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PMID: 14557537 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Evolution of the yeast protein interaction network.

Proceedings of the National Academy of Sciences of the United States of America ·Vol. 100 ·No. 22 ·2003-10-28 ·Pages 12820-4

Qin H, Lu HH, Wu WB, Li WH

Abstract

To study the evolution of the yeast protein interaction network, we first classified yeast proteins by their evolutionary histories into isotemporal categories, then analyzed the interaction tendencies within and between the categories, and finally reconstructed the main growth path. We found that two proteins tend to interact with each other if they are in the same or similar categories, but tended to avoid each other otherwise, and that network evolution mirrors the universal tree of life. These observations suggest synergistic selection during network evolution and provide insights into the hierarchical modularity of cellular networks.

MeSH Terms
Biological Evolution Databases, Genetic Fungi/classification Genome, Fungal Models, Biological Neural Networks, Computer Phylogeny Saccharomyces cerevisiae/genetics Saccharomyces cerevisiae Proteins/genetics
Chemicals
Saccharomyces cerevisiae Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Qin Hong
Department of Ecology and Evolution, University of Chicago, 1101 East 57th Street, Chicago, IL 60637, USA.
Lu Henry H S
Wu Wei B
Li Wen-Hsiung
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Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
DOI
10.1073/pnas.2235584100
Published
2003-10-28
Epub
2003-00-13
Pages
12820-4
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC240702
Subset
IM
Grants
NIGMS NIH HHS · GM 66104 · United States
NIGMS NIH HHS · R01 GM066104 · United States
NIGMS NIH HHS · GM 30998 · United States
NIGMS NIH HHS · R37 GM030998 · United States
NIGMS NIH HHS · R01 GM030998 · United States
External Links
PubMed source DOI: 10.1073/pnas.2235584100 PMC Full Text View journal details
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