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PMID: 15767671 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Evidence that the elongation factor TFIIS plays a role in transcription initiation at GAL1 in Saccharomyces cerevisiae.

Molecular and cellular biology ·Vol. 25 ·No. 7 ·2005-04-00 ·Pages 2650-9

Prather DM, Larschan E, Winston F

Abstract

TFIIS is a transcription elongation factor that has been extensively studied biochemically. Although the in vitro mechanisms by which TFIIS stimulates RNA transcript cleavage and polymerase read-through have been well characterized, its in vivo roles remain unclear. To better understand TFIIS function in vivo, we have examined its role during Gal4-mediated activation of the Saccharomyces cerevisiae GAL1 gene. Surprisingly, TFIIS is strongly associated with the GAL1 upstream activating sequence. In addition, TFIIS recruitment to Gal4-binding sites is dependent on Gal4, SAGA, and Mediator but not on RNA polymerase II (Pol II). The association of TFIIS is also necessary for the optimal recruitment of TATA-binding protein and Pol II to the GAL1 promoter. These results provide strong evidence that TFIIS plays an important role in the initiation of transcription at GAL1 in addition to its well-characterized roles in transcription elongation.

MeSH Terms
Binding Sites DNA-Binding Proteins Galactokinase/genetics Gene Expression Regulation, Fungal Genes, Fungal/genetics Promoter Regions, Genetic/genetics Protein Binding RNA Polymerase II/metabolism Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins/genetics,metabolism Temperature Transcription Factors/metabolism Transcription, Genetic/genetics Transcriptional Elongation Factors/genetics,metabolism
Chemicals
DNA-Binding Proteins GAL4 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factors Transcriptional Elongation Factors transcription factor S-II Galactokinase RNA Polymerase II
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Prather Donald M
Department of Genetics, Harvard Medical School, 77 Louis Pasteur Ave., Boston, MA 02115, USA.
Larschan Erica
Winston Fred
References (57)
57 references, click to expand
  1. The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.
    Nature. 1999 Jul 15;400(6741):284-8 PMID: 10421373
  2. SPT5, an essential gene important for normal transcription in Saccharomyces cerevisiae, encodes an acidic nuclear protein with a carboxy-terminal repeat.
    Mol Cell Biol. 1991 Jun;11(6):3009-19 PMID: 1840633
  3. Transcription elongation factor SII.
    Bioessays. 2000 Apr;22(4):327-36 PMID: 10723030
  4. The Saccharomyces cerevisiae Srb8-Srb11 complex functions with the SAGA complex during Gal4-activated transcription.
    Mol Cell Biol. 2005 Jan;25(1):114-23 PMID: 15601835
  5. Distinct classes of yeast promoters revealed by differential TAF recruitment.
    Science. 2000 May 19;288(5469):1242-4 PMID: 10817999
  6. TAF-Containing and TAF-independent forms of transcriptionally active TBP in vivo.
    Science. 2000 May 19;288(5469):1244-8 PMID: 10818000
  7. Genetic interactions between TFIIS and the Swi-Snf chromatin-remodeling complex.
    Mol Cell Biol. 2000 Aug;20(16):5960-73 PMID: 10913179
  8. Mediator of transcriptional regulation.
    Annu Rev Biochem. 2000;69:729-49 PMID: 10966474
  9. Saccharomyces cerevisiae transcription elongation mutants are defective in PUR5 induction in response to nucleotide depletion.
    Mol Cell Biol. 2000 Oct;20(20):7427-37 PMID: 11003640
  10. Synthetic lethal interactions suggest a role for the Saccharomyces cerevisiae Rtf1 protein in transcription elongation.
    Genetics. 2000 Oct;156(2):535-47 PMID: 11014804
  11. Different phosphorylated forms of RNA polymerase II and associated mRNA processing factors during transcription.
    Genes Dev. 2000 Oct 1;14(19):2452-60 PMID: 11018013
