus subtilis.
    J Gen Microbiol. 1971 May;66(2):153-9 PMID: 4999072
  20. Cloning, genetic characterization, and nucleotide sequence of the hemA-prfA operon of Salmonella typhimurium.
    J Bacteriol. 1989 Jul;171(7):3948-60 PMID: 2544564
  21. Regulation of 5-aminolevulinate synthase mRNA in different rat tissues.
    J Biol Chem. 1988 Apr 15;263(11):5202-9 PMID: 3356687
  22. Replication and incompatibility properties of plasmid pUB110 in Bacillus subtilis.
    Mol Gen Genet. 1988 May;212(2):232-40 PMID: 2841567
  23. Bacterial evolution.
    Microbiol Rev. 1987 Jun;51(2):221-71 PMID: 2439888
  24. Insertional mutagenesis in Bacillus subtilis: mechanism and use in gene cloning.
    Gene. 1982 Oct;19(3):277-84 PMID: 6295881
  25. Construction and characterization of new cloning vehicles. I. Ampicillin-resistant derivatives of the plasmid pMB9.
    Gene. 1977;2(2):75-93 PMID: 344136
  26. Characterization of the yeast HEM2 gene and transcriptional regulation of COX5 and COR1 by heme.
    J Biol Chem. 1987 Dec 15;262(35):16822-9 PMID: 2445751
  27. Cloning and structure of the hem A gene of Escherichia coli K-12.
    Gene. 1989 Oct 30;82(2):209-17 PMID: 2684779
  28. Structure of the Bradyrhizobium japonicum gene hemA encoding 5-aminolevulinic acid synthase.
    Gene. 1987;54(1):133-9 PMID: 3609750
  29. Mapping of a new hem gene in Escherichia coli K12.
    J Gen Microbiol. 1979 Aug;113(2):297-303 PMID: 390093
  30. Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli.
    Plasmid. 1984 Jul;12(1):19-36 PMID: 6387733
  31. Locus determining the synthesis of delta-aminolevulinic acid in Escherichia coli K-12.
    J Bacteriol. 1968 Nov;96(5):1882-4 PMID: 4882033
  32. tRNA(Glu) as a cofactor in delta-aminolevulinate biosynthesis: steps that regulate chlorophyll synthesis.
    Trends Biochem Sci. 1988 Apr;13(4):139-43 PMID: 3075378
  33. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  34. Isolation, nucleotide sequence, and preliminary characterization of the Escherichia coli K-12 hemA gene.
    J Bacteriol. 1989 Sep;171(9):4728-35 PMID: 2548996
  35. Human delta-aminolevulinate dehydratase: nucleotide sequence of a full-length cDNA clone.
    Proc Natl Acad Sci U S A. 1986 Oct;83(20):7703-7 PMID: 3463993
  36. Genetic and biochemical analysis of haemin dependent mutants of Bacillus subtilis.
    Acta Microbiol Acad Sci Hung. 1975;22(2):157-67 PMID: 804803
  37. Mutations affecting porphyrin biosynthesis in Escherichia coli.
    Enzyme. 1973;16(1):65-73 PMID: 4598342
  38. Mapping the uroporphyrinogen III cosynthase locus in Bacillus subtilis.
    Mol Gen Genet. 1979 Jul 24;174(3):293-5 PMID: 113648
  39. Nucleotide sequence of the hemB gene of Escherichia coli K12.
    Mol Gen Genet. 1988 Nov;214(3):503-8 PMID: 2464127
  40. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  41. Role of heme in synthesis and membrane binding of succinic dehydrogenase in Bacillus subtilis.
    J Bacteriol. 1979 May;138(2):377-82 PMID: 108259
  42. Sequence of human 5-aminolevulinate synthase cDNA.
    Nucleic Acids Res. 1987 Oct 26;15(20):8563 PMID: 3671094
  43. Nucleotide sequence of the hemC locus encoding porphobilinogen deaminase of Escherichia coli K12.
    Nucleic Acids Res. 1986 Aug 11;14(15):6215-26 PMID: 3529035
  44. Nucleotide sequence of mouse 5-aminolevulinic acid synthase cDNA and expression of its gene in hepatic and erythroid tissues.
