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PMID: 12750463 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Saccharomyces cerevisiae chromatin-assembly factors that act during DNA replication function in the maintenance of genome stability.

Myung K, Pennaneach V, Kats ES, Kolodner RD

Abstract

Some spontaneous gross chromosomal rearrangements (GCRs) seem to result from DNA-replication errors. The chromatin-assembly factor I (CAF-I) and replication-coupling assembly factor (RCAF) complexes function in chromatin assembly during DNA replication and repair and could play a role in maintaining genome stability. Inactivation of CAF-I or RCAF increased the rate of accumulating different types of GCRs including translocations and deletion of chromosome arms with associated de novo telomere addition. Inactivation of CAF-I seems to cause damage that activates the DNA-damage checkpoints, whereas inactivation of RCAF seems to cause damage that activates the DNA-damage and replication checkpoints. Both defects result in increased genome instability that is normally suppressed by these checkpoints, RAD52-dependent recombination, and PIF1-dependent inhibition of de novo telomere addition. Treatment of CAF-I- or RCAF-defective cells with methyl methanesulfonate increased the induction of GCRs compared with that seen for a wild-type strain. These results indicate that coupling of chromatin assembly to DNA replication and DNA repair is critical to maintaining genome stability.

MeSH Terms
Chromatin Assembly Factor-1 Chromosomal Proteins, Non-Histone DNA Damage/genetics DNA Repair/genetics DNA Replication/physiology DNA-Binding Proteins/physiology Mutation Saccharomyces cerevisiae/genetics,metabolism Saccharomyces cerevisiae Proteins/physiology
Chemicals
Chromatin Assembly Factor-1 Chromosomal Proteins, Non-Histone DNA-Binding Proteins Saccharomyces cerevisiae Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Myung Kyungjae
Ludwig Institute for Cancer Research, Cancer Center and Department of Medicine, University of California at San Diego School of Medicine, La Jolla 92093, USA.
Pennaneach Vincent
Kats Ellen S
Kolodner Richard D
References (70)
70 references, click to expand
  1. Telomerase and the maintenance of chromosome ends.
    Curr Opin Cell Biol. 1999 Jun;11(3):318-24 PMID: 10395557
  2. Gross chromosomal rearrangements in Saccharomyces cerevisiae replication and recombination defective mutants.
    Nat Genet. 1999 Sep;23(1):81-5 PMID: 10471504
  3. Advances in the detection of chromosomal aberrations using spectral karyotyping.
    Clin Genet. 2001 Feb;59(2):65-73 PMID: 11260203
  4. Asf1 links Rad53 to control of chromatin assembly.
    Genes Dev. 2001 May 1;15(9):1061-6 PMID: 11331602
  5. Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing.
    Curr Biol. 2001 Apr 3;11(7):463-73 PMID: 11412995
  6. Multiple pathways cooperate in the suppression of genome instability in Saccharomyces cerevisiae.
    Nature. 2001 Jun 28;411(6841):1073-6 PMID: 11429610
  7. Histone deacetylase-dependent transcriptional repression by pRB in yeast occurs independently of interaction through the LXCXE binding cleft.
    Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8720-5 PMID: 11447271
  8. Telomere dysfunction increases mutation rate and genomic instability.
    Cell. 2001 Aug 10;106(3):275-86 PMID: 11509177
  9. Interaction between the Drosophila CAF-1 and ASF1 chromatin assembly factors.
    Mol Cell Biol. 2001 Oct;21(19):6574-84 PMID: 11533245
  10. Functional overlap between Sgs1-Top3 and the Mms4-Mus81 endonuclease.
    Genes Dev. 2001 Oct 15;15(20):2730-40 PMID: 11641278
  11. Systematic genetic analysis with ordered arrays of yeast deletion mutants.
    Science. 2001 Dec 14;294(5550):2364-8 PMID: 11743205
  12. Suppression of genome instability by redundant S-phase checkpoint pathways in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4500-7 PMID: 11917116
  13. Human Asf1 and CAF-1 interact and synergize in a repair-coupled nucleosome assembly pathway.
    EMBO Rep. 2002 Apr;3(4):329-34 PMID: 11897662
  14. Chromatin assembly. Cooperation between histone chaperones and ATP-dependent nucleosome remodeling machines.
    Eur J Biochem. 2002 May;269(9):2268-74 PMID: 11985607
  15. Convergence of the fanconi anemia and ataxia telangiectasia signaling pathways.
    Cell. 2002 May 17;109(4):459-72 PMID: 12086603
  16. Replication-dependent marking of DNA by PCNA facilitates CAF-1-coupled inheritance of chromatin.
    Cell. 1999 Feb 19;96(4):575-85 PMID: 10052459
  17. Eukaryotic DNA mismatch repair.
    Curr Opin Genet Dev. 1999 Feb;9(1):89-96 PMID: 10072354
  18. Mutations in RECQL4 cause a subset of cases of Rothmund-Thomson syndrome.
    Nat Genet. 1999 May;22(1):82-4 PMID: 10319867
  19. Chromatin assembly: biochemical identities and genetic redundancy.
    Curr Opin Genet Dev. 1999 Apr;9(2):185-90 PMID: 10322140
  20. Alu repeats and human disease.
    Mol Genet Metab. 1999 Jul;67(3):183-93 PMID: 10381326
  21. A general requirement for the Sin3-Rpd3 histone deacetylase complex in regulating silencing in Saccharomyces cerevisiae.
