Home LiteratureArticle Details
PMID: 17202161 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

GenBank.

Nucleic acids research ·Vol. 35 ·No. Database issue ·2007-01-00 ·Pages D21-5

Benson DA, Karsch-Mizrachi I, Lipman DJ, Ostell J, Wheeler DL

Abstract

GenBank (R) is a comprehensive database that contains publicly available nucleotide sequences for more than 240 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, begin at the NCBI Homepage (www.ncbi.nlm.nih.gov).

MeSH Terms
Animals Base Sequence DNA, Complementary/chemistry Databases, Nucleic Acid Expressed Sequence Tags/chemistry Genomics Humans Internet National Library of Medicine (U.S.) Sequence Tagged Sites United States User-Computer Interface
Chemicals
DNA, Complementary
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Benson Dennis A
National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Building 38A, 8600 Rockville Pike, Bethesda, MD 20894, USA.
Karsch-Mizrachi Ilene
Lipman David J
Ostell James
Wheeler David L
References (10)
10 references, click to expand
  1. Database resources of the National Center for Biotechnology Information.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D173-80 PMID: 16381840
  2. Protein sequence similarity searches using patterns as seeds.
    Nucleic Acids Res. 1998 Sep 1;26(17):3986-90 PMID: 9705509
  3. Functional annotation of a full-length mouse cDNA collection.
    Nature. 2001 Feb 8;409(6821):685-90 PMID: 11217851
  4. dbEST--database for "expressed sequence tags".
    Nat Genet. 1993 Aug;4(4):332-3 PMID: 8401577
  5. GenBank.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D16-20 PMID: 16381837
  6. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  7. DDBJ in preparation for overview of research activities behind data submissions.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D6-9 PMID: 16381940
  8. CDD: a Conserved Domain Database for protein classification.
    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D192-6 PMID: 15608175
  9. EMBL Nucleotide Sequence Database: developments in 2005.
    Nucleic Acids Res. 2006 Jan 1;34(Database issue):D10-5 PMID: 16381823
  10. Genomic sequence sampling: a strategy for high resolution sequence-based physical mapping of complex genomes.
    Nat Genet. 1994 May;7(1):40-7 PMID: 8075638
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2007-01-00
Pages
D21-5
Language
English
Region
England
NLM ID
0411011
PMCID
PMC1781245
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com