    Gene. 1986;48(1):55-63 PMID: 3557128
  45. Isolation of haemin-requiring mutants of Escherichia coli K12.
    J Gen Microbiol. 1979 Jul;113(1):155-64 PMID: 387909
  46. TRANSFORMATION OF BIOCHEMICALLY DEFICIENT STRAINS OF BACILLUS SUBTILIS BY DEOXYRIBONUCLEATE.
    Proc Natl Acad Sci U S A. 1958 Oct 15;44(10):1072-8 PMID: 16590310
  47. The structure of the Escherichia coli hemB gene.
    Gene. 1989 Jan 30;75(1):177-84 PMID: 2656410
  48. Nucleotide sequence of hemD, the second gene in the hem operon of Escherichia coli K-12.
    Nucleic Acids Res. 1987 Dec 23;15(24):10583 PMID: 3320969
  49. 5-Aminolevulinic acid formation from glutamate via the C5 pathway in Clostridium thermoaceticum.
    FEBS Lett. 1988 Feb 8;228(1):89-93 PMID: 3342879
  50. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  51. Hemin-deficient mutants of Salmonella typhimurium.
    J Bacteriol. 1970 May;102(2):531-6 PMID: 4911544
  52. Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site.
    Cell. 1983 Apr;32(4):1279-86 PMID: 6301690
  53. Molecular cloning and sequencing of the hemD gene of Escherichia coli K-12 and preliminary data on the Uro operon.
    J Bacteriol. 1987 Sep;169(9):4257-62 PMID: 3040684
  54. Cloning of the Escherichia coli K-12 hemB gene.
    J Bacteriol. 1988 Feb;170(2):1021-5 PMID: 3276659
  55. The Biosynthesis of delta-Aminolevulinic Acid in Higher Plants: II. Formation of C-delta-Aminolevulinic Acid from Labeled Precursors in Greening Plant Tissues.
    Plant Physiol. 1974 Feb;53(2):297-303 PMID: 16658694
  56. Biosynthesis of membrane-bound nitrate reductase in Escherichia coli: evidence for a soluble precursor.
    J Bacteriol. 1976 Apr;126(1):122-31 PMID: 770417
  57. Hemes, chlorophylls, and related compounds: biosynthesis and metabolic regulation.
    Adv Enzymol Relat Areas Mol Biol. 1978;46:33-203 PMID: 345768
  58. Calcium-dependent bacteriophage DNA infection.
    J Mol Biol. 1970 Oct 14;53(1):159-62 PMID: 4922220
  59. The low polarity of many membrane proteins.
    Proc Natl Acad Sci U S A. 1972 Apr;69(4):930-2 PMID: 4502942
  60. Molecular weight determination of protein-dodecyl sulfate complexes by gel electrophoresis in a discontinuous buffer system.
    J Biol Chem. 1971 Oct 25;246(20):6328-34 PMID: 5127429
  61. Identification of the enzymatic basis for delta-aminolevulinic acid auxotrophy in a hemA mutant of Escherichia coli.
    J Bacteriol. 1989 Jun;171(6):2919-24 PMID: 2656630
  62. Prediction of the occurrence of the ADP-binding beta alpha beta-fold in proteins, using an amino acid sequence fingerprint.
    J Mol Biol. 1986 Jan 5;187(1):101-7 PMID: 3959077
  63. Purification and partial amino acid sequence of the glutamate 1-semialdehyde aminotransferase of barley and synechococcus.
    Carlsberg Res Commun. 1989;54(2):67-79 PMID: 2505791
Article Info
Journal
Journal of bacteriology
Abbr.
J Bacteriol
ISSN
0021-9193
Published
1990-05-00
Pages
2250-8
Language
English
Region
United States
NLM ID
2985120R
PMCID
PMC208856
Subset
IM
Databases
GENBANK
M57676
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