Abstract
Maras salterns are located 3,380 m above sea level in the Peruvian Andes. These salterns consist of more than 3,000 little ponds which are not interconnected and act as crystallizers where salt precipitates. These ponds are fed by hypersaline spring water rich in sodium and chloride. The microbiota inhabiting these salterns was examined by fluorescence in situ hybridization (FISH), 16S rRNA gene clone library analysis, and cultivation techniques. The total counts per milliliter in the ponds were around 2 x 10(6) to 3 x 10(6) cells/ml, while the spring water contained less than 100 cells/ml and did not yield any detectable FISH signal. The microbiota inhabiting the ponds was dominated (80 to 86% of the total counts) by Archaea, while Bacteria accounted for 10 to 13% of the 4',6'-diamidino-2-phenylindole (DAPI) counts. A total of 239 16S rRNA gene clones were analyzed (132 Archaea clones and 107 Bacteria clones). According to the clone libraries, the archaeal assemblage was dominated by microorganisms related to the cosmopolitan square archaeon "Haloquadra walsbyi," although a substantial number of the sequences in the libraries (31% of the 16S rRNA gene archaeal clones) were related to Halobacterium sp., which is not normally found in clone libraries from solar salterns. All the bacterial clones were closely related to each other and to the gamma-proteobacterium "Pseudomonas halophila" DSM 3050. FISH analysis with a probe specific for this bacterial assemblage revealed that it accounted for 69 to 76% of the total bacterial counts detected with a Bacteria-specific probe. When pond water was used to inoculate solid media containing 25% total salts, both extremely halophilic Archaea and Bacteria were isolated. Archaeal isolates were not related to the isolates in clone libraries, although several bacterial isolates were very closely related to the "P. halophila" cluster found in the libraries. As observed for other hypersaline environments, extremely halophilic bacteria that had ecological relevance seemed to be easier to culture than their archaeal counterparts.
MeSH Terms
Altitude
DNA, Archaeal/genetics,isolation & purification
DNA, Bacterial/genetics,isolation & purification
Fresh Water/microbiology
Genetic Variation
Halobacterium/classification,genetics,isolation & purification
Hydrogen-Ion Concentration
Molecular Sequence Data
Peru
Phylogeny
Pseudomonas/classification,genetics,isolation & purification
Rhodospirillum/classification,genetics
Water Microbiology
Chemicals
DNA, Archaeal
DNA, Bacterial
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Maturrano Lenin
División de Microbiología, Departamento de Fisiología, Genética y Microbiología, Universidad de Alicante, Apto. 99, San Vicente del Raspeig, 03080 Alicante, Spain.
Santos Fernando
Rosselló-Mora Ramon
Antón Josefa
References (30)
30 references, click to expand
-
Archaea in coastal marine environments.
Proc Natl Acad Sci U S A. 1992 Jun 15;89(12):5685-9
PMID: 1608980
-
Combined use of cultivation-dependent and cultivation-independent methods indicates that members of most haloarchaeal groups in an Australian crystallizer pond are cultivable.
Appl Environ Microbiol. 2004 Sep;70(9):5258-65
PMID: 15345408
-
The status of the genus name Halovibrio Fendrich 1989 and the identity of the strains Pseudomonas halophila DSM 3050 and Halomonas variabilis DSM 3051. Request for an opinion.
Int J Syst Evol Microbiol. 2006 Feb;56(Pt 2):487-9
PMID: 16449462
-
The contribution of halophilic Bacteria to the red coloration of saltern crystallizer ponds(1).
FEMS Microbiol Ecol. 2001 Jul;36(2-3):123-130
PMID: 11451516
-
Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern.
Environ Microbiol. 2002 Jun;4(6):349-60
PMID: 12071980
-
Isolation and cultivation of Walsby's square archaeon.
Environ Microbiol. 2004 Dec;6(12):1287-91
PMID: 15560825
-
Rapid identification of bacteria of the Comamonadaceae with amplified ribosomal DNA-restriction analysis (ARDRA).
