Home LiteratureArticle Details
PMID: 18385231 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Characterization of a rhesus monkey calicivirus representing a new genus of Caliciviridae.

Journal of virology ·Vol. 82 ·No. 11 ·2008-06-00 ·Pages 5408-16

Farkas T, Sestak K, Wei C, Jiang X

Abstract

In this study, we report the characterization of a novel calicivirus (CV), the Tulane virus (TV), which was isolated from stool samples of captive juvenile rhesus macaques (Macaca mulatta) of the Tulane National Primate Research Center. The complete genome of TV contains 6,714 nucleotides plus a poly(A) tail and is organized into three open reading frames (ORFs) that encode the nonstructural (NS) polyprotein (ORF1); the capsid protein (ORF2), with an estimated molecular mass of 57.9 kDa; and a possible minor structural protein (ORF3), with an isoelectric point (pI) of 10.0 and a calculated molecular mass of 22.8 kDa. The NS polyprotein revealed all typical CV amino acid motifs, including GXXGXGKT (NTPase), EYXEX (Vpg), GDCG (protease), and GLPSG and YGDD (polymerase). Phylogenetic trees constructed for the NS polyprotein, NTPase, protease, polymerase, and capsid protein sequences consistently placed the TV on a branch rooted with Norovirus, but with distances equal to those between other genera. The TV can be cultured in a monkey kidney cell line (LLC-MK2) with the appearance of typical cytopathic effect. TV exhibits a typical CV morphology, with a diameter of 36 nm, and has a buoyant density of 1.37 g/ml. According to these physicochemical and genetic characteristics, TV represents a new CV genus for which we propose the name "Recovirus" (rhesus enteric CV). Although the pathogenicity of TV in rhesus macaques remains to be elucidated, the likelihood of TV causing intestinal infection and the availability of a tissue culture system make this virus a valuable surrogate for human CVs.

