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PMID: 15372075 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

SWI/SNF remodeling and p300-dependent transcription of histone variant H2ABbd nucleosomal arrays.

The EMBO journal ·Vol. 23 ·No. 19 ·2004-10-01 ·Pages 3815-24

Angelov D, Verdel A, An W, Bondarenko V, Hans F, Doyen CM, Studitsky VM, Hamiche A, Roeder RG, Bouvet P, Dimitrov S

Abstract

A histone variant H2ABbd was recently identified, but its function is totally unknown. Here we have studied the structural and functional properties of nucleosome and nucleosomal arrays reconstituted with this histone variant. We show that H2ABbd can replace the conventional H2A in the nucleosome, but this replacement results in alterations of the nucleosomal structure. The remodeling complexes SWI/SNF and ACF are unable to mobilize the variant H2ABbd nucleosome. However, SWI/SNF was able to increase restriction enzyme access to the variant nucleosome and assist the transfer of variant H2ABbd-H2B dimer to a tetrameric histone H3-H4 particle. In addition, the p300- and Gal4-VP16-activated transcription appeared to be more efficient for H2ABbd nucleosomal arrays than for conventional H2A arrays. The intriguing mechanisms by which H2ABbd affects both nucleosome remodeling and transcription are discussed.

MeSH Terms
Acetylation Animals Chromatin Assembly and Disassembly/genetics,physiology Chromosomal Proteins, Non-Histone/physiology DNA Footprinting Deoxyribonuclease I Dimerization Histones/metabolism Nuclear Proteins/physiology Nucleosomes/metabolism RNA, Ribosomal, 5S/chemistry Trans-Activators/physiology Transcription Factors/physiology Transcription, Genetic Xenopus/physiology
Chemicals
Chromosomal Proteins, Non-Histone Gal-VP16 Histones Nuclear Proteins Nucleosomes RNA, Ribosomal, 5S SWI-SNF-B chromatin-remodeling complex Trans-Activators Transcription Factors Deoxyribonuclease I
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Angelov Dimitar
Ecole Normale Supérieure de Lyon, CNRS-UMR 5161, Lyon, France.
Verdel André
An Woojin
Bondarenko Vladimir
Hans Fabienne
Doyen Cécile-Marie
Studitsky Vassily M
Hamiche Ali
Roeder Robert G
Bouvet Philippe
Dimitrov Stefan
References (34)
34 references, click to expand
  1. The language of covalent histone modifications.
    Nature. 2000 Jan 6;403(6765):41-5 PMID: 10638745
  2. Nucleosome movement by CHRAC and ISWI without disruption or trans-displacement of the histone octamer.
    Cell. 1999 Jun 25;97(7):843-52 PMID: 10399913
  3. Expression and purification of recombinant histones and nucleosome reconstitution.
    Methods Mol Biol. 1999;119:1-16 PMID: 10804500
  4. A chromatin remodelling complex involved in transcription and DNA processing.
    Nature. 2000 Aug 3;406(6795):541-4 PMID: 10952318
  5. Histone H2A.Z regulats transcription and is partially redundant with nucleosome remodeling complexes.
    Cell. 2000 Oct 27;103(3):411-22 PMID: 11081628
  6. Higher concentrations of histone macroH2A in the Barr body are correlated with higher nucleosome density.
    Curr Biol. 2000 Nov 30;10(23):1531-4 PMID: 11114523
  7. A histone variant, Htz1p, and a Sir1p-like protein, Esc2p, mediate silencing at HMR.
    Mol Cell. 2000 Oct;6(4):769-80 PMID: 11090616
  8. A novel chromatin protein, distantly related to histone H2A, is largely excluded from the inactive X chromosome.
    J Cell Biol. 2001 Jan 22;152(2):375-84 PMID: 11266453
  9. The interactions of yeast SWI/SNF and RSC with the nucleosome before and after chromatin remodeling.
    J Biol Chem. 2001 Apr 20;276(16):12636-44 PMID: 11304548
  10. ATP-dependent nucleosome remodeling and histone hyperacetylation synergistically facilitate transcription of chromatin.
    J Biol Chem. 2001 May 4;276(18):14773-83 PMID: 11279013
