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PMID: 20617813 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

Lessons from free energy simulations of delta-opioid receptor homodimers involving the fourth transmembrane helix.

Biochemistry ·Vol. 49 ·No. 31 ·2010-08-10 ·Pages 6771-6

Provasi D, Johnston JM, Filizola M

Abstract

Several G protein-coupled receptors (GPCRs), including opioid receptors deltaOR, muOR, and kappaOR, have been reported to form stable dimers or oligomers in lipid bilayers and cell membranes. This notion has been recently challenged by imaging data supporting a transient nature of GPCR association. Here we use umbrella sampling reconstructed free energies of deltaOR homodimers involving the fourth transmembrane helix to predict their association constant. The results of these simulations, combined with estimates of diffusion-limited association rates, suggest a short lifetime for deltaOR homodimers in the membrane, in agreement with recent trends.

MeSH Terms
Animals Computer Simulation Diffusion Half-Life Humans Membrane Proteins Protein Multimerization Protein Structure, Secondary Receptors, G-Protein-Coupled Receptors, Opioid, delta/chemistry,metabolism Thermodynamics
Chemicals
Membrane Proteins Receptors, G-Protein-Coupled Receptors, Opioid, delta
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Provasi Davide
Department of Structural and Chemical Biology, Mount Sinai School of Medicine, New York, New York 10029, USA.
Johnston Jennifer M
Filizola Marta
References (40)
40 references, click to expand
  1. Standardizing the free energy change of transmembrane helix-helix interactions.
    J Mol Biol. 2002 Oct 25;323(3):563-71 PMID: 12381309
  2. Functional importance of a structurally distinct homodimeric complex of the family B G protein-coupled secretin receptor.
    Mol Pharmacol. 2009 Aug;76(2):264-74 PMID: 19429716
  3. Opioid receptor homo- and heterodimerization in living cells by quantitative bioluminescence resonance energy transfer.
    Mol Pharmacol. 2005 Jun;67(6):2173-84 PMID: 15778451
  4. Formation and dissociation of M1 muscarinic receptor dimers seen by total internal reflection fluorescence imaging of single molecules.
    Proc Natl Acad Sci U S A. 2010 Feb 9;107(6):2693-8 PMID: 20133736
  5. The fourth transmembrane segment forms the interface of the dopamine D2 receptor homodimer.
    J Biol Chem. 2003 Feb 14;278(7):4385-8 PMID: 12496294
  6. Statistical mechanical equilibrium theory of selective ion channels.
    Biophys J. 1999 Jul;77(1):139-53 PMID: 10388746
  7. Prediction of heterodimerization interfaces of G-protein coupled receptors with a new subtractive correlated mutation method.
    Protein Eng. 2002 Nov;15(11):881-5 PMID: 12538907
  8. High-resolution crystal structure of an engineered human beta2-adrenergic G protein-coupled receptor.
    Science. 2007 Nov 23;318(5854):1258-65 PMID: 17962520
  9. G-protein-coupled receptor heterodimerization modulates receptor function.
    Nature. 1999 Jun 17;399(6737):697-700 PMID: 10385123
  10. Combining an Elastic Network With a Coarse-Grained Molecular Force Field: Structure, Dynamics, and Intermolecular Recognition.
    J Chem Theory Comput. 2009 Sep 8;5(9):2531-43 PMID: 26616630
  11. Comment on "Free energy simulations of single and double ion occupancy in gramicidin A" [J. Chem. Phys. 126, 105103 (2007)].
    J Chem Phys. 2008 Jun 14;128(22):227101; author reply 227102 PMID: 18554067
  12. Dynamics of beta2-adrenergic receptor-ligand complexes on living cells.
    Biochemistry. 2004 May 25;43(20):6190-9 PMID: 15147203
  13. GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation.
    J Chem Theory Comput. 2008 Mar;4(3):435-47 PMID: 26620784
  14. The MARTINI Coarse-Grained Force Field: Extension to Proteins.
    J Chem Theory Comput. 2008 May;4(5):819-34 PMID: 26621095
  15. D2 dopamine receptor homodimerization is mediated by multiple sites of interaction, including an intermolecular interaction involving transmembrane domain 4.
    Biochemistry. 2003 Sep 23;42(37):11023-31 PMID: 12974638
