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PMID: 18160413 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Phytohormone abscisic acid control RNA-dependent RNA polymerase 6 gene expression and post-transcriptional gene silencing in rice cells.

Nucleic acids research ·Vol. 36 ·No. 4 ·2008-03-00 ·Pages 1220-6

Yang JH, Seo HH, Han SJ, Yoon EK, Yang MS, Lee WS

Abstract

RNA-dependent RNA polymerase 6 (RDR6) catalyses dsRNA synthesis for post-transcriptional gene silencing (PTGS)-associated amplification and the generation of endogeneous siRNAs involved in developmental determinations or stress responses. The functional importance of RDR6 in PTGS led us to examine its connection to the cellular regulatory network by analyzing the hormonal responses of RDR6 gene expression in a cultured cell system. Delivery of dsRNA, prepared in vitro, into cultured rice (Oryza sativa cv. Japonica Dongjin) cells successfully silenced the target isocitrate lyase (ICL) transcripts. Silencing was transient in the absence of abscisic acid (ABA), while it became persistent in the presence of ABA in growth medium. A transcription assay of the OsRDR6 promoter showed that it was positively regulated by ABA. OsRDR6-dependent siRNA(ICL) generation was also significantly up-regulated by ABA. The results showed that, among the five rice OsRDR isogenes, only OsRDR6 was responsible for the observed ABA-mediated amplification and silencing of ICL transcripts. We propose that ABA modulates PTGS through the transcriptional control of the OsRDR6 gene.

