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PMID: 15861141 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Crystal structure of the human urokinase plasminogen activator receptor bound to an antagonist peptide.

The EMBO journal ·Vol. 24 ·No. 9 ·2005-05-04 ·Pages 1655-63

Llinas P, Le Du MH, Gårdsvoll H, Danø K, Ploug M, Gilquin B, Stura EA, Ménez A

Abstract

We report the crystal structure of a soluble form of human urokinase-type plasminogen activator receptor (uPAR/CD87), which is expressed at the invasive areas of the tumor-stromal microenvironment in many human cancers. The structure was solved at 2.7 A in association with a competitive peptide inhibitor of the urokinase-type plasminogen activator (uPA)-uPAR interaction. uPAR is composed of three consecutive three-finger domains organized in an almost circular manner, which generates both a deep internal cavity where the peptide binds in a helical conformation, and a large external surface. This knowledge combined with the discovery of a convergent binding motif shared by the antagonist peptide and uPA allowed us to build a model of the human uPA-uPAR complex. This model reveals that the receptor-binding module of uPA engages the uPAR central cavity, thus leaving the external receptor surface accessible for other protein interactions (vitronectin and integrins). By this unique structural assembly, uPAR can orchestrate the fine interplay with the partners that are required to guide uPA-focalized proteolysis on the cell surface and control cell adhesion and migration.

