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PMID: 15608217 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

CYGD: the Comprehensive Yeast Genome Database.

Nucleic acids research ·Vol. 33 ·No. Database issue ·2005-01-01 ·Pages D364-8

Güldener U, Münsterkötter M, Kastenmüller G, Strack N, van Helden J, Lemer C, Richelles J, Wodak SJ, García-Martínez J, Pérez-Ortín JE, Michael H, Kaps A, Talla E, Dujon B, André B, Souciet JL, De Montigny J, Bon E, Gaillardin C, Mewes HW

Abstract

The Comprehensive Yeast Genome Database (CYGD) compiles a comprehensive data resource for information on the cellular functions of the yeast Saccharomyces cerevisiae and related species, chosen as the best understood model organism for eukaryotes. The database serves as a common resource generated by a European consortium, going beyond the provision of sequence information and functional annotations on individual genes and proteins. In addition, it provides information on the physical and functional interactions among proteins as well as other genetic elements. These cellular networks include metabolic and regulatory pathways, signal transduction and transport processes as well as co-regulated gene clusters. As more yeast genomes are published, their annotation becomes greatly facilitated using S.cerevisiae as a reference. CYGD provides a way of exploring related genomes with the aid of the S.cerevisiae genome as a backbone and SIMAP, the Similarity Matrix of Proteins. The comprehensive resource is available under http://mips.gsf.de/genre/proj/yeast/.

MeSH Terms
Binding Sites Databases, Genetic Genome, Fungal Genomics Membrane Proteins/analysis Membrane Transport Proteins/analysis,metabolism Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins/chemistry,genetics,metabolism Sequence Analysis, Protein Transcription Factors/metabolism User-Computer Interface
Chemicals
Membrane Proteins Membrane Transport Proteins Saccharomyces cerevisiae Proteins Transcription Factors
Authors & Affiliations
20 authors, click to expand affiliations / ORCID
Güldener U
Institute for Bioinformatics, GSF National Research Center for Environment and Health, Ingolstädter Landstrasse 1, D-85764 Neuherberg, Germany.
Münsterkötter M
Kastenmüller G
Strack N
van Helden J
Lemer C
Richelles J
Wodak S J
García-Martínez J
Pérez-Ortín J E
Michael H
Kaps A
Talla E
Dujon B
André B
Souciet J L
De Montigny J
Bon E
Gaillardin C
Mewes H W
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gki053
Published
2005-01-01
Pages
D364-8
Language
English
Region
England
NLM ID
0411011
PMCID
PMC540007
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gki053 PMC Full Text View journal details
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