Home LiteratureArticle Details
PMID: 16251348 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The homologous putative GTPases Grn1p from fission yeast and the human GNL3L are required for growth and play a role in processing of nucleolar pre-rRNA.

Molecular biology of the cell ·Vol. 17 ·No. 1 ·2006-01-00 ·Pages 460-74

Du X, Rao MR, Chen XQ, Wu W, Mahalingam S, Balasundaram D

Abstract

Grn1p from fission yeast and GNL3L from human cells, two putative GTPases from the novel HSR1_MMR1 GTP-binding protein subfamily with circularly permuted G-motifs play a critical role in maintaining normal cell growth. Deletion of Grn1 resulted in a severe growth defect, a marked reduction in mature rRNA species with a concomitant accumulation of the 35S pre-rRNA transcript, and failure to export the ribosomal protein Rpl25a from the nucleolus. Deleting any of the Grn1p G-domain motifs resulted in a null phenotype and nuclear/nucleolar localization consistent with the lack of nucleolar export of preribosomes accompanied by a distortion of nucleolar structure. Heterologous expression of GNL3L in a Deltagrn1 mutant restored processing of 35S pre-rRNA, nuclear export of Rpl25a and cell growth to wild-type levels. Genetic complementation in yeast and siRNA knockdown in HeLa cells confirmed the homologous proteins Grn1p and GNL3L are required for growth. Failure of two similar HSR1_MMR1 putative nucleolar GTPases, Nucleostemin (NS), or the dose-dependent response of breast tumor autoantigen NGP-1, to rescue deltagrn1 implied the highly specific roles of Grn1p or GNL3L in nucleolar events. Our analysis uncovers an important role for Grn1p/GNL3L within this unique group of nucleolar GTPases.

MeSH Terms
Active Transport, Cell Nucleus Amino Acid Sequence Cell Nucleolus/genetics,metabolism Cell Proliferation Conserved Sequence GTP Phosphohydrolases/chemistry,classification,genetics,metabolism GTP-Binding Proteins Gene Deletion HeLa Cells Humans Models, Molecular Mutation/genetics Nuclear Proteins Protein Binding Protein Structure, Tertiary RNA Precursors/genetics Ribosomal Proteins/genetics,metabolism Schizosaccharomyces/cytology,enzymology,genetics Schizosaccharomyces pombe Proteins/chemistry,classification,genetics,metabolism Sequence Alignment
Chemicals
GNL3L protein, human Nuclear Proteins RNA Precursors Ribosomal Proteins Schizosaccharomyces pombe Proteins GTP Phosphohydrolases GTP-Binding Proteins Grn1 protein, S pombe
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Du Xianming
Laboratory of Nucleopore Biology, Institute of Molecular and Cell Biology, National University of Singapore, Singapore 117609, Singapore.
Rao Malireddi R K Subba
Chen Xue Qin
Wu Wei
Mahalingam Sundarasamy
Balasundaram David
References (73)
73 references, click to expand
  1. Domain III of Saccharomyces cerevisiae 25 S ribosomal RNA: its role in binding of ribosomal protein L25 and 60 S subunit formation.
    J Mol Biol. 2000 Feb 11;296(1):7-17 PMID: 10656814
  2. Ribosome synthesis in Saccharomyces cerevisiae.
    Annu Rev Genet. 1999;33:261-311 PMID: 10690410
  3. The nucleolus: an old factory with unexpected capabilities.
    Trends Cell Biol. 2000 May;10(5):189-96 PMID: 10754561
  4. Assembly and functional organization of the nucleolus: ultrastructural analysis of Saccharomyces cerevisiae mutants.
    Mol Biol Cell. 2000 Jun;11(6):2175-89 PMID: 10848637
  5. To be or not to be in the nucleolus.
    Nat Cell Biol. 2000 Jun;2(6):E107-12 PMID: 10854340
  6. Factors affecting nuclear export of the 60S ribosomal subunit in vivo.
    Mol Biol Cell. 2000 Nov;11(11):3777-89 PMID: 11071906
  7. Small GTP-binding proteins.
    Physiol Rev. 2001 Jan;81(1):153-208 PMID: 11152757
  8. Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p.