MeSH Terms
Abscisic Acid/pharmacology Gene Expression Regulation, Plant Isocitrate Lyase/biosynthesis,genetics Oryza/drug effects,enzymology,genetics Plant Growth Regulators/pharmacology Plant Proteins/biosynthesis,genetics RNA Interference RNA-Dependent RNA Polymerase/biosynthesis,genetics
Chemicals
Plant Growth Regulators Plant Proteins Abscisic Acid RNA-Dependent RNA Polymerase Isocitrate Lyase
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Yang Ji Hyun
The Basic Science Research Institute, Department of Biological Science, Sungkyunkwan University, Suwon 440-746, Korea.
Seo Hyun Hee
Han So Jung
Yoon Eun Kyung
Yang Moon Sik
Lee Woo Sung
References (34)
34 references, click to expand
  1. MicroRNA genes are transcribed by RNA polymerase II.
    EMBO J. 2004 Oct 13;23(20):4051-60 PMID: 15372072
  2. Nomenclature and functions of RNA-directed RNA polymerases.
    Trends Plant Sci. 2006 Mar;11(3):142-51 PMID: 16473542
  3. Trans-acting siRNA-mediated repression of ETTIN and ARF4 regulates heteroblasty in Arabidopsis.
    Development. 2006 Aug;133(15):2973-81 PMID: 16818444
  4. Spreading of RNA targeting and DNA methylation in RNA silencing requires transcription of the target gene and a putative RNA-dependent RNA polymerase.
    Plant Cell. 2002 Apr;14(4):857-67 PMID: 11971140
  5. SGS3 and SGS2/SDE1/RDR6 are required for juvenile development and the production of trans-acting siRNAs in Arabidopsis.
    Genes Dev. 2004 Oct 1;18(19):2368-79 PMID: 15466488
  6. Cationic oligopeptide-mediated delivery of dsRNA for post-transcriptional gene silencing in plant cells.
    FEBS Lett. 2004 May 21;566(1-3):307-10 PMID: 15147914
  7. Transitivity-dependent and -independent cell-to-cell movement of RNA silencing.
    EMBO J. 2003 Sep 1;22(17):4523-33 PMID: 12941703
  8. Endogenous siRNAs derived from a pair of natural cis-antisense transcripts regulate salt tolerance in Arabidopsis.
    Cell. 2005 Dec 29;123(7):1279-91 PMID: 16377568
  9. The RNA-dependent RNA polymerase, QDE-1, is a rate-limiting factor in post-transcriptional gene silencing in Neurospora crassa.
    Nucleic Acids Res. 2004;32(7):2123-8 PMID: 15090622
  10. The RNA-binding protein FCA is an abscisic acid receptor.
    Nature. 2006 Jan 19;439(7074):290-4 PMID: 16421562
  11. A biochemical framework for RNA silencing in plants.
    Genes Dev. 2003 Jan 1;17(1):49-63 PMID: 12514099
  12. In vivo protein transduction: delivery of a biologically active protein into the mouse.
    Science. 1999 Sep 3;285(5433):1569-72 PMID: 10477521
  13. A branched pathway for transgene-induced RNA silencing in plants.
    Curr Biol. 2002 Apr 16;12(8):684-8 PMID: 11967158
  14. Genetic and functional diversification of small RNA pathways in plants.
    PLoS Biol. 2004 May;2(5):E104 PMID: 15024409
  15. On the role of RNA amplification in dsRNA-triggered gene silencing.
    Cell. 2001 Nov 16;107(4):465-76 PMID: 11719187
  16. A database analysis method identifies an endogenous trans-acting short-interfering RNA that targets the Arabidopsis ARF2, ARF3, and ARF4 genes.
    Proc Natl Acad Sci U S A. 2005 Jul 5;102(27):9703-8 PMID: 15980147
  17. Cellular RNA-dependent RNA polymerase involved in posttranscriptional gene silencing has two distinct activity modes.
    Mol Cell. 2002 Dec;10(6):1417-27 PMID: 12504016
  18. Regulation of AUXIN RESPONSE FACTOR3 by TAS3 ta-siRNA affects developmental timing and patterning in Arabidopsis.
    Curr Biol. 2006 May 9;16(9):939-44 PMID: 16682356
  19. RNA-directed RNA polymerase 1 (RdR1) mediates the resistance of Nicotiana attenuata to herbivore attack in nature.
    Plant J. 2007 Apr;50(1):40-53 PMID: 17346266
  20. Diauxic Growth in Rice Suspension Cells Grown on Mixed Carbon Sources of Acetate and Glucose.
    Plant Physiol. 1996 Feb;110(2):465-470 PMID: 12226198
  21. Improperly terminated, unpolyadenylated mRNA of sense transgenes is targeted by RDR6-mediated RNA silencing in Arabidopsis.
    Plant Cell. 2007 Mar;19(3):943-58 PMID: 17384170
  22. Endogenous trans-acting siRNAs regulate the accumulation of Arabidopsis mRNAs.
    Mol Cell. 2004 Oct 8;16(1):69-79 PMID: 15469823
  23. Partially redundant functions of Arabidopsis DICER-like enzymes and a role for DCL4 in producing trans-acting siRNAs.
    Curr Biol. 2005 Aug 23;15(16):1494-500 PMID: 16040244
  24. DICER-LIKE1: blind men and elephants in Arabidopsis development.
    Trends Plant Sci. 2002 Nov;7(11):487-91 PMID: 12417148
  25. microRNA-directed phasing during trans-acting siRNA biogenesis in plants.
    Cell. 2005 Apr 22;121(2):207-21 PMID: 15851028
  26. RNA silencing genes control de novo DNA methylation.
    Science. 2004 Feb 27;303(5662):1336 PMID: 14988555
  27. Spreading of post-transcriptional gene silencing along the target gene promotes systemic silencing.
    Plant J. 2004 May;38(4):594-602 PMID: 15125766
  28. Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.
    Proc Natl Acad Sci U S A. 2005 Aug 16;102(33):11928-33 PMID: 16081530
  29. Evidence implying only unprimed RdRP activity during transitive gene silencing in plants.
    Plant Mol Biol. 2005 Jul;58(4):575-83 PMID: 16021340
  30. A mutation in the Arabidopsis HYL1 gene encoding a dsRNA binding protein affects responses to abscisic acid, auxin, and cytokinin.
    Plant Cell. 2000 Dec;12(12):2351-2366 PMID: 11148283
  31. Control of translation and mRNA degradation by miRNAs and siRNAs.
    Genes Dev. 2006 Mar 1;20(5):515-24 PMID: 16510870
  32. DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 2005 Sep 6;102(36):12984-9 PMID: 16129836
  33. A two-hit trigger for siRNA biogenesis in plants.
    Cell. 2006 Nov 3;127(3):565-77 PMID: 17081978
  34. Impacts of altered RNA metabolism on abscisic acid signaling.
    Curr Opin Plant Biol. 2003 Oct;6(5):463-9 PMID: 12972047
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2008-03-00
Epub
2007-00-26
Pages
1220-6
Language
English
Region
England
NLM ID
0411011
PMCID
PMC2275079
Subset
IM
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