  11. Acf1, the largest subunit of CHRAC, regulates ISWI-induced nucleosome remodelling.
    EMBO J. 2001 Jul 16;20(14):3781-8 PMID: 11447119
  12. pEg2 aurora-A kinase, histone H3 phosphorylation, and chromosome assembly in Xenopus egg extract.
    J Biol Chem. 2001 Aug 10;276(32):30002-10 PMID: 11402032
  13. Nucleosome mobilization and positioning by ISWI-containing chromatin-remodeling factors.
    J Cell Sci. 2001 Jul;114(Pt 14):2561-8 PMID: 11683384
  14. Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription.
    Mol Cell. 2002 Mar;9(3):541-52 PMID: 11931762
  15. Selective requirements for histone H3 and H4 N termini in p300-dependent transcriptional activation from chromatin.
    Mol Cell. 2002 Apr;9(4):811-21 PMID: 11983172
  16. The histone variant H3.3 marks active chromatin by replication-independent nucleosome assembly.
    Mol Cell. 2002 Jun;9(6):1191-200 PMID: 12086617
  17. Nucleosome sliding: facts and fiction.
    EMBO J. 2002 Sep 16;21(18):4749-53 PMID: 12234915
  18. The histone variant macroH2A interferes with transcription factor binding and SWI/SNF nucleosome remodeling.
    Mol Cell. 2003 Apr;11(4):1033-41 PMID: 12718888
  19. H2AX haploinsufficiency modifies genomic stability and tumor susceptibility.
    Cell. 2003 Aug 8;114(3):371-83 PMID: 12914701
  20. Phylogenomics of the nucleosome.
    Nat Struct Biol. 2003 Nov;10(11):882-91 PMID: 14583738
  21. Histone H2A/H2B dimer exchange by ATP-dependent chromatin remodeling activities.
    Mol Cell. 2003 Dec;12(6):1599-606 PMID: 14690611
  22. ATP-driven exchange of histone H2AZ variant catalyzed by SWR1 chromatin remodeling complex.
    Science. 2004 Jan 16;303(5656):343-8 PMID: 14645854
  23. Topography of the ISW2-nucleosome complex: insights into nucleosome spacing and chromatin remodeling.
    EMBO J. 2004 May 19;23(10):2092-104 PMID: 15131696
  24. In vitro reconstitution and analysis of mononucleosomes containing defined DNAs and proteins.
    Methods. 1997 May;12(1):2-9 PMID: 9169189
  25. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor.
    Cell. 1997 Jul 11;90(1):145-55 PMID: 9230310
  26. Transcription factor access to chromatin.
    Nucleic Acids Res. 1997 Sep 15;25(18):3559-63 PMID: 9278473
  27. p300 and estrogen receptor cooperatively activate transcription via differential enhancement of initiation and reinitiation.
    Genes Dev. 1998 Feb 1;12(3):331-42 PMID: 9450928
  28. New DNA sequence rules for high affinity binding to histone octamer and sequence-directed nucleosome positioning.
    J Mol Biol. 1998 Feb 13;276(1):19-42 PMID: 9514715
  29. The acetyltransferase activity of CBP stimulates transcription.
    EMBO J. 1998 May 15;17(10):2886-93 PMID: 9582282
  30. Linker DNA and H1-dependent reorganization of histone-DNA interactions within the nucleosome.
    Biochemistry. 1998 Jun 16;37(24):8622-8 PMID: 9628723
  31. Functionally relevant histone-DNA interactions extend beyond the classically defined nucleosome core region.
    J Biol Chem. 1998 Aug 14;273(33):21352-8 PMID: 9694896
  32. Persistent interactions of core histone tails with nucleosomal DNA following acetylation and transcription factor binding.
    Mol Cell Biol. 1998 Nov;18(11):6293-304 PMID: 9774646
  33. ACF consists of two subunits, Acf1 and ISWI, that function cooperatively in the ATP-dependent catalysis of chromatin assembly.
    Genes Dev. 1999 Jun 15;13(12):1529-39 PMID: 10385622
  34. Promoter targeting and chromatin remodeling by the SWI/SNF complex.
    Curr Opin Genet Dev. 2000 Apr;10(2):187-92 PMID: 10753786
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2004-10-01
Epub
2004-00-16
Pages
3815-24
Language
English
Region
England
NLM ID
8208664
PMCID
PMC522799
Subset
IM
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