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PMID: 15312778 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Characterization of the 3a protein of SARS-associated coronavirus in infected vero E6 cells and SARS patients.

Journal of molecular biology ·Vol. 341 ·No. 1 ·2004-07-30 ·Pages 271-9

Zeng R, Yang RF, Shi MD, Jiang MR, Xie YH, Ruan HQ, Jiang XS, Shi L, Zhou H, Zhang L, Wu XD, Lin Y, Ji YY, Xiong L, Jin Y, Dai EH, Wang XY, Si BY, Wang J, Wang HX, Wang CE, Gan YH, Li YC, Cao JT, Zuo JP, Shan SF, Xie E, Chen SH, Jiang ZQ, Zhang X, Wang Y, Pei G, Sun B, Wu JR

Abstract

Proteomics was used to identify a protein encoded by ORF 3a in a SARS-associated coronavirus (SARS-CoV). Immuno-blotting revealed that interchain disulfide bonds might be formed between this protein and the spike protein. ELISA indicated that sera from SARS patients have significant positive reactions with synthesized peptides derived from the 3a protein. These results are concordant with that of a spike protein-derived peptide. A tendency exists for co-mutation between the 3a protein and the spike protein of SARS-CoV isolates, suggesting that the function of the 3a protein correlates with the spike protein. Taken together, the 3a protein might be tightly correlated to the spike protein in the SARS-CoV functions. The 3a protein may serve as a new clinical marker or drug target for SARS treatment.

MeSH Terms
Animals Chlorocebus aethiops Disulfides/metabolism Humans Membrane Glycoproteins/metabolism Phylogeny Proteomics SARS Virus/chemistry,genetics,metabolism Sequence Analysis, Protein Spike Glycoprotein, Coronavirus Vero Cells Viral Envelope Proteins/metabolism Viral Proteins/chemistry,genetics,metabolism Viroporin Proteins
Chemicals
3a protein, SARS-CoV Disulfides Membrane Glycoproteins Spike Glycoprotein, Coronavirus Viral Envelope Proteins Viral Proteins Viroporin Proteins
Authors & Affiliations
34 authors, click to expand affiliations / ORCID
Zeng Rong
Research Center for Proteome Analysis, Key Lab of Proteomics, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yue-Yang Road, Shanghai 200031, China.
Yang Rui-Fu
Shi Mu-De
Jiang Man-Rong
Xie You-Hua
Ruan Hong-Qiang
Jiang Xiao-Sheng
Shi Lv
Zhou Hu
Zhang Lei
Wu Xiao-Dong
Lin Ying
Ji Yong-Yong
Xiong Lei
Jin Yan
Dai Er-Hei
Wang Xiao-Yi
Si Bin-Ying
Wang Jin
Wang Hong-Xia
Wang Cui-E
Gan Yong-Hua
Li Yu-Chuan
Cao Ju-Tian
Zuo Jiang-Ping
Shan Shi-Fang
Xie En
Chen Song-Hua
Jiang Zhi-Qin
Zhang Xi
Wang Yuan
Pei Gang
Sun Bing
Wu Jia-Rui
References (23)
23 references, click to expand
  1. Analysis of the adenovirus type 5 proteome by liquid chromatography and tandem mass spectrometry methods.
    J Proteome Res. 2002 Nov-Dec;1(6):501-13 PMID: 12645618
  2. Unique and conserved features of genome and proteome of SARS-coronavirus, an early split-off from the coronavirus group 2 lineage.
    J Mol Biol. 2003 Aug 29;331(5):991-1004 PMID: 12927536
  3. Pertussis toxin enhances Th1 responses by stimulation of dendritic cells.
    J Immunol. 2003 Feb 15;170(4):1728-36 PMID: 12574336
  4. Sequence analysis of the porcine epidemic diarrhea virus genome between the nucleocapsid and spike protein genes reveals a polymorphic ORF.
    Virology. 1994 Feb;198(2):466-76 PMID: 8291230
  5. Sequence comparison of porcine respiratory coronavirus isolates reveals heterogeneity in the S, 3, and 3-1 genes.
    J Virol. 1995 May;69(5):3176-84 PMID: 7707547
  6. Phylogeny of SARS-CoV as inferred from complete genome comparison.
    Chin Sci Bull. 2003;48(12):1175-1178 PMID: 32214702
  7. Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
    Protein Eng. 1997 Jan;10(1):1-6 PMID: 9051728
  8. Complete genomic sequence of the transmissible gastroenteritis virus.
    Adv Exp Med Biol. 1995;380:459-61 PMID: 8830524
  9. Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry.
    Nature. 1996 Feb 1;379(6564):466-9 PMID: 8559255
  10. Coronavirus-induced membrane fusion requires the cysteine-rich domain in the spike protein.
    Virology. 2000 Mar 30;269(1):212-24 PMID: 10725213
  11. Characterization of a novel coronavirus associated with severe acute respiratory syndrome.
    Science. 2003 May 30;300(5624):1394-9 PMID: 12730500
  12. Murine coronavirus membrane fusion is blocked by modification of thiols buried within the spike protein.
    J Virol. 1996 Jul;70(7):4683-90 PMID: 8676494
  13. Completion of the sequence of the genome of the coronavirus avian infectious bronchitis virus.
    J Gen Virol. 1987 Jan;68 ( Pt 1):57-77 PMID: 3027249
  14. The Genome sequence of the SARS-associated coronavirus.
    Science. 2003 May 30;300(5624):1399-404 PMID: 12730501
  15. Molecular analysis of the human coronavirus (strain 229E) genome.
    Arch Virol Suppl. 1993;7:63-74 PMID: 8219814
  16. Prediction of signal peptides and signal anchors by a hidden Markov model.
    Proc Int Conf Intell Syst Mol Biol. 1998;6:122-30 PMID: 9783217
  17. Characterisation of a recent virulent transmissible gastroenteritis virus from Britain with a deleted ORF 3a.
    Arch Virol. 1999;144(4):763-70 PMID: 10365166
  18. The complete sequence (22 kilobases) of murine coronavirus gene 1 encoding the putative proteases and RNA polymerase.
    Virology. 1991 Feb;180(2):567-82 PMID: 1846489
  19. Virology. The SARS coronavirus: a postgenomic era.
    Science. 2003 May 30;300(5624):1377-8 PMID: 12775826
  20. Genetic analysis of porcine respiratory coronavirus, an attenuated variant of transmissible gastroenteritis virus.
    J Virol. 1991 Jun;65(6):3369-73 PMID: 1851885
  21. Identification of an epitope of SARS-coronavirus nucleocapsid protein.
    Cell Res. 2003 Jun;13(3):141-5 PMID: 12862314
  22. SYFPEITHI: database for MHC ligands and peptide motifs.
    Immunogenetics. 1999 Nov;50(3-4):213-9 PMID: 10602881
  23. Pathogenicity and sequence analysis studies suggest potential role of gene 3 in virulence of swine enteric and respiratory coronaviruses.
    Adv Exp Med Biol. 1997;412:317-21 PMID: 9192036
Article Info
Journal
Journal of molecular biology
Abbr.
J Mol Biol
ISSN
0022-2836
Published
2004-07-30
Pages
271-9
Language
English
Region
England
NLM ID
2985088R
PMCID
PMC7127270
Subset
IM
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