FEMS Microbiol Lett. 1992 Jun 15;72(3):227-33
PMID: 1354195
-
Molecular ecology of extremely halophilic Archaea and Bacteria.
FEMS Microbiol Ecol. 2002 Jan 1;39(1):1-7
PMID: 19709178
-
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference.
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W557-9
PMID: 15980534
-
Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses.
Proc Natl Acad Sci U S A. 1985 Oct;82(20):6955-9
PMID: 2413450
-
Extremely halophilic denitrifying bacteria from hypersaline inland lakes, Halovibrio denitrificans sp. nov. and Halospina denitrificans gen. nov., sp. nov., and evidence that the genus name Halovibrio Fendrich 1989 with the type species Halovibrio variabilis should be associated with DSM 3050.
Int J Syst Evol Microbiol. 2006 Feb;56(Pt 2):379-88
PMID: 16449444
-
Phylogenetic analysis and in situ identification of bacteria in activated sludge.
Appl Environ Microbiol. 1997 Jul;63(7):2884-96
PMID: 9212435
-
Salicola marasensis gen. nov., sp. nov., an extremely halophilic bacterium isolated from the Maras solar salterns in Peru.
Int J Syst Evol Microbiol. 2006 Jul;56(Pt 7):1685-91
PMID: 16825651
-
Identification of the metabolically active members of a bacterial community in a polychlorinated biphenyl-polluted moorland soil.
Environ Microbiol. 1999 Jun;1(3):199-212
PMID: 11207739
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation.
Microbiol Rev. 1995 Mar;59(1):143-69
PMID: 7535888
-
Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds.
Environ Microbiol. 1999 Dec;1(6):517-23
PMID: 11207773
-
Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern.
Microb Ecol. 1985 Jun;11(2):107-15
PMID: 24221299
-
Substrate uptake in extremely halophilic microbial communities revealed by microautoradiography and fluorescence in situ hybridization.
Extremophiles. 2003 Oct;7(5):409-13
PMID: 12820037
-
Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations.
Appl Environ Microbiol. 1990 Jun;56(6):1919-25
PMID: 2200342
-
Halotolerant aerobic heterotrophic bacteria from the Great Salt Plains of Oklahoma.
Microb Ecol. 2004 Nov;48(4):449-62
PMID: 15696379
-
Bacterial phylogeny based on comparative sequence analysis.
Electrophoresis. 1998 Apr;19(4):554-68
PMID: 9588802
-
Basic local alignment search tool.
J Mol Biol. 1990 Oct 5;215(3):403-10
PMID: 2231712
-
Identification and characterization of bacteria in a selenium-contaminated hypersaline evaporation pond.
Appl Environ Microbiol. 2001 Sep;67(9):3785-94
PMID: 11525968
-
Distribution of prokaryotic genetic diversity in athalassohaline lakes of the Atacama Desert, Northern Chile.
FEMS Microbiol Ecol. 2004 Apr 1;48(1):57-69
PMID: 19712431
-
Extremely halophilic bacteria in crystallizer ponds from solar salterns.
Appl Environ Microbiol. 2000 Jul;66(7):3052-7
PMID: 10877805
-
Diversity of Archaea in hypersaline environments characterized by molecular-phylogenetic and cultivation studies.
Extremophiles. 2002 Aug;6(4):267-74
PMID: 12215811
-
Cultivation of Walsby's square haloarchaeon.
FEMS Microbiol Lett. 2004 Sep 15;238(2):469-73
PMID: 15358434
-
Prokaryotic diversity in Zostera noltii-colonized marine sediments.
Appl Environ Microbiol. 2000 Apr;66(4):1715-9
PMID: 10742267
-
Archaeal Biodiversity in Crystallizer Ponds from a Solar Saltern: Culture versus PCR.
Microb Ecol. 2001 Jan;41(1):12-19
PMID: 11252160
-
Heteroduplexes in mixed-template amplifications: formation, consequence and elimination by 'reconditioning PCR'.
Nucleic Acids Res. 2002 May 1;30(9):2083-8
PMID: 11972349