MeSH Terms
Crystallization/methods Humans Molecular Conformation Peptides/chemistry,metabolism Protein Binding Receptors, Cell Surface/antagonists & inhibitors,chemistry,metabolism Receptors, Urokinase Plasminogen Activator Recombinant Proteins/chemistry Urokinase-Type Plasminogen Activator/chemistry,metabolism
Chemicals
PLAUR protein, human Peptides Receptors, Cell Surface Receptors, Urokinase Plasminogen Activator Recombinant Proteins Urokinase-Type Plasminogen Activator
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Llinas Paola
CEA, Département d'Ingénierie et d'Etudes des Protéines, CE Saclay, Gif sur Yvette, France.
Le Du Marie Hélène
Gårdsvoll Henrik
Danø Keld
Ploug Michael
Gilquin Bernard
Stura Enrico A
Ménez André
References (56)
56 references, click to expand
  1. Plasma urokinase receptor levels in patients with colorectal cancer: relationship to prognosis.
    J Natl Cancer Inst. 1999 May 19;91(10):869-74 PMID: 10340907
  2. Mapping part of the functional epitope for ligand binding on the receptor for urokinase-type plasminogen activator by site-directed mutagenesis.
    J Biol Chem. 1999 Dec 31;274(53):37995-8003 PMID: 10608868
  3. Three dimensional structure of erabutoxin b neurotoxic protein: inhibitor of acetylcholine receptor.
    Proc Natl Acad Sci U S A. 1976 Sep;73(9):2991-4 PMID: 1067597
  4. A region in domain II of the urokinase receptor required for urokinase binding.
    J Biol Chem. 2000 Sep 15;275(37):28532-8 PMID: 10864923
  5. Crystal structure of the BMP-2-BRIA ectodomain complex.
    Nat Struct Biol. 2000 Jun;7(6):492-6 PMID: 10881198
  6. Urokinase-type plasminogen activator and its receptor synergize to promote pathogenic proteolysis.
    EMBO J. 2000 Sep 1;19(17):4817-26 PMID: 10970872
  7. Soluble urokinase receptor levels correlate with number of circulating tumor cells in acute myeloid leukemia and decrease rapidly during chemotherapy.
    Cancer Res. 2000 Dec 15;60(24):7126-32 PMID: 11156421
  8. Differential binding of urokinase and peptide antagonists to the urokinase receptor: evidence from characterization of the receptor in four primate species.
    Biol Chem. 2001 Mar;382(3):435-42 PMID: 11347891
  9. Peptide-derived antagonists of the urokinase receptor. affinity maturation by combinatorial chemistry, identification of functional epitopes, and inhibitory effect on cancer cell intravasation.
    Biochemistry. 2001 Oct 9;40(40):12157-68 PMID: 11580291
  10. Urokinase receptors promote beta1 integrin function through interactions with integrin alpha3beta1.
    Mol Biol Cell. 2001 Oct;12(10):2975-86 PMID: 11598185
  11. NMR structure of bucandin, a neurotoxin from the venom of the Malayan krait (Bungarus candidus).
    Biochem J. 2001 Dec 15;360(Pt 3):539-48 PMID: 11736642
  12. Crystal structure of the human TbetaR2 ectodomain--TGF-beta3 complex.
    Nat Struct Biol. 2002 Mar;9(3):203-8 PMID: 11850637
  13. High-affinity urokinase-derived cyclic peptides inhibiting urokinase/urokinase receptor-interaction: effects on tumor growth and spread.
    FEBS Lett. 2002 Sep 25;528(1-3):212-6 PMID: 12297307
  14. Convergence of the adhesive and fibrinolytic systems: recognition of urokinase by integrin alpha Mbeta 2 as well as by the urokinase receptor regulates cell adhesion and migration.
    Blood. 2003 Feb 15;101(4):1582-90 PMID: 12393547
  15. Synthesis, solution structure, and biological evaluation of urokinase type plasminogen activator (uPA)-derived receptor binding domain mimetics.
    J Med Chem. 2002 Nov 7;45(23):4984-94 PMID: 12408709
  16. Modeling the structure of agitoxin in complex with the Shaker K+ channel: a computational approach based on experimental distance restraints extracted from thermodynamic mutant cycles.
    Biophys J. 2002 Nov;83(5):2595-609 PMID: 12414693
  17. uPAR: a versatile signalling orchestrator.
    Nat Rev Mol Cell Biol. 2002 Dec;3(12):932-43 PMID: 12461559
  18. New developments in the urokinase-type plasminogen activator system.
    Expert Opin Ther Targets. 2001 Dec;5(6):711-722 PMID: 12540280
  19. Structures of an ActRIIB:activin A complex reveal a novel binding mode for TGF-beta ligand:receptor interactions.
    EMBO J. 2003 Apr 1;22(7):1555-66 PMID: 12660162
  20. Sequences within domain II of the urokinase receptor critical for differential ligand recognition.
    J Biol Chem. 2003 Aug 8;278(32):29925-32 PMID: 12761227
  21. How vitronectin binds PAI-1 to modulate fibrinolysis and cell migration.
    Nat Struct Biol. 2003 Jul;10(7):541-4 PMID: 12808446
  22. Structure-function relationships in the interaction between the urokinase-type plasminogen activator and its receptor.
    Curr Pharm Des. 2003;9(19):1499-528 PMID: 12871065
  23. Dimerization controls the lipid raft partitioning of uPAR/CD87 and regulates its biological functions.
    EMBO J. 2003 Nov 17;22(22):5994-6003 PMID: 14609946
  24. Characterization of low-glycosylated forms of soluble human urokinase receptor expressed in Drosophila Schneider 2 cells after deletion of glycosylation-sites.
    Protein Expr Purif. 2004 Apr;34(2):284-95 PMID: 15003263
  25. Structural analysis and tissue localization of human C4.4A: a protein homologue of the urokinase receptor.
    Biochem J. 2004 Jun 15;380(Pt 3):845-57 PMID: 15012588
  26. Plasminogen mediates the pathological effects of urokinase-type plasminogen activator overexpression.
    Am J Pathol. 2004 Jun;164(6):2299-304 PMID: 15161662
  27. The urokinase receptor as a potential target in cancer therapy.
    Curr Pharm Des. 2004;10(19):2359-76 PMID: 15279614