  16. Reconstruction of atomistic details from coarse-grained structures.
    J Comput Chem. 2010 Apr 30;31(6):1333-43 PMID: 20087907
  17. Protein-protein docking with backbone flexibility.
    J Mol Biol. 2007 Oct 19;373(2):503-19 PMID: 17825317
  18. Structural models for dimerization of G-protein coupled receptors: the opioid receptor homodimers.
    Biopolymers. 2002;66(5):317-25 PMID: 12539260
  19. Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol. 1993 Dec 5;234(3):779-815 PMID: 8254673
  20. Crosstalk in G protein-coupled receptors: changes at the transmembrane homodimer interface determine activation.
    Proc Natl Acad Sci U S A. 2005 Nov 29;102(48):17495-500 PMID: 16301531
  21. Two transmembrane Cys residues are involved in 5-HT4 receptor dimerization.
    Biochem Biophys Res Commun. 2007 May 11;356(3):642-7 PMID: 17379184
  22. Ligand sensitivity in dimeric associations of the serotonin 5HT2c receptor.
    EMBO Rep. 2008 Apr;9(4):363-9 PMID: 18344975
  23. Lateral motion of beta receptors in membranes of cultured liver cells.
    Proc Natl Acad Sci U S A. 1982 May;79(9):2907-11 PMID: 6123999
  24. Internal trafficking and surface mobility of a functionally intact beta2-adrenergic receptor-green fluorescent protein conjugate.
    Mol Pharmacol. 1997 Feb;51(2):177-84 PMID: 9203621
  25. GPCRDB information system for G protein-coupled receptors.
    Nucleic Acids Res. 2003 Jan 1;31(1):294-7 PMID: 12520006
  26. Lateral diffusion of rhodopsin in the visual receptor membrane.
    J Supramol Struct. 1973;1(4):354 PMID: 4543718
  27. C5a receptor oligomerization. I. Disulfide trapping reveals oligomers and potential contact surfaces in a G protein-coupled receptor.
    J Biol Chem. 2003 Sep 12;278(37):35345-53 PMID: 12835319
  28. Transmembrane domain IV of the Gallus gallus VT2 vasotocin receptor is essential for forming a heterodimer with the corticotrophin releasing hormone receptor.
    J Biomed Opt. 2008 May-Jun;13(3):031208 PMID: 18601532
  29. The alpha1b-adrenoceptor exists as a higher-order oligomer: effective oligomerization is required for receptor maturation, surface delivery, and function.
    Mol Pharmacol. 2007 Apr;71(4):1015-29 PMID: 17220353
  30. Identification of a serotonin/glutamate receptor complex implicated in psychosis.
    Nature. 2008 Mar 6;452(7183):93-7 PMID: 18297054
  31. Identification of amino acid residues crucial for chemokine receptor dimerization.
    Nat Immunol. 2004 Feb;5(2):216-23 PMID: 14716309
  32. Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers. 1983 Dec;22(12):2577-637 PMID: 6667333
  33. Analysis of receptor oligomerization by FRAP microscopy.
    Nat Methods. 2009 Mar;6(3):225-30 PMID: 19234451
  34. Agonist-selective dynamic compartmentalization of human Mu opioid receptor as revealed by resolutive FRAP analysis.
    J Biol Chem. 2010 May 7;285(19):14514-20 PMID: 20197280
  35. Multiple interactions between transmembrane helices generate the oligomeric alpha1b-adrenoceptor.
    Mol Pharmacol. 2004 Nov;66(5):1123-37 PMID: 15304550
  36. Oligomerization of mu- and delta-opioid receptors. Generation of novel functional properties.
    J Biol Chem. 2000 Aug 25;275(34):26128-35 PMID: 10842167
  37. Setting up and running molecular dynamics simulations of membrane proteins.
    Methods. 2007 Apr;41(4):475-88 PMID: 17367719
  38. Instability of a class a G protein-coupled receptor oligomer interface.
    Mol Pharmacol. 2009 Jun;75(6):1296-9 PMID: 19273553
  39. Energetics of ion conduction through the gramicidin channel.
    Proc Natl Acad Sci U S A. 2004 Jan 6;101(1):117-22 PMID: 14691245
  40. The MARTINI force field: coarse grained model for biomolecular simulations.
    J Phys Chem B. 2007 Jul 12;111(27):7812-24 PMID: 17569554
Article Info
Journal
Biochemistry
Abbr.
Biochemistry
ISSN
1520-4995
Published
2010-08-10
Pages
6771-6
Language
English
Region
United States
NLM ID
0370623
PMCID
PMC2914489
Subset
IM
Grants
NIDA NIH HHS · R01 DA020032 · United States
NIDA NIH HHS · DA020032 · United States
NIDA NIH HHS · DA026434 · United States
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