Home LiteratureArticle Details
PMID: 19903557 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

Chapter 11 - Reconstitution of membrane proteins in phospholipid bilayer nanodiscs.

Methods in enzymology ·Vol. 464 ·2009-00-00 ·Pages 211-31

Ritchie TK, Grinkova YV, Bayburt TH, Denisov IG, Zolnerciks JK, Atkins WM, Sligar SG

Abstract

Self-assembled phospholipid bilayer Nanodiscs have become an important and versatile tool among model membrane systems to functionally reconstitute membrane proteins. Nanodiscs consist of lipid domains encased within an engineered derivative of apolipoprotein A-1 scaffold proteins, which can be tailored to yield homogeneous preparations of disks with different diameters, and with epitope tags for exploitation in various purification strategies. A critical aspect of the self-assembly of target membranes into Nanodiscs lies in the optimization of the lipid:protein ratio. Here we describe strategies for performing this optimization and provide examples for reconstituting bacteriorhodopsin as a trimer, rhodopsin, and functionally active P-glycoprotein. Together, these demonstrate the versatility of Nanodisc technology for preparing monodisperse samples of membrane proteins of wide-ranging structure.

MeSH Terms
ATP Binding Cassette Transporter, Subfamily B, Member 1/chemistry Animals Bacteriorhodopsins/chemistry Crystallography, X-Ray Lipid Bilayers/chemistry Membrane Proteins/chemistry Mice Models, Biological Nanostructures/chemistry Phosphatidylcholines/chemistry Phospholipids/chemistry
Chemicals
ATP Binding Cassette Transporter, Subfamily B, Member 1 Lipid Bilayers Membrane Proteins Phosphatidylcholines Phospholipids Bacteriorhodopsins 1-palmitoyl-2-oleoylphosphatidylcholine
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Ritchie T K
Department of Medicinal Chemistry, University of Washington, Seattle, Washington, USA.
Grinkova Y V
Bayburt T H
Denisov I G
Zolnerciks J K
Atkins W M
Sligar S G
References (63)
63 references, click to expand
  1. Applications of phospholipid bilayer nanodiscs in the study of membranes and membrane proteins.
    Biochemistry. 2007 Feb 27;46(8):2059-69 PMID: 17263563
  2. Drug transport by reconstituted P-glycoprotein in proteoliposomes. Effect of substrates and modulators, and dependence on bilayer phase state.
    Eur J Biochem. 2001 Mar;268(6):1687-97 PMID: 11248688
  3. Structure of the multidrug resistance P-glycoprotein.
    Semin Cancer Biol. 1997 Jun;8(3):135-42 PMID: 9441943
  4. Single-molecule height measurements on microsomal cytochrome P450 in nanometer-scale phospholipid bilayer disks.
    Proc Natl Acad Sci U S A. 2002 May 14;99(10):6725-30 PMID: 11997441
  5. Direct solubilization of heterologously expressed membrane proteins by incorporation into nanoscale lipid bilayers.
    Biotechniques. 2003 Sep;35(3):556-60, 562-3 PMID: 14513561
  6. Intrinsic fluorescence of the P-glycoprotein multidrug transporter: sensitivity of tryptophan residues to binding of drugs and nucleotides.
    Biochemistry. 2000 Dec 5;39(48):14927-38 PMID: 11101309
  7. Preparation of retinal rod outer segments.
    Methods Enzymol. 1982;81:48-52 PMID: 6212746
  8. Finding a single-molecule solution for membrane proteins.
    Biochem Biophys Res Commun. 2003 Dec 5;312(1):115-9 PMID: 14630028
  9. Allosteric effects on substrate dissociation from cytochrome P450 3A4 in nanodiscs observed by ensemble and single-molecule fluorescence spectroscopy.
    J Am Chem Soc. 2008 Nov 26;130(47):15746-7 PMID: 18980315
  10. The ferrous-dioxygen intermediate in human cytochrome P450 3A4. Substrate dependence of formation and decay kinetics.
    J Biol Chem. 2006 Aug 18;281(33):23313-8 PMID: 16762915
  11. Magic-angle spinning solid-state NMR spectroscopy of nanodisc-embedded human CYP3A4.
    Biochemistry. 2007 Dec 4;46(48):13696-703 PMID: 17985934
  12. Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane.
    Methods Enzymol. 1974;31:667-78 PMID: 4418026
  13. Do drug substrates enter the common drug-binding pocket of P-glycoprotein through "gates"?
    Biochem Biophys Res Commun. 2005 Apr 8;329(2):419-22 PMID: 15737603
  14. Structure, function and regulation of P-glycoprotein and its clinical relevance in drug disposition.