    Mol Cell Biol. 2001 May;21(10):3405-15 PMID: 11313466
  9. Functional architecture in the cell nucleus.
    Biochem J. 2001 Jun 1;356(Pt 2):297-310 PMID: 11368755
  10. Cloning of a novel nucleolar guanosine 5'-triphosphate binding protein autoantigen from a breast tumor.
    Cell Growth Differ. 1996 Feb;7(2):271-80 PMID: 8822211
  11. Direct and indirect association of the small GTPase ran with nuclear pore proteins and soluble transport factors: studies in Xenopus laevis egg extracts.
    Mol Biol Cell. 1996 Sep;7(9):1319-34 PMID: 8885229
  12. Structural and functional analysis of the nucleolus of the fission yeast Schizosaccharomyces pombe.
    Eur J Cell Biol. 1997 Jan;72(1):13-23 PMID: 9013721
  13. The Josef Steiner Lecture: CDKs and cell-cycle control in fission yeast: relevance to other eukaryotes and cancer.
    Int J Cancer. 1997 May 29;71(5):707-8 PMID: 9180132
  14. The ribosomal-RNA-processing pathway in Schizosaccharomyces pombe.
    Eur J Biochem. 1997 Jul 1;247(1):314-21 PMID: 9249042
  15. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  16. 14-3-3sigma is a p53-regulated inhibitor of G2/M progression.
    Mol Cell. 1997 Dec;1(1):3-11 PMID: 9659898
  17. Heterologous modules for efficient and versatile PCR-based gene targeting in Schizosaccharomyces pombe.
    Yeast. 1998 Jul;14(10):943-51 PMID: 9717240
  18. Maturation and intranuclear transport of pre-ribosomes requires Noc proteins.
    Cell. 2001 May 18;105(4):499-509 PMID: 11371346
  19. Identification of a 60S preribosomal particle that is closely linked to nuclear export.
    Mol Cell. 2001 Sep;8(3):517-29 PMID: 11583615
  20. Nog2p, a putative GTPase associated with pre-60S subunits and required for late 60S maturation steps.
    EMBO J. 2001 Nov 15;20(22):6475-84 PMID: 11707418
  21. Directed proteomic analysis of the human nucleolus.
    Curr Biol. 2002 Jan 8;12(1):1-11 PMID: 11790298
  22. Nucleolomics: an inventory of the nucleolus.
    Mol Cell. 2002 Jan;9(1):5-7 PMID: 11804579
  23. All three functional domains of the large ribosomal subunit protein L25 are required for both early and late pre-rRNA processing steps in Saccharomyces cerevisiae.
    Nucleic Acids Res. 2001 Dec 15;29(24):5001-8 PMID: 11812830
  24. Classification and evolution of P-loop GTPases and related ATPases.
    J Mol Biol. 2002 Mar 15;317(1):41-72 PMID: 11916378
  25. Making ribosomes.
    Curr Opin Cell Biol. 2002 Jun;14(3):313-8 PMID: 12067653
  26. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
    Mol Cell. 2002 Jul;10(1):105-15 PMID: 12150911
  27. Conventional and nonconventional roles of the nucleolus.
    Int Rev Cytol. 2002;219:199-266 PMID: 12211630
  28. YjeQ, an essential, conserved, uncharacterized protein from Escherichia coli, is an unusual GTPase with circularly permuted G-motifs and marked burst kinetics.
    Biochemistry. 2002 Sep 17;41(37):11109-17 PMID: 12220175
  29. 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.