MeSH Terms
Animals Base Sequence Caliciviridae/classification,physiology Caliciviridae Infections/virology Cell Line Chlorocebus aethiops Genome, Viral/genetics Humans Macaca mulatta/genetics,metabolism,virology Molecular Sequence Data Open Reading Frames/genetics Phylogeny Tissue Culture Techniques Viral Proteins/genetics,metabolism
Chemicals
Viral Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Farkas Tibor
Cincinnati Children's Hospital Medical Center, Cincinnati, OH 45229, USA. Tibor.Farkas@cchmc.org
Sestak Karol
Wei Chao
Jiang Xi
References (40)
40 references, click to expand
  1. Genomic characterization of the unclassified bovine enteric virus Newbury agent-1 (Newbury1) endorses a new genus in the family Caliciviridae.
    Virology. 2006 Jun 20;350(1):240-50 PMID: 16574184
  2. Identification and genomic mapping of the ORF3 and VPg proteins in feline calicivirus virions.
    Virology. 2000 Nov 10;277(1):193-203 PMID: 11062050
  3. Replication of Norovirus in cell culture reveals a tropism for dendritic cells and macrophages.
    PLoS Biol. 2004 Dec;2(12):e432 PMID: 15562321
  4. Binding patterns of human norovirus-like particles to buccal and intestinal tissues of gnotobiotic pigs in relation to A/H histo-blood group antigen expression.
    J Virol. 2007 Apr;81(7):3535-44 PMID: 17215284
  5. Experimental infection of Macaca nemestrina with a Toronto Norwalk-like virus of epidemic viral gastroenteritis.
    J Med Virol. 2002 Mar;66(3):400-6 PMID: 11793394
  6. Norovirus classification and proposed strain nomenclature.
    Virology. 2006 Mar 15;346(2):312-23 PMID: 16343580
  7. Norovirus in captive lion cub (Panthera leo).
    Emerg Infect Dis. 2007 Jul;13(7):1071-3 PMID: 18214183
  8. Characterization of an enteropathogenic bovine calicivirus representing a potentially new calicivirus genus.
    J Virol. 2002 Oct;76(20):10089-98 PMID: 12239283
  9. Caliciviruses differ in their functional requirements for eIF4F components.
    J Biol Chem. 2006 Sep 1;281(35):25315-25 PMID: 16835235
  10. Rabbit hemorrhagic disease virus: genome organization and polyprotein processing of a calicivirus studied after transient expression of cDNA constructs.
    Virology. 2000 Oct 25;276(2):349-63 PMID: 11040126
  11. Identification of further proteolytic cleavage sites in the Southampton calicivirus polyprotein by expression of the viral protease in E. coli.
    J Gen Virol. 1999 Feb;80 ( Pt 2):291-296 PMID: 10073687
  12. The bovine Newbury agent-2 is genetically more closely related to human SRSVs than to animal caliciviruses.
    Virology. 1999 Feb 1;254(1):1-5 PMID: 9927568
  13. Persistence of caliciviruses on environmental surfaces and their transfer to food.
    Int J Food Microbiol. 2006 Apr 15;108(1):84-91 PMID: 16473426
  14. Inactivation of caliciviruses.
    Appl Environ Microbiol. 2004 Aug;70(8):4538-43 PMID: 15294783
  15. Sequencing the termini of capped viral RNA by 5'-3' ligation and PCR.
    Biotechniques. 1991 Apr;10(4):484, 486 PMID: 1651093
  16. Prevalence of rotavirus and norovirus antibodies in non-human primates.
    J Med Primatol. 2004 Feb;33(1):30-3 PMID: 15061730
  17. Detection of Norwalk-like virus genes in the caecum contents of pigs.
    Arch Virol. 1998;143(6):1215-21 PMID: 9687878
  18. Molecular characterization of bovine enteric caliciviruses: a distinct third genogroup of noroviruses (Norwalk-like viruses) unlikely to be of risk to humans.
    J Virol. 2003 Feb;77(4):2789-98 PMID: 12552024
  19. Taxonomy of the caliciviruses.
    J Infect Dis. 2000 May;181 Suppl 2:S322-30 PMID: 10804145
  20. Cleavage map and proteolytic processing of the murine norovirus nonstructural polyprotein in infected cells.
    J Virol. 2006 Aug;80(16):7816-31 PMID: 16873239
  21. Norwalk virus open reading frame 3 encodes a minor structural protein.
    J Virol. 2000 Jul;74(14):6581-91 PMID: 10864672
  22. Detection and molecular characterization of cultivable caliciviruses from clinically normal mink and enteric caliciviruses associated with diarrhea in mink.
    Arch Virol. 2001;146(3):479-93 PMID: 11338385
  23. Structural features in eukaryotic mRNAs that modulate the initiation of translation.
    J Biol Chem. 1991 Oct 25;266(30):19867-70 PMID: 1939050
  24. Concentration and detection of caliciviruses from food contact surfaces.
    J Food Prot. 2002 Jun;65(6):999-1004 PMID: 12092735
  25. Design and evaluation of a primer pair that detects both Norwalk- and Sapporo-like caliciviruses by RT-PCR.
    J Virol Methods. 1999 Dec;83(1-2):145-54 PMID: 10598092
  26. Cleavage activity of the sapovirus 3C-like protease in Escherichia coli.
    Arch Virol. 2005 Dec;150(12):2539-48 PMID: 16052286
  27. Serial propagation of porcine enteric calicivirus in a continuous cell line. Effect of medium supplementation with intestinal contents or enzymes.
    Arch Virol. 1991;120(1-2):115-22 PMID: 1929875
  28. Isolation of primate calicivirus Pan paniscus type 1 from a douc langur (Pygathrix nemaeus l.).
    J Wildl Dis. 1985 Oct;21(4):426-8 PMID: 4078979
  29. Genetic diversity among sapoviruses.
    Arch Virol. 2004 Jul;149(7):1309-23 PMID: 15221533
  30. Reverse genetics system for porcine enteric calicivirus, a prototype sapovirus in the Caliciviridae.
    J Virol. 2005 Feb;79(3):1409-16 PMID: 15650167
  31. Molecular characterization of a bovine enteric calicivirus: relationship to the Norwalk-like viruses.
    J Virol. 1999 Jan;73(1):819-25 PMID: 9847396
  32. Experimental infection of chimpanzees with the Norwalk agent of epidemic viral gastroenteritis.
    J Med Virol. 1978;2(2):89-96 PMID: 97364
  33. In vitro proteolytic processing of the MD145 norovirus ORF1 nonstructural polyprotein yields stable precursors and products similar to those detected in calicivirus-infected cells.
    J Virol. 2003 Oct;77(20):10957-74 PMID: 14512545
  34. Detection of viral agents in fecal specimens of monkeys with diarrhea.
    J Med Primatol. 2007 Apr;36(2):101-7 PMID: 17493140
  35. Processing map and essential cleavage sites of the nonstructural polyprotein encoded by ORF1 of the feline calicivirus genome.
    J Virol. 2002 Jul;76(14):7060-72 PMID: 12072506
  36. Pathogenesis of a genogroup II human norovirus in gnotobiotic pigs.
    J Virol. 2006 Nov;80(21):10372-81 PMID: 17041218
  37. Proteolytic processing of sapovirus ORF1 polyprotein.
    J Virol. 2005 Jun;79(12):7283-90 PMID: 15919882
  38. Nucleotide sequence of a region of the feline calicivirus genome which encodes picornavirus-like RNA-dependent RNA polymerase, cysteine protease and 2C polypeptides.
    Virus Res. 1990 Nov;17(3):145-60 PMID: 2077782
  39. Experimental norovirus infections in non-human primates.
    J Med Virol. 2005 Feb;75(2):313-20 PMID: 15602728
  40. Murine norovirus: a model system to study norovirus biology and pathogenesis.
    J Virol. 2006 Jun;80(11):5104-12 PMID: 16698991
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
1098-5514
Published
2008-06-00
Epub
2008-00-02
Pages
5408-16
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC2395209
Subset
IM
Grants
NIAID NIH HHS · R01 AI55649 · United States
NIAID NIH HHS · R01 AI055649 · United States
NICHD NIH HHS · P01 HD013021 · United States
NCRR NIH HHS · P51 RR000164 · United States
NICHD NIH HHS · P01 HD13021 · United States
NIAID NIH HHS · R21 AI54146 · United States
NIAID NIH HHS · R01 AI37093 · United States
NIAID NIH HHS · R01 AI037093 · United States
NCRR NIH HHS · R21 RR024871 · United States
NCRR NIH HHS · P51 RR00164 · United States
NIAID NIH HHS · R21 AI054146 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com