    Xenobiotica. 2008 Jul;38(7-8):802-32 PMID: 18668431
  15. Structural insights into P-glycoprotein (ABCB1) by small angle X-ray scattering and electron crystallography.
    FEBS Lett. 2008 Aug 20;582(19):2950-6 PMID: 18657537
  16. A method for the determination of inorganic phosphate in the presence of labile organic phosphate and high concentrations of protein: application to lens ATPases.
    Anal Biochem. 1988 Jan;168(1):1-4 PMID: 2834977
  17. Rational use of in vitro P-glycoprotein assays in drug discovery.
    J Pharmacol Exp Ther. 2001 Nov;299(2):620-8 PMID: 11602674
  18. The one-electron autoxidation of human cytochrome P450 3A4.
    J Biol Chem. 2007 Sep 14;282(37):26865-26873 PMID: 17650504
  19. Solubilization of functional membrane proteins.
    Methods Enzymol. 1984;104:305-18 PMID: 6232441
  20. Formation and properties of bacteriorhodopsin monomers in the non-ionic detergents octyl-beta-D-glucoside and Triton X-100.
    FEBS Lett. 1978 Dec 15;96(2):322-6 PMID: 32075
  21. Structural analysis of nanoscale self-assembled discoidal lipid bilayers by solid-state NMR spectroscopy.
    Biophys J. 2006 Nov 15;91(10):3819-28 PMID: 16905610
  22. Fluorescent probes for rapid screening of potential drug-drug interactions at the CYP3A4 level.
    ChemMedChem. 2007 May;2(5):717-24 PMID: 17357170
  23. The stabilisation of purified, reconstituted P-glycoprotein by freeze drying with disaccharides.
    Cryobiology. 2009 Feb;58(1):37-44 PMID: 18983838
  24. Evidence for a Sav1866-like architecture for the human multidrug transporter P-glycoprotein.
    FASEB J. 2007 Dec;21(14):3937-48 PMID: 17627029
  25. The conserved tyrosine residues 401 and 1044 in ATP sites of human P-glycoprotein are critical for ATP binding and hydrolysis: evidence for a conserved subdomain, the A-loop in the ATP-binding cassette.
    Biochemistry. 2006 Jun 20;45(24):7605-16 PMID: 16768456
  26. The local phospholipid environment modulates the activation of blood clotting.
    J Biol Chem. 2007 Mar 2;282(9):6556-63 PMID: 17200119
  27. Functional reconstitution of Beta2-adrenergic receptors utilizing self-assembling Nanodisc technology.
    Biotechniques. 2006 May;40(5):601-2, 604, 606, passim PMID: 16708760
  28. Functional assays of membrane-bound proteins with SAMDI-TOF mass spectrometry.
    Angew Chem Int Ed Engl. 2007;46(46):8796-8 PMID: 17943935
  29. Nanodiscs separate chemoreceptor oligomeric states and reveal their signaling properties.
    Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11509-14 PMID: 16864771
  30. Using Nanodiscs to create water-soluble transmembrane chemoreceptors inserted in lipid bilayers.
    Methods Enzymol. 2007;423:317-35 PMID: 17609138
  31. Modulation of drug-stimulated ATPase activity of human MDR1/P-glycoprotein by cholesterol.
    Biochem J. 2007 Jan 15;401(2):597-605 PMID: 17029589
  32. Directed self-assembly of monodisperse phospholipid bilayer Nanodiscs with controlled size.
    J Am Chem Soc. 2004 Mar 24;126(11):3477-87 PMID: 15025475
  33. Membrane proteins: functional and structural studies using reconstituted proteoliposomes and 2-D crystals.
    Braz J Med Biol Res. 2002 Jul;35(7):753-66 PMID: 12131914
  34. Co-incorporation of heterologously expressed Arabidopsis cytochrome P450 and P450 reductase into soluble nanoscale lipid bilayers.
    Arch Biochem Biophys. 2004 Apr 15;424(2):141-53 PMID: 15047186
  35. Nanodiscs for immobilization of lipid bilayers and membrane receptors: kinetic analysis of cholera toxin binding to a glycolipid receptor.
    Anal Chem. 2008 Aug 15;80(16):6245-52 PMID: 18616345
  36. Multiple molecular mechanisms for multidrug resistance transporters.
    Nature. 2007 Apr 12;446(7137):749-57 PMID: 17429392
  37. Assembly of single bacteriorhodopsin trimers in bilayer nanodiscs.
    Arch Biochem Biophys. 2006 Jun 15;450(2):215-22 PMID: 16620766
  38. The ferrous-oxy complex of human aromatase.
    Biochem Biophys Res Commun. 2008 Jul 25;372(2):379-82 PMID: 18482580
  39. Interaction with P-glycoprotein and transport of erythromycin, midazolam and ketoconazole in Caco-2 cells.
    Eur J Pharmacol. 1998 Oct 9;358(3):289-94 PMID: 9822896
  40. Structure of P-glycoprotein reveals a molecular basis for poly-specific drug binding.
    Science. 2009 Mar 27;323(5922):1718-22 PMID: 19325113