    EMBO J. 2002 Oct 15;21(20):5539-47 PMID: 12374754
  30. Functional proteomic analysis of human nucleolus.
    Mol Biol Cell. 2002 Nov;13(11):4100-9 PMID: 12429849
  31. A nucleolar mechanism controlling cell proliferation in stem cells and cancer cells.
    Genes Dev. 2002 Dec 1;16(23):2991-3003 PMID: 12464630
  32. Cell proliferation. Common control for cancer, stem cells.
    Science. 2002 Dec 6;298(5600):1869 PMID: 12471231
  33. The nucleolus: at the stem of immortality.
    Nat Med. 2003 Jan;9(1):24-5 PMID: 12514717
  34. A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits.
    J Biol Chem. 2003 Feb 7;278(6):4072-81 PMID: 12446671
  35. Pre-ribosomes on the road from the nucleolus to the cytoplasm.
    Trends Cell Biol. 2003 May;13(5):255-63 PMID: 12742169
  36. Characterization of mesenchymal stem cells isolated from murine bone marrow by negative selection.
    J Cell Biochem. 2003 Aug 15;89(6):1235-49 PMID: 12898521
  37. Isolation and characterization of neural progenitor cells from post-mortem human cortex.
    J Neurosci Res. 2003 Dec 15;74(6):838-51 PMID: 14648588
  38. Bioinformatic analysis of the nucleolus.
    Biochem J. 2003 Dec 15;376(Pt 3):553-69 PMID: 14531731
  39. Membrane properties of rat embryonic multipotent neural stem cells.
    J Neurochem. 2004 Jan;88(1):212-26 PMID: 14675165
  40. The Pfam protein families database.
    Nucleic Acids Res. 2004 Jan 1;32(Database issue):D138-41 PMID: 14681378
  41. Complete sequencing and characterization of 21,243 full-length human cDNAs.
    Nat Genet. 2004 Jan;36(1):40-5 PMID: 14702039
  42. Sensing cellular stress: another new function for the nucleolus?
    Sci STKE. 2004 Mar 16;2004(224):pe10 PMID: 15026578
  43. Insights into the evolution of the nucleolus by an analysis of its protein domain repertoire.
    Bioessays. 2004 May;26(5):567-81 PMID: 15112237
  44. Role of nucleostemin in growth regulation of gastric cancer, liver cancer and other malignancies.
    World J Gastroenterol. 2004 May 1;10(9):1246-9 PMID: 15112336
  45. Identification of genes encoding putative nucleoporins and transport factors in the fission yeast Schizosaccharomyces pombe: a deletion analysis.
    Yeast. 2004 Apr 30;21(6):495-509 PMID: 15116432
  46. Periodic gene expression program of the fission yeast cell cycle.
    Nat Genet. 2004 Aug;36(8):809-17 PMID: 15195092
  47. A novel tumor cell line cloned from mutated human embryonic bone marrow mesenchymal stem cells.
    Oncol Rep. 2004 Sep;12(3):501-8 PMID: 15289828
  48. Complementation used to clone a human homologue of the fission yeast cell cycle control gene cdc2.
    Nature. 1987 May 7-13;327(6117):31-5 PMID: 3553962
  49. Interaction of ribosomal proteins L25 from yeast and EL23 from E. coli with yeast 26S and mouse 28S rRNA.
    Biochimie. 1987 Sep;69(9):939-48 PMID: 3126831
  50. Identification and characterization of a yeast nucleolar protein that is similar to a rat liver nucleolar protein.
    J Cell Biol. 1988 Jul;107(1):17-31 PMID: 3292539
  51. Cell cycle control genes in fission yeast and mammalian cells.
    Trends Genet. 1988 Oct;4(10):287-90 PMID: 3076289
  52. Isolation and sequencing of NOP1. A yeast gene encoding a nucleolar protein homologous to a human autoimmune antigen.
    J Biol Chem. 1990 Feb 5;265(4):2209-15 PMID: 2298745
  53. Molecular genetic analysis of fission yeast Schizosaccharomyces pombe.
    Methods Enzymol. 1991;194:795-823 PMID: 2005825
  54. Feedback controls and G2 checkpoints: fission yeast as a model system.
    Bioessays. 1993 Dec;15(12):775-82 PMID: 8141795
  55. Structure and evolution of a member of a new subfamily of GTP-binding proteins mapping to the human MHC class I region.