    Genetics. 1999 Jul;152(3):921-32 PMID: 10388812
  22. Biallelic inactivation of BRCA2 in Fanconi anemia.
    Science. 2002 Jul 26;297(5581):606-9 PMID: 12065746
  23. Maintenance of genome stability in Saccharomyces cerevisiae.
    Science. 2002 Jul 26;297(5581):552-7 PMID: 12142524
  24. Characterization of RAD51-independent break-induced replication that acts preferentially with short homologous sequences.
    Mol Cell Biol. 2002 Sep;22(18):6384-92 PMID: 12192038
  25. Coupling of DNA synthesis and histone synthesis in S phase independent of cyclin/cdk2 activity.
    Mol Cell Biol. 2002 Nov;22(21):7459-72 PMID: 12370293
  26. Involvement of RAD9-dependent damage checkpoint control in arrest of cell cycle, induction of cell death, and chromosome instability caused by defects in origin recognition complex in Saccharomyces cerevisiae.
    Eukaryot Cell. 2002 Apr;1(2):200-12 PMID: 12455955
  27. Induction of genome instability by DNA damage in Saccharomyces cerevisiae.
    DNA Repair (Amst). 2003 Mar 1;2(3):243-58 PMID: 12547388
  28. Direct kinase-to-kinase signaling mediated by the FHA phosphoprotein recognition domain of the Dun1 DNA damage checkpoint kinase.
    Mol Cell Biol. 2003 Feb;23(4):1441-52 PMID: 12556502
  29. Defective S phase chromatin assembly causes DNA damage, activation of the S phase checkpoint, and S phase arrest.
    Mol Cell. 2003 Feb;11(2):341-51 PMID: 12620223
  30. Identification of sequences in a yeast histone promoter involved in periodic transcription.
    Cell. 1986 May 23;45(4):537-44 PMID: 3518945
  31. Effects of histone H4 depletion on the cell cycle and transcription of Saccharomyces cerevisiae.
    EMBO J. 1988 Jul;7(7):2211-9 PMID: 3046933
  32. MSI1, a negative regulator of the RAS-cAMP pathway in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 1989 Nov;86(22):8778-82 PMID: 2554329
  33. Stepwise assembly of chromatin during DNA replication in vitro.
    EMBO J. 1991 Apr;10(4):971-80 PMID: 1849080
  34. Relationship of the cAMP-dependent protein kinase pathway to the SNF1 protein kinase and invertase expression in Saccharomyces cerevisiae.
    Genetics. 1992 Jan;130(1):71-80 PMID: 1310088
  35. The saccharomyces PIF1 DNA helicase inhibits telomere elongation and de novo telomere formation.
    Cell. 1994 Jan 14;76(1):145-55 PMID: 8287473
  36. A single ataxia telangiectasia gene with a product similar to PI-3 kinase.
    Science. 1995 Jun 23;268(5218):1749-53 PMID: 7792600
  37. TEL1, a gene involved in controlling telomere length in S. cerevisiae, is homologous to the human ataxia telangiectasia gene.
    Cell. 1995 Sep 8;82(5):823-9 PMID: 7671310
  38. The Bloom's syndrome gene product is homologous to RecQ helicases.
    Cell. 1995 Nov 17;83(4):655-66 PMID: 7585968
  39. Positional cloning of the Werner's syndrome gene.
    Science. 1996 Apr 12;272(5259):258-62 PMID: 8602509
  40. Biochemistry and genetics of eukaryotic mismatch repair.
    Genes Dev. 1996 Jun 15;10(12):1433-42 PMID: 8666228
  41. Chromatin assembly coupled to DNA repair: a new role for chromatin assembly factor I.
    Cell. 1996 Sep 20;86(6):887-96 PMID: 8808624
  42. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4.
    Cell. 1996 Oct 4;87(1):95-104 PMID: 8858152
  43. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I.
    Genes Dev. 1997 Feb 1;11(3):345-57 PMID: 9030687
  44. Two new S-phase-specific genes from Saccharomyces cerevisiae.
    Yeast. 1997 Sep 15;13(11):1029-42 PMID: 9290207
  45. Rad53-dependent phosphorylation of Swi6 and down-regulation of CLN1 and CLN2 transcription occur in response to DNA damage in Saccharomyces cerevisiae.