  12. Cajal bodies: the first 100 years.
    Annu Rev Cell Dev Biol. 2000;16:273-300 PMID: 11031238
  13. In vivo requirement of activator-specific binding targets of mediator.
    Mol Cell Biol. 2000 Dec;20(23):8709-19 PMID: 11073972
  14. A transcription reinitiation intermediate that is stabilized by activator.
    Nature. 2000 Nov 9;408(6809):225-9 PMID: 11089979
  15. Genome-wide location and function of DNA binding proteins.
    Science. 2000 Dec 22;290(5500):2306-9 PMID: 11125145
  16. Analysis of gene induction and arrest site transcription in yeast with mutations in the transcription elongation machinery.
    J Biol Chem. 2001 Apr 13;276(15):11531-8 PMID: 11278887
  17. TFIIS enhances transcriptional elongation through an artificial arrest site in vivo.
    Mol Cell Biol. 2001 Jul;21(13):4162-8 PMID: 11390645
  18. SAGA is an essential in vivo target of the yeast acidic activator Gal4p.
    Genes Dev. 2001 Aug 1;15(15):1935-45 PMID: 11485988
  19. The S. cerevisiae SAGA complex functions in vivo as a coactivator for transcriptional activation by Gal4.
    Genes Dev. 2001 Aug 1;15(15):1946-56 PMID: 11485989
  20. Promoter clearance by RNA polymerase II is an extended, multistep process strongly affected by sequence.
    Mol Cell Biol. 2001 Sep;21(17):5815-25 PMID: 11486021
  21. H2A.Z is required for global chromatin integrity and for recruitment of RNA polymerase II under specific conditions.
    Mol Cell Biol. 2001 Sep;21(18):6270-9 PMID: 11509669
  22. Genetic interactions of Spt4-Spt5 and TFIIS with the RNA polymerase II CTD and CTD modifying enzymes in Saccharomyces cerevisiae.
    Genetics. 2001 Oct;159(2):487-97 PMID: 11606527
  23. Exchange of RNA polymerase II initiation and elongation factors during gene expression in vivo.
    Mol Cell. 2002 Apr;9(4):799-809 PMID: 11983171
  24. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress.
    Mol Cell. 2002 Jun;9(6):1307-17 PMID: 12086627
  25. Analysis of Spt7 function in the Saccharomyces cerevisiae SAGA coactivator complex.
    Mol Cell Biol. 2002 Aug;22(15):5367-79 PMID: 12101232
  26. RNA polymerase II transcription complexes may become arrested if the nascent RNA is shortened to less than 50 nucleotides.
    J Biol Chem. 2002 Sep 6;277(36):32527-37 PMID: 12087087
  27. Promoting elongation with transcript cleavage stimulatory factors.
    Biochim Biophys Acta. 2002 Sep 13;1577(2):287-307 PMID: 12213659
  28. Differential requirement of SAGA components for recruitment of TATA-box-binding protein to promoters in vivo.
    Mol Cell Biol. 2002 Nov;22(21):7365-71 PMID: 12370284
  29. Subnuclear localization and Cajal body targeting of transcription elongation factor TFIIS in amphibian oocytes.
    Mol Biol Cell. 2003 Mar;14(3):1255-67 PMID: 12631738
  30. A multiplicity of coactivators is required by Gcn4p at individual promoters in vivo.
    Mol Cell Biol. 2003 Apr;23(8):2800-20 PMID: 12665580
  31. Chromatin remodeling protein Chd1 interacts with transcription elongation factors and localizes to transcribed genes.
    EMBO J. 2003 Apr 15;22(8):1846-56 PMID: 12682017
  32. Independent recruitment in vivo by Gal4 of two complexes required for transcription.
    Mol Cell. 2003 May;11(5):1301-9 PMID: 12769853
  33. Architecture of the RNA polymerase II-TFIIS complex and implications for mRNA cleavage.
    Cell. 2003 Aug 8;114(3):347-57 PMID: 12914699
  34. Transcription elongation factors repress transcription initiation from cryptic sites.
    Science. 2003 Aug 22;301(5636):1096-9 PMID: 12934008
  35. The FACT complex travels with elongating RNA polymerase II and is important for the fidelity of transcriptional initiation in vivo.
    Mol Cell Biol. 2003 Nov;23(22):8323-33 PMID: 14585989
  36. Isw1 chromatin remodeling ATPase coordinates transcription elongation and termination by RNA polymerase II.