  28. Dynamics of urokinase receptor interaction with Peptide antagonists studied by amide hydrogen exchange and mass spectrometry.
    Biochemistry. 2004 Nov 30;43(47):15044-57 PMID: 15554712
  29. A model for the three-dimensional structure of human plasma vitronectin from small-angle scattering measurements.
    Biochemistry. 2005 Jan 18;44(2):565-74 PMID: 15641781
  30. Two alternatively spliced mouse urokinase receptor mRNAs with different histological localization in the gastrointestinal tract.
    J Cell Biol. 1991 Dec;115(6):1763-71 PMID: 1661735
  31. Cloning and expression of the receptor for human urokinase plasminogen activator, a central molecule in cell surface, plasmin dependent proteolysis.
    EMBO J. 1990 Feb;9(2):467-74 PMID: 1689240
  32. Cellular receptor for urokinase plasminogen activator. Carboxyl-terminal processing and membrane anchoring by glycosyl-phosphatidylinositol.
    J Biol Chem. 1991 Jan 25;266(3):1926-33 PMID: 1846368
  33. All-atom empirical potential for molecular modeling and dynamics studies of proteins.
    J Phys Chem B. 1998 Apr 30;102(18):3586-616 PMID: 24889800
  34. Plasminogen activation initiated by single-chain urokinase-type plasminogen activator. Potentiation by U937 monocytes.
    J Biol Chem. 1989 Feb 5;264(4):2185-8 PMID: 2521625
  35. Characterization of the cellular binding site for the urokinase-type plasminogen activator.
    J Biol Chem. 1989 Jan 15;264(2):1180-9 PMID: 2536017
  36. Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-26 PMID: 27754618
  37. [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.
    Methods Enzymol. 1997;276:472-494 PMID: 27799110
  38. The receptor-binding sequence of urokinase. A biological function for the growth-factor module of proteases.
    J Biol Chem. 1987 Apr 5;262(10):4437-40 PMID: 3031025
  39. Individual development and uPA-receptor expression of disseminated tumour cells in bone marrow: a reference to early systemic disease in solid cancer.
    Nat Med. 1995 Oct;1(10):1035-9 PMID: 7489359
  40. Structure of a soluble, glycosylated form of the human complement regulatory protein CD59.
    Structure. 1994 Mar 15;2(3):185-99 PMID: 7520819
  41. Identification of the urokinase receptor as an adhesion receptor for vitronectin.
    J Biol Chem. 1994 Dec 23;269(51):32380-8 PMID: 7528215
  42. Chemical modification of the urokinase-type plasminogen activator and its receptor using tetranitromethane. Evidence for the involvement of specific tyrosine residues in both molecules during receptor-ligand interaction.
    Biochemistry. 1995 Oct 3;34(39):12524-34 PMID: 7548000
  43. High-affinity urokinase receptor antagonists identified with bacteriophage peptide display.
    Proc Natl Acad Sci U S A. 1994 Jul 19;91(15):7129-33 PMID: 8041758
  44. Structure-function relationships in the receptor for urokinase-type plasminogen activator. Comparison to other members of the Ly-6 family and snake venom alpha-neurotoxins.
    FEBS Lett. 1994 Aug 1;349(2):163-8 PMID: 8050560
  45. Solution structure of the amino-terminal fragment of urokinase-type plasminogen activator.
    Biochemistry. 1994 Apr 26;33(16):4847-64 PMID: 8161544
  46. Localization of the disulfide bonds in the NH2-terminal domain of the cellular receptor for human urokinase-type plasminogen activator. A domain structure belonging to a novel superfamily of glycolipid-anchored membrane proteins.
    J Biol Chem. 1993 Aug 15;268(23):17539-46 PMID: 8394346
  47. Systematic mutational analysis of the receptor-binding region of the human urokinase-type plasminogen activator.
    Eur J Biochem. 1996 May 1;237(3):743-51 PMID: 8647121
  48. Regulation of integrin function by the urokinase receptor.
    Science. 1996 Sep 13;273(5281):1551-5 PMID: 8703217
  49. Is plasminogen activator inhibitor-1 the molecular switch that governs urokinase receptor-mediated cell adhesion and release?
    J Cell Biol. 1996 Sep;134(6):1563-71 PMID: 8830783
  50. Elevated plasma levels of urokinase plasminogen activator receptor in non-small cell lung cancer patients.
    Eur J Cancer. 1997 May;33(6):867-72 PMID: 9291807
  51. A urokinase-sensitive region of the human urokinase receptor is responsible for its chemotactic activity.
    EMBO J. 1997 Dec 15;16(24):7279-86 PMID: 9405357
  52. Photoaffinity labeling of the human receptor for urokinase-type plasminogen activator using a decapeptide antagonist. Evidence for a composite ligand-binding site and a short interdomain separation.
    Biochemistry. 1998 Mar 17;37(11):3612-22 PMID: 9521680
  53. Binding of human single chain urokinase to Chinese Hamster Ovary cells and cloning of hamster u-PAR.
    Thromb Haemost. 1998 Jul;80(1):148-54 PMID: 9684801
  54. Identification of specific sites involved in ligand binding by photoaffinity labeling of the receptor for the urokinase-type plasminogen activator. Residues located at equivalent positions in uPAR domains I and III participate in the assembly of a composite ligand-binding site.
    Biochemistry. 1998 Nov 24;37(47):16494-505 PMID: 9843416
  55. Three-finger toxin fold for the extracellular ligand-binding domain of the type II activin receptor serine kinase.
    Nat Struct Biol. 1999 Jan;6(1):18-22 PMID: 9886286
  56. The atomic structure of protein-protein recognition sites.
    J Mol Biol. 1999 Feb 5;285(5):2177-98 PMID: 9925793
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2005-05-04
Epub
2005-00-07
Pages
1655-63
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1142576
Subset
IM
Databases
PDB
Analysis Services
Analysis Services

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