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PMID: 20118937 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Nonsense-mediated mRNA decapping occurs on polyribosomes in Saccharomyces cerevisiae.

Nature structural & molecular biology ·Vol. 17 ·No. 2 ·2010-02-00 ·Pages 244-7

Hu W, Petzold C, Coller J, Baker KE

Abstract

Nonsense-mediated decay (NMD) degrades mRNA containing premature translation termination codons. In yeast, NMD substrates are decapped and digested exonucleolytically from the 5' end. Despite the requirement for translation in recognition, degradation of nonsense-containing mRNA is considered to occur in ribosome-free cytoplasmic P bodies. We show decapped nonsense-containing mRNA associate with polyribosomes, indicating that recognition and degradation are tightly coupled and that polyribosomes are major sites for degradation of aberrant mRNAs.

MeSH Terms
Codon, Nonsense Endoribonucleases/metabolism Polyribosomes/metabolism RNA Stability RNA, Messenger/metabolism Saccharomyces cerevisiae/metabolism
Chemicals
Codon, Nonsense RNA, Messenger mRNA decapping enzymes Endoribonucleases
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Hu Wenqian
Center for RNA Molecular Biology, Case Western Reserve University, Cleveland, Ohio, USA.
Petzold Christine
Coller Jeff
Baker Kristian E
References (20)
20 references, click to expand
  1. General translational repression by activators of mRNA decapping.
    Cell. 2005 Sep 23;122(6):875-86 PMID: 16179257
  2. Edc3p and a glutamine/asparagine-rich domain of Lsm4p function in processing body assembly in Saccharomyces cerevisiae.
    J Cell Biol. 2007 Nov 5;179(3):437-49 PMID: 17984320
  3. Linking mRNA turnover and translation: assessing the polyribosomal association of mRNA decay factors and degradative intermediates.
    Methods. 1999 Jan;17(1):28-37 PMID: 10075880
  4. Identification of Edc3p as an enhancer of mRNA decapping in Saccharomyces cerevisiae.
    Genetics. 2004 Feb;166(2):729-39 PMID: 15020463
  5. Targeting of aberrant mRNAs to cytoplasmic processing bodies.
    Cell. 2006 Jun 16;125(6):1095-109 PMID: 16777600
  6. Quality control of eukaryotic mRNA: safeguarding cells from abnormal mRNA function.
    Genes Dev. 2007 Aug 1;21(15):1833-56 PMID: 17671086
  7. Relationship between yeast polyribosomes and Upf proteins required for nonsense mRNA decay.
    J Biol Chem. 1997 Aug 29;272(35):22163-72 PMID: 9268361
  8. Early nonsense: mRNA decay solves a translational problem.
    Nat Rev Mol Cell Biol. 2006 Jun;7(6):415-25 PMID: 16723977
  9. Processing bodies are not required for mammalian nonsense-mediated mRNA decay.
    RNA. 2009 Jul;15(7):1265-73 PMID: 19474145
  10. Nonsense-mediated mRNA decay in mammalian cells involves decapping, deadenylating, and exonucleolytic activities.
    Mol Cell. 2003 Sep;12(3):675-87 PMID: 14527413
  11. Recognition of yeast mRNAs as "nonsense containing" leads to both inhibition of mRNA translation and mRNA degradation: implications for the control of mRNA decapping.
    Mol Biol Cell. 1999 Nov;10(11):3971-8 PMID: 10564284
  12. mRNA quality control: an ancient machinery recognizes and degrades mRNAs with nonsense codons.
    FEBS Lett. 2007 Jun 19;581(15):2845-53 PMID: 17531985
  13. A crucial role for GW182 and the DCP1:DCP2 decapping complex in miRNA-mediated gene silencing.
    RNA. 2005 Nov;11(11):1640-7 PMID: 16177138
  14. SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells.
    Nat Struct Mol Biol. 2009 Jan;16(1):49-55 PMID: 19060897
  15. Premature translational termination triggers mRNA decapping.
    Nature. 1994 Aug 18;370(6490):578-81 PMID: 8052314
  16. Nonsense-mediated mRNA decay: terminating erroneous gene expression.
    Curr Opin Cell Biol. 2004 Jun;16(3):293-9 PMID: 15145354
  17. Co-translational mRNA decay in Saccharomyces cerevisiae.
    Nature. 2009 Sep 10;461(7261):225-9 PMID: 19701183
  18. One-step affinity purification of the yeast ribosome and its associated proteins and mRNAs.
    RNA. 2002 Jul;8(7):948-58 PMID: 12166649
  19. Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.
    Cell. 2008 Apr 18;133(2):314-27 PMID: 18423202
  20. The hDcp2 protein is a mammalian mRNA decapping enzyme.
    Proc Natl Acad Sci U S A. 2002 Oct 1;99(20):12663-8 PMID: 12218187
Article Info
Journal
Nature structural & molecular biology
Abbr.
Nat Struct Mol Biol
ISSN
1545-9985
Published
2010-02-00
Epub
2010-00-31
Pages
244-7
Language
English
Region
United States
NLM ID
101186374
PMCID
PMC2840703
Subset
IM
Grants
NIGMS NIH HHS · R01 GM080465 · United States
NIGMS NIH HHS · R01 GM080465-02 · United States
NIGMS NIH HHS · GM080465 · United States
NIGMS NIH HHS · R01 GM080465-01 · United States
NIGMS NIH HHS · R01 GM080465-04 · United States
NIGMS NIH HHS · R01 GM080465-03 · United States
NIGMS NIH HHS · R01 GM080465-03S1 · United States
NIGMS NIH HHS · R01 GM080465-05 · United States
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