    Genes Dev. 1997 Nov 15;11(22):3032-45 PMID: 9367985
  46. Nibrin, a novel DNA double-strand break repair protein, is mutated in Nijmegen breakage syndrome.
    Cell. 1998 May 1;93(3):467-76 PMID: 9590180
  47. The hMre11/hRad50 protein complex and Nijmegen breakage syndrome: linkage of double-strand break repair to the cellular DNA damage response.
    Cell. 1998 May 1;93(3):477-86 PMID: 9590181
  48. Chromosomal rearrangements occur in S. cerevisiae rfa1 mutator mutants due to mutagenic lesions processed by double-strand-break repair.
    Mol Cell. 1998 Jul;2(1):9-22 PMID: 9702187
  49. Genetic disorders associated with cancer predisposition and genomic instability.
    Prog Nucleic Acid Res Mol Biol. 1999;63:189-221 PMID: 10506832
  50. The ins and outs of nucleosome assembly.
    Curr Opin Genet Dev. 2001 Apr;11(2):136-41 PMID: 11250135
  51. Recombinational repair of DNA damage in Escherichia coli and bacteriophage lambda.
    Microbiol Mol Biol Rev. 1999 Dec;63(4):751-813, table of contents PMID: 10585965
  52. The RCAF complex mediates chromatin assembly during DNA replication and repair.
    Nature. 1999 Dec 2;402(6761):555-60 PMID: 10591219
  53. The DNA double-strand break repair gene hMRE11 is mutated in individuals with an ataxia-telangiectasia-like disorder.
    Cell. 1999 Dec 10;99(6):577-87 PMID: 10612394
  54. Heterozygous germ line hCHK2 mutations in Li-Fraumeni syndrome.
    Science. 1999 Dec 24;286(5449):2528-31 PMID: 10617473
  55. The yeast Sgs1p helicase acts upstream of Rad53p in the DNA replication checkpoint and colocalizes with Rad53p in S-phase-specific foci.
    Genes Dev. 2000 Jan 1;14(1):81-96 PMID: 10640278
  56. A CAF-1-PCNA-mediated chromatin assembly pathway triggered by sensing DNA damage.
    Mol Cell Biol. 2000 Feb;20(4):1206-18 PMID: 10648606
  57. Replication fork arrest and DNA recombination.
    Trends Biochem Sci. 2000 Apr;25(4):173-8 PMID: 10754549
  58. Homologous recombination is responsible for cell death in the absence of the Sgs1 and Srs2 helicases.
    Nat Genet. 2000 Jun;25(2):192-4 PMID: 10835635
  59. Tying up loose ends: nonhomologous end-joining in Saccharomyces cerevisiae.
    Mutat Res. 2000 Jun 30;451(1-2):71-89 PMID: 10915866
  60. The DNA damage response: putting checkpoints in perspective.
    Nature. 2000 Nov 23;408(6811):433-9 PMID: 11100718
  61. Response to RAG-mediated VDJ cleavage by NBS1 and gamma-H2AX.
    Science. 2000 Dec 8;290(5498):1962-5 PMID: 11110662
  62. A role for Saccharomyces cerevisiae histone H2A in DNA repair.
    Nature. 2000 Dec 21-28;408(6815):1001-4 PMID: 11140636
  63. Dynamic interaction of DNA damage checkpoint protein Rad53 with chromatin assembly factor Asf1.
    Mol Cell. 2001 Jan;7(1):13-20 PMID: 11172707
  64. Spectral karyotyping suggests additional subsets of colorectal cancers characterized by pattern of chromosome rearrangement.
    Proc Natl Acad Sci U S A. 2001 Feb 27;98(5):2538-43 PMID: 11226274
  65. DNA double-strand breaks: signaling, repair and the cancer connection.
    Nat Genet. 2001 Mar;27(3):247-54 PMID: 11242102
  66. Suppression of spontaneous chromosomal rearrangements by S phase checkpoint functions in Saccharomyces cerevisiae.
    Cell. 2001 Feb 9;104(3):397-408 PMID: 11239397
  67. CAC3(MSI1) suppression of RAS2(G19V) is independent of chromatin assembly factor I and mediated by NPR1.
    Mol Cell Biol. 2001 Mar;21(5):1784-94 PMID: 11238915
  68. Genetic requirements for RAD51- and RAD54-independent break-induced replication repair of a chromosomal double-strand break.
    Mol Cell Biol. 2001 Mar;21(6):2048-56 PMID: 11238940
  69. Identification of high-copy disruptors of telomeric silencing in Saccharomyces cerevisiae.
    Genetics. 1998 Oct;150(2):613-32 PMID: 9755194
  70. Genetic instabilities in human cancers.
    Nature. 1998 Dec 17;396(6712):643-9 PMID: 9872311
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2003-05-27
Epub
2003-00-15
Pages
6640-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC164500
Subset
IM
Grants
NIGMS NIH HHS · R01 GM026017 · United States
NIGMS NIH HHS · R37 GM026017 · United States
NIGMS NIH HHS · GM26017 · United States
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