Home LiteratureArticle Details
PMID: 19732833 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

The structure of eukaryotic and prokaryotic complex I.

Journal of structural biology ·Vol. 169 ·No. 1 ·2010-01-00 ·Pages 81-8

Clason T, Ruiz T, Schägger H, Peng G, Zickermann V, Brandt U, Michel H, Radermacher M

Abstract

The structures of the NADH dehydrogenases from Bos taurus and Aquifex aeolicus have been determined by 3D electron microscopy, and have been analyzed in comparison with the previously determined structure of Complex I from Yarrowia lipolytica. The results show a clearly preserved domain structure in the peripheral arm of complex I, which is similar in the bacterial and eukaryotic complex. The membrane arms of both eukaryotic complexes show a similar shape but also significant differences in distinctive domains. One of the major protuberances observed in Y. lipolytica complex I appears missing in the bovine complex, while a protuberance not found in Y. lipolytica connects in bovine complex I a domain of the peripheral arm to the membrane arm. The structural similarities of the peripheral arm agree with the common functional principle of all complex Is. The differences seen in the membrane arm may indicate differences in the regulatory mechanism of the enzyme in different species.

MeSH Terms
Animals Bacteria/metabolism Cattle Electron Transport Complex I/chemistry,metabolism,ultrastructure Eukaryota Microscopy, Electron Models, Molecular NADH Dehydrogenase/chemistry,metabolism,ultrastructure Protein Structure, Tertiary Yarrowia/metabolism
Chemicals
NADH Dehydrogenase Electron Transport Complex I
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Clason T
University of Vermont, College of Medicine, Department of Molecular Physiology and Biophysics, Burlington, VT 05405, USA.
Ruiz T
Schägger H
Peng G
Zickermann V
Brandt U
Michel H
Radermacher M
References (41)
41 references, click to expand
  1. The proton-translocating NADH-quinone oxidoreductase in the respiratory chain: the secret unlocked.
    Biochemistry. 2003 Mar 4;42(8):2266-74 PMID: 12600193
  2. Energy converting NADH:quinone oxidoreductase (complex I).
    Annu Rev Biochem. 2006;75:69-92 PMID: 16756485
  3. Catalytic properties of the mitochondrial NADH-ubiquinone oxidoreductase (complex I) and the pseudo-reversible active/inactive enzyme transition.
    Biochim Biophys Acta. 1998 May 6;1364(2):169-85 PMID: 9593879
  4. Use of multivariate statistics in analysing the images of biological macromolecules.
    Ultramicroscopy. 1981;6(2):187-94 PMID: 7268930
  5. The mechanism of proton and electron transport in mitochondrial complex I.
    Biochim Biophys Acta. 1994 Aug 30;1187(2):116-20 PMID: 8075103
  6. Xmipp: An Image Processing Package for Electron Microscopy
    J Struct Biol. 1996 Oct;116(1):237-40 PMID: 8812978
  7. Proton pumping by NADH:ubiquinone oxidoreductase. A redox driven conformational change mechanism?
    FEBS Lett. 2003 Jun 12;545(1):9-17 PMID: 12788486
  8. Three-dimensional reconstruction from random projections: orientational alignment via Radon transforms.
    Ultramicroscopy. 1994 Feb;53(2):121-36 PMID: 8171751
  9. The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles.
    J Struct Biol. 2006 Mar;153(3):284-99 PMID: 16431136
  10. Negatively stained 50 S ribosomal subunits of Escherichia coli.
    J Mol Biol. 1986 Nov 20;192(2):291-322 PMID: 3550100
  11. The gross structure of the respiratory complex I: a Lego System.
    Biochim Biophys Acta. 2004 Jan 30;1608(1):1-9 PMID: 14741580
  12. The three-dimensional structure of complex I from Yarrowia lipolytica: a highly dynamic enzyme.
    J Struct Biol. 2006 Jun;154(3):269-79 PMID: 16621601
  13. Proton-translocation by membrane-bound NADH:ubiquinone-oxidoreductase (complex I) through redox-gated ligand conduction.
    Biochim Biophys Acta. 1997 Jan 16;1318(1-2):79-91 PMID: 9030257
  14. Direct localization of the 51 and 24 kDa subunits of mitochondrial complex I by three-dimensional difference imaging.
    J Struct Biol. 2007 Sep;159(3):433-42 PMID: 17591445
  15. Three-dimensional reconstruction and averaging of 30 S ribosomal subunits of Escherichia coli from electron micrographs.
    J Mol Biol. 1983 Jan 25;163(3):409-30 PMID: 6339729
  16. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.
    J Mol Biol. 2003 Oct 31;333(4):721-45 PMID: 14568533
  17. The correlation averaging of a regularly arranged bacterial cell envelope protein.
    J Microsc. 1982 Aug;127(Pt 2):127-38 PMID: 7120365