    Mamm Genome. 1994 Feb;5(2):100-5 PMID: 8180467
  56. Interactions between a nuclear transporter and a subset of nuclear pore complex proteins depend on Ran GTPase.
    Mol Cell Biol. 1999 Feb;19(2):1547-57 PMID: 9891088
  57. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization.
    Trends Biochem Sci. 1999 Jan;24(1):34-6 PMID: 10087920
  58. A novel in vivo assay reveals inhibition of ribosomal nuclear export in ran-cycle and nucleoporin mutants.
    J Cell Biol. 1999 Feb 8;144(3):389-401 PMID: 9971735
  59. Nuclear RNA export in yeast.
    FEBS Lett. 1999 Jun 4;452(1-2):77-81 PMID: 10376682
  60. Nup124p is a nuclear pore factor of Schizosaccharomyces pombe that is important for nuclear import and activity of retrotransposon Tf1.
    Mol Cell Biol. 1999 Aug;19(8):5768-84 PMID: 10409764
  61. Nuclear export of the small ribosomal subunit requires the ran-GTPase cycle and certain nucleoporins.
    Genes Dev. 1999 Aug 15;13(16):2118-33 PMID: 10465789
  62. The effect of knocking-down nucleostemin gene expression on the in vitro proliferation and in vivo tumorigenesis of HeLa cells.
    J Exp Clin Cancer Res. 2004 Sep;23(3):529-38 PMID: 15595646
  63. CDD: a Conserved Domain Database for protein classification.
    Nucleic Acids Res. 2005 Jan 1;33(Database issue):D192-6 PMID: 15608175
  64. Going in GTP cycles in the nucleolus.
    J Cell Biol. 2005 Jan 17;168(2):177-8 PMID: 15657389
  65. A multistep, GTP-driven mechanism controlling the dynamic cycling of nucleostemin.
    J Cell Biol. 2005 Jan 17;168(2):179-84 PMID: 15657390
  66. Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex.
    Cell Cycle. 2004 Dec;3(12):1612-37 PMID: 15611647
  67. Preparation and characterization of monoclonal antibodies against nucleostemin, a protein that controls cell proliferation in stem cells and cancer cells.
    Hybridoma (Larchmt). 2005 Feb;24(1):36-41 PMID: 15785207
  68. The functionally conserved nucleoporins Nup124p from fission yeast and the human Nup153 mediate nuclear import and activity of the Tf1 retrotransposon and HIV-1 Vpr.
    Mol Biol Cell. 2005 Apr;16(4):1823-38 PMID: 15659641
  69. Birth of a nucleolus: the evolution of nucleolar compartments.
    Trends Cell Biol. 2005 Apr;15(4):194-9 PMID: 15817375
  70. Subcellular recruitment by TSG118 and TSPYL implicates a role for zinc finger protein 106 in a novel developmental pathway.
    Int J Biochem Cell Biol. 2005 Jul;37(7):1421-37 PMID: 15833274
  71. The moving parts of the nucleolus.
    Histochem Cell Biol. 2005 Mar;123(3):203-16 PMID: 15742198
  72. A nonribosomal landscape in the nucleolus revealed by the stem cell protein nucleostemin.
    Mol Biol Cell. 2005 Jul;16(7):3401-10 PMID: 15857956
  73. The COG database: a tool for genome-scale analysis of protein functions and evolution.
    Nucleic Acids Res. 2000 Jan 1;28(1):33-6 PMID: 10592175
Article Info
Journal
Molecular biology of the cell
Abbr.
Mol Biol Cell
ISSN
1059-1524
Published
2006-01-00
Epub
2005-00-26
Pages
460-74
Language
English
Region
United States
NLM ID
9201390
PMCID
PMC1345682
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com