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PMID: 16381902 Published · ppublish English Journal Article Research Support, N.I.H., Extramural

CryptoDB: a Cryptosporidium bioinformatics resource update.

Nucleic acids research ·Vol. 34 ·No. Database issue ·2006-01-01 ·Pages D419-22

Heiges M, Wang H, Robinson E, Aurrecoechea C, Gao X, Kaluskar N, Rhodes P, Wang S, He CZ, Su Y, Miller J, Kraemer E, Kissinger JC

Abstract

The database, CryptoDB (http://CryptoDB.org), is a community bioinformatics resource for the AIDS-related apicomplexan-parasite, Cryptosporidium. CryptoDB integrates whole genome sequence and annotation with expressed sequence tag and genome survey sequence data and provides supplemental bioinformatics analyses and data-mining tools. A simple, yet comprehensive web interface is available for mining and visualizing the data. CryptoDB is allied with the databases PlasmoDB and ToxoDB via ApiDB, an NIH/NIAID-fundedBioinformatics Resource Center. Recent updates to CryptoDB include the deposition of annotated genome sequences for Cryptosporidium parvum and Cryptosporidium hominis, migration to a relational database (GUS), a new query and visualization interface and the introduction of Web services.

MeSH Terms
Animals Computational Biology Cryptosporidium/genetics Cryptosporidium parvum/genetics Databases, Genetic Genome, Protozoan Genomics Internet Protozoan Proteins/chemistry,genetics Software User-Computer Interface
Chemicals
Protozoan Proteins
Authors & Affiliations
13 authors, click to expand affiliations / ORCID
Heiges Mark
Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, USA.
Wang Haiming
Robinson Edward
Aurrecoechea Cristina
Gao Xin
Kaluskar Nivedita
Rhodes Philippa
Wang Sammy
He Cong-Zhou
Su Yanqi
Miller John
Kraemer Eileen
Kissinger Jessica C
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17 references, click to expand
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gkj078
Published
2006-01-01
Pages
D419-22
Language
English
Region
England
NLM ID
0411011
PMCID
PMC1347441
Subset
IM
Grants
NIAID NIH HHS · HHSN266200400037C · United States
AHRQ HHS · HHSN266200400037C · United States
External Links
PubMed source DOI: 10.1093/nar/gkj078 PMC Full Text View journal details
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