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PMID: 1944221 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Nucleotide sequence of genes hrdA, hrdC, and hrdD from Streptomyces coelicolor A3(2) having similarity to rpoD genes.

Molecular & general genetics : MGG ·Vol. 229 ·No. 3 ·1991-10-00 ·Pages 334-40

Tanaka K, Shiina T, Takahashi H

Abstract

The complete nucleotide sequences were determined of hrdA, hrdC, and hrdD from Streptomyces coelicolor A3(2). They indicate the presence of a single open reading frame in each gene coding for polypeptides of 396 (43,747 daltons), 339 (38,173 daltons), and 332 amino acid residues (37,190 daltons), respectively. These amino acid sequences revealed extensive similarities with the principal sigma factors of Bacillus subtilis, Escherichia coli, Mxyococcus xanthus, Pseudomonas aeruginosa, and also the katF gene product of E. coli. Besides the highly conserved amino acid residues in the "rpoD box" region, alignment of hrd gene products and the known principal sigma factors and sigma-related factors allowed us to postulate a common basic structure for the principal sigma type factors as distinct from the alternative sigma factors.

MeSH Terms
Amino Acid Sequence Bacterial Proteins/genetics Base Sequence DNA, Bacterial Genes, Bacterial Molecular Sequence Data Restriction Mapping Sequence Alignment Sequence Homology, Nucleic Acid Sigma Factor/genetics Streptomyces/genetics
Chemicals
Bacterial Proteins DNA, Bacterial Sigma Factor hrdA protein, Streptomyces coelicolor hrdC protein, Streptomyces coelicolor hrdD protein, Streptomyces
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Tanaka K
Institute of Applied Microbiology, University of Tokyo, Japan.
Shiina T
Takahashi H
References (21)
21 references, click to expand
  1. The nucleotide sequence of a 16S rRNA gene from Streptomyces coelicolor A3(2)
    Nucleic Acids Res. 1987 Sep 11;15(17):7176 PMID: 3658676
  2. Structure and function of bacterial sigma factors.
    Annu Rev Biochem. 1988;57:839-72 PMID: 3052291
  3. Cloning and DNA sequence of the gene coding for the major sigma factor from Myxococcus xanthus.
    J Bacteriol. 1990 Jan;172(1):80-5 PMID: 2104614
  4. Cloning, disruption, and transcriptional analysis of three RNA polymerase sigma factor genes of Streptomyces coelicolor A3(2).
    J Bacteriol. 1990 Jun;172(6):3367-78 PMID: 2160942
  5. Cloning and physical characterization of katE and katF required for catalase HPII expression in Escherichia coli.
    Gene. 1988 Dec 20;73(2):337-45 PMID: 2977357
  6. RNA polymerase heterogeneity in Streptomyces coelicolor.
    Nature. 1985 Jan 3-9;313(5997):22-7 PMID: 2578216
  7. Multiple principal sigma factor homologs in eubacteria: identification of the "rpoD box".
    Science. 1988 Nov 18;242(4881):1040-2 PMID: 3194753
  8. Cloning and analysis of the gene (rpoDA) for the principal sigma factor of Pseudomonas aeruginosa.
    Biochim Biophys Acta. 1991 May 2;1089(1):113-9 PMID: 1902749
  9. The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences.
    Gene. 1984 Oct;30(1-3):157-66 PMID: 6096212
  10. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  11. Nucleotide sequence of katF of Escherichia coli suggests KatF protein is a novel sigma transcription factor.
    Nucleic Acids Res. 1989 Dec 11;17(23):9979-91 PMID: 2690013
  12. Unidirectional digestion with exonuclease III creates targeted breakpoints for DNA sequencing.
    Gene. 1984 Jun;28(3):351-9 PMID: 6235151
  13. Nucleotide sequence of the heat shock regulatory gene of E. coli suggests its protein product may be a transcription factor.
    Cell. 1984 Aug;38(1):175-82 PMID: 6088062
  14. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors.
    Gene. 1985;33(1):103-19 PMID: 2985470
  15. Nucleotide sequence and expression of a Streptomyces griseosporeus proteinaceous alpha-amylase inhibitor (HaimII) gene.
    J Bacteriol. 1988 Oct;170(10):4451-7 PMID: 3262610
  16. The nucleotide sequence of the cloned rpoD gene for the RNA polymerase sigma subunit from E coli K12.
    Nucleic Acids Res. 1981 Jun 25;9(12):2889-903 PMID: 6269063
  17. Production of single-stranded plasmid DNA.
    Methods Enzymol. 1987;153:3-11 PMID: 3323803
  18. Sigma factors from E. coli, B. subtilis, phage SP01, and phage T4 are homologous proteins.
    Nucleic Acids Res. 1986 Aug 26;14(16):6745-63 PMID: 3092189
  19. A strong sequence homology exists between the major RNA polymerase sigma factors of Bacillus subtilis and Escherichia coli.
    J Biol Chem. 1985 Jun 25;260(12):7178-85 PMID: 2987246
  20. At least three different RNA polymerase holoenzymes direct transcription of the agarase gene (dagA) of Streptomyces coelicolor A3(2).
    Cell. 1988 Feb 26;52(4):599-607 PMID: 3342448
  21. Two functional domains conserved in major and alternate bacterial sigma factors.
    FEBS Lett. 1985 Jul 22;187(1):11-5 PMID: 3926534
Article Info
Journal
Molecular & general genetics : MGG
Abbr.
Mol Gen Genet
ISSN
0026-8925
DOI
10.1007/BF00267453
Published
1991-10-00
Pages
334-40
Language
English
Region
Germany
NLM ID
0125036
Subset
IM
Databases
GENBANK
S55526, S55527, S55528, S55529, S55530, S55531, S55532, S63729, S63744, S63748, X52980, X52981, X52982
External Links
PubMed source DOI: 10.1007/BF00267453
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