  41. Self-assembly of single integral membrane proteins into soluble nanoscale phospholipid bilayers.
    Protein Sci. 2003 Nov;12(11):2476-81 PMID: 14573860
  42. Structure, binding, and activity of Syd, a SecY-interacting protein.
    J Biol Chem. 2009 Mar 20;284(12):7897-902 PMID: 19139097
  43. P-glycoprotein and 'lipid rafts': some ambiguous mutual relationships (floating on them, building them or meeting them by chance?).
    Cell Mol Life Sci. 2006 May;63(9):1038-59 PMID: 16721513
  44. Ligand binding to cytochrome P450 3A4 in phospholipid bilayer nanodiscs: the effect of model membranes.
    J Biol Chem. 2007 Sep 28;282(39):28309-28320 PMID: 17573349
  45. Blood clotting reactions on nanoscale phospholipid bilayers.
    Thromb Res. 2008;122 Suppl 1:S23-6 PMID: 18691494
  46. Stoichiometry and affinity of nucleotide binding to P-glycoprotein during the catalytic cycle.
    Biochemistry. 2003 Feb 4;42(4):1170-7 PMID: 12549939
  47. Microfluidic patterning of nanodisc lipid bilayers and multiplexed analysis of protein interaction.
    Lab Chip. 2008 Oct;8(10):1723-8 PMID: 18813396
  48. Kinetic properties of recombinant MAO-A on incorporation into phospholipid nanodisks.
    J Neural Transm (Vienna). 2007;114(6):699-702 PMID: 17393065
  49. Functional and structural stability of the epidermal growth factor receptor in detergent micelles and phospholipid nanodiscs.
    Biochemistry. 2008 Sep 30;47(39):10314-23 PMID: 18771282
  50. Transducin activation by nanoscale lipid bilayers containing one and two rhodopsins.
    J Biol Chem. 2007 May 18;282(20):14875-81 PMID: 17395586
  51. Drug binding in human P-glycoprotein causes conformational changes in both nucleotide-binding domains.
    J Biol Chem. 2003 Jan 17;278(3):1575-8 PMID: 12421806
  52. Comparative studies on in vitro methods for evaluating in vivo function of MDR1 P-glycoprotein.
    Pharm Res. 2001 Dec;18(12):1660-8 PMID: 11785684
  53. Nanodiscs unravel the interaction between the SecYEG channel and its cytosolic partner SecA.
    EMBO J. 2007 Apr 18;26(8):1995-2004 PMID: 17396152
  54. Redox potential control by drug binding to cytochrome P450 3A4.
    J Am Chem Soc. 2007 Nov 14;129(45):13778-9 PMID: 17948999
  55. Homotropic cooperativity of monomeric cytochrome P450 3A4 in a nanoscale native bilayer environment.
    Arch Biochem Biophys. 2004 Oct 15;430(2):218-28 PMID: 15369821
  56. Reconstitution of purified P-glycoprotein into liposomes.
    J Cancer Res Clin Oncol. 1995;121(9-10):582-6 PMID: 7559741
  57. The functional purification of P-glycoprotein is dependent on maintenance of a lipid-protein interface.
    Biochim Biophys Acta. 1997 Sep 4;1328(2):109-24 PMID: 9315609
  58. Screening of type I and II drug binding to human cytochrome P450-3A4 in nanodiscs by localized surface plasmon resonance spectroscopy.
    Anal Chem. 2009 May 15;81(10):3754-9 PMID: 19364136
  59. P-glycoprotein in proteoliposomes with low residual detergent: the effects of cholesterol.
    Pharm Res. 2007 Nov;24(11):1993-2004 PMID: 17497080
  60. Three-dimensional structure of P-glycoprotein: the transmembrane regions adopt an asymmetric configuration in the nucleotide-bound state.
    J Biol Chem. 2005 Jan 28;280(4):2857-62 PMID: 15485807
  61. Detailed characterization of cysteine-less P-glycoprotein reveals subtle pharmacological differences in function from wild-type protein.
    Br J Pharmacol. 2001 Dec;134(8):1609-18 PMID: 11739236
  62. Interaction of common azole antifungals with P glycoprotein.
    Antimicrob Agents Chemother. 2002 Jan;46(1):160-5 PMID: 11751127
  63. Purification and reconstitution of human P-glycoprotein.
    Methods Enzymol. 1998;292:492-504 PMID: 9711577
Article Info
Journal
Methods in enzymology
Abbr.
Methods Enzymol
ISSN
1557-7988
Published
2009-00-00
Pages
211-31
Language
English
Region
United States
NLM ID
0212271
PMCID
PMC4196316
Subset
IM
Grants
NIGMS NIH HHS · GM 32165 · United States
NIGMS NIH HHS · P01 GM032165 · United States
NIGMS NIH HHS · GM 31756 · United States
NIGMS NIH HHS · R01 GM031756 · United States
NIGMS NIH HHS · R37 GM031756 · United States
NIGMS NIH HHS · GM 33775 · United States
NIGMS NIH HHS · R01 GM033775 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com