    Cell. 2003 Nov 14;115(4):425-35 PMID: 14622597
  37. Association of the Mediator complex with enhancers of active genes.
    Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):13887-91 PMID: 14623974
  38. A Snf2 family ATPase complex required for recruitment of the histone H2A variant Htz1.
    Mol Cell. 2003 Dec;12(6):1565-76 PMID: 14690608
  39. Transitions in RNA polymerase II elongation complexes at the 3' ends of genes.
    EMBO J. 2004 Jan 28;23(2):354-64 PMID: 14739930
  40. In vivo target of a transcriptional activator revealed by fluorescence resonance energy transfer.
    Genes Dev. 2004 Feb 1;18(3):333-43 PMID: 14871930
  41. Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition.
    Genetics. 2004 Mar;166(3):1215-27 PMID: 15082542
  42. Members of the SAGA and Mediator complexes are partners of the transcription elongation factor TFIIS.
    EMBO J. 2004 Oct 27;23(21):4232-42 PMID: 15359273
  43. Complete sequence of a eukaryotic regulatory gene.
    EMBO J. 1983;2(11):2071-3 PMID: 6139279
  44. Stimulation of transcript elongation requires both the zinc finger and RNA polymerase II binding domains of human TFIIS.
    Biochemistry. 1991 Aug 6;30(31):7842-51 PMID: 1868060
  45. 6-Azauracil inhibition of GTP biosynthesis in Saccharomyces cerevisiae.
    Curr Genet. 1992 Jul;22(1):9-11 PMID: 1611672
  46. The RNA polymerase II ternary complex cleaves the nascent transcript in a 3'----5' direction in the presence of elongation factor SII.
    Genes Dev. 1992 Jul;6(7):1342-56 PMID: 1378419
  47. Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C.
    Yeast. 1995 Jan;11(1):53-5 PMID: 7762301
  48. Use of polymerase chain reaction epitope tagging for protein tagging in Saccharomyces cerevisiae.
    Yeast. 1995 Oct;11(13):1265-74 PMID: 8553697
  49. Interaction of elongation factors TFIIS and elongin A with a human RNA polymerase II holoenzyme capable of promoter-specific initiation and responsive to transcriptional activators.
    J Biol Chem. 1997 Sep 26;272(39):24563-71 PMID: 9305922
  50. Evidence that Spt4, Spt5, and Spt6 control transcription elongation by RNA polymerase II in Saccharomyces cerevisiae.
    Genes Dev. 1998 Feb 1;12(3):357-69 PMID: 9450930
  51. Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications.
    Yeast. 1998 Jan 30;14(2):115-32 PMID: 9483801
  52. Preferential interaction of the mRNA proofreading factor TFIIS zinc ribbon with rU.dA base pairs correlates with its function.
    Biochemistry. 1998 Sep 1;37(35):12104-12 PMID: 9724522
  53. Mutations in RNA polymerase II and elongation factor SII severely reduce mRNA levels in Saccharomyces cerevisiae.
    Mol Cell Biol. 1998 Oct;18(10):5771-9 PMID: 9742094
  54. Functional organization of the yeast SAGA complex: distinct components involved in structural integrity, nucleosome acetylation, and TATA-binding protein interaction.
    Mol Cell Biol. 1999 Jan;19(1):86-98 PMID: 9858534
  55. The Spt components of SAGA facilitate TBP binding to a promoter at a post-activator-binding step in vivo.
    Genes Dev. 1999 Nov 15;13(22):2940-5 PMID: 10580001
  56. GAL11 protein, an auxiliary transcription activator for genes encoding galactose-metabolizing enzymes in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Nov;8(11):4991-9 PMID: 3062377
  57. GAL4 is regulated by the RNA polymerase II holoenzyme-associated cyclin-dependent protein kinase SRB10/CDK8.
    Mol Cell. 1999 May;3(5):673-8 PMID: 10360183
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
2005-04-00
Pages
2650-9
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC1061654
Subset
IM
Grants
NIGMS NIH HHS · R01 GM045720 · United States
NIGMS NIH HHS · GM45720 · United States
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