  18. The first three-dimensional structure of phosphofructokinase from Saccharomyces cerevisiae determined by electron microscopy of single particles.
    J Struct Biol. 2001 Dec;136(3):167-80 PMID: 12051897
  19. Isolation, characterization and electron microscopic single particle analysis of the NADH:ubiquinone oxidoreductase (complex I) from the hyperthermophilic eubacterium Aquifex aeolicus.
    Biochemistry. 2003 Mar 18;42(10):3032-9 PMID: 12627969
  20. Three-dimensional reconstruction of single particles from random and nonrandom tilt series.
    J Electron Microsc Tech. 1988 Aug;9(4):359-94 PMID: 3058896
  21. Identification of the mitochondrial ND3 subunit as a structural component involved in the active/deactive enzyme transition of respiratory complex I.
    J Biol Chem. 2008 Jul 25;283(30):20907-13 PMID: 18502755
  22. A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli.
    J Microsc. 1986 Jan;141(Pt 1):RP1-2 PMID: 3514918
  23. Three-dimensional structure of bovine NADH:ubiquinone oxidoreductase (complex I) at 22 A in ice.
    J Mol Biol. 1998 Apr 17;277(5):1033-46 PMID: 9571020
  24. Complex I: a chimaera of a redox and conformation-driven proton pump?
    J Bioenerg Biomembr. 2001 Jun;33(3):169-77 PMID: 11695826
  25. Three-dimensional reconstruction and averaging of 50 S ribosomal subunits of Escherichia coli from electron micrographs.
    J Mol Biol. 1983 Jan 25;163(3):431-50 PMID: 6339730
  26. A Bayesian method for classification of images from electron micrographs.
    J Struct Biol. 2002 Jun;138(3):157-70 PMID: 12217655
  27. A novel, enzymatically active conformation of the Escherichia coli NADH:ubiquinone oxidoreductase (complex I).
    J Biol Chem. 2002 May 17;277(20):17970-7 PMID: 11880370
  28. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.
    J Struct Biol. 1996 Jan-Feb;116(1):190-9 PMID: 8742743
  29. Active/de-active transition of respiratory complex I in bacteria, fungi, and animals.
    Biochim Biophys Acta. 2003 Sep 30;1606(1-3):95-103 PMID: 14507430
  30. Slow active/inactive transition of the mitochondrial NADH-ubiquinone reductase.
    Biochim Biophys Acta. 1990 Aug 30;1019(2):151-8 PMID: 2119805
  31. Three-dimensional structure of NADH-dehydrogenase from Neurospora crassa by electron microscopy and conical tilt reconstruction.
    J Mol Biol. 1997 Jan 31;265(4):409-18 PMID: 9034360
  32. The structure of the V(1)-ATPase determined by three-dimensional electron microscopy of single particles.
    J Struct Biol. 2001 Jul;135(1):26-37 PMID: 11562163
  33. HYDROGEN TRANSFER BETWEEN REDUCED DIPHOSPHOPYRIDINE NUCLEOTIDE DEHYDROGENASE AND THE RESPIRATORY CHAIN. II. AN INITIAL LAG IN THE OXIDATION OF REDUCED DIPHOSPHOPYRIDINE NUCLEOTIDE.
    J Biol Chem. 1964 Jun;239:2049-54 PMID: 14213396
  34. Organization of iron-sulfur clusters in respiratory complex I.
    Science. 2005 Jul 29;309(5735):771-4 PMID: 16051796
  35. Structure-function relationships of the yeast fatty acid synthase: negative-stain, cryo-electron microscopy, and image analysis studies of the end views of the structure.
    Proc Natl Acad Sci U S A. 1992 Jul 15;89(14):6585-9 PMID: 1631160
  36. Correspondence analysis of aligned images of biological particles.
    J Mol Biol. 1982 Oct 15;161(1):134-7 PMID: 7154073
  37. Subunit mass fingerprinting of mitochondrial complex I.
    Biochim Biophys Acta. 2008 Oct;1777(10):1384-91 PMID: 18762163
  38. Consistent structure between bacterial and mitochondrial NADH:ubiquinone oxidoreductase (complex I).
    J Mol Biol. 1998 Feb 13;276(1):105-12 PMID: 9514725
  39. HYDROGEN TRANSFER BETWEEN REDUCED DIPHOSPHOPYRIDINE NUCLEOTIDE DEHYDROGENASE AND THE RESPIRATORY CHAIN. I. EFFECT OF SULFHYDRYL INHIBITORS AND PHOSPHOLIPASE.
    J Biol Chem. 1964 Jun;239:2042-8 PMID: 14213395
  40. Conformation-driven and semiquinone-gated proton-pump mechanism in the NADH-ubiquinone oxidoreductase (complex I).
    FEBS Lett. 2005 Aug 29;579(21):4555-61 PMID: 16098512
  41. Structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus.
    Science. 2006 Mar 10;311(5766):1430-6 PMID: 16469879
Article Info
Journal
Journal of structural biology
Abbr.
J Struct Biol
ISSN
1095-8657
Published
2010-01-00
Epub
2009-00-02
Pages
81-8
Language
English
Region
United States
NLM ID
9011206
PMCID
PMC3144259
Subset
IM
Grants
NIGMS NIH HHS · R01 GM068650 · United States
NIGMS NIH HHS · R01 GM069551-05 · United States
NIGMS NIH HHS · R01 GM069551 · United States
NIGMS NIH HHS · R01 GM078202-02 · United States
NIGMS NIH HHS · R01 GM068650-04 · United States
NIGMS NIH HHS · R01 GM078202 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com