Abstract
Phot proteins (phototropins and homologs) are blue-light photoreceptors that control mechanical processes like phototropism, chloroplast relocation, or guard-cell opening in plants. Phot receptors consist of two flavin mononucleotide (FMN)-binding light, oxygen, or voltage (LOV) domains and a C-terminal serine/threonine kinase domain. We determined crystal structures of the LOV1 domain of Phot1 from the green alga Chlamydomonas reinhardtii in the dark and illuminated state to 1.9 A and 2.8 A resolution, respectively. The structure resembles that of LOV2 from Adiantum (Crosson, S. and K. Moffat. 2001. PROC: Natl. Acad. Sci. USA. 98:2995-3000). In the resting dark state of LOV1, the reactive Cys-57 is present in two conformations. Blue-light absorption causes formation of a proposed active signaling state that is characterized by a covalent bond between the flavin C4a and the thiol of Cys-57. There are differences around the FMN chromophore but no large overall conformational changes. Quantum chemical calculations based on the crystal structures revealed the electronic distribution in the active site during the photocycle. The results suggest trajectories for electrons, protons, and the active site cysteine and offer an interpretation of the reaction mechanism.
MeSH Terms
Amino Acid Sequence
Animals
Arabidopsis Proteins/chemistry,radiation effects
Chlamydomonas reinhardtii/chemistry
Computer Simulation
Crystallography/methods
Darkness
Light
Models, Molecular
Molecular Sequence Data
Phosphoproteins/chemistry,radiation effects
Protein Conformation
Protein Serine-Threonine Kinases
Protein Structure, Tertiary
Structure-Activity Relationship
Chemicals
Arabidopsis Proteins
Phosphoproteins
NPH1 protein, Arabidopsis
Protein Serine-Threonine Kinases
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Fedorov Roman
Max Planck Institut für Molekulare Physiologie, Abteilung Biophysikalische Chemie, 44227 Dortmund, Germany.
Schlichting Ilme
Hartmann Elisabeth
Domratcheva Tatjana
Fuhrmann Markus
Hegemann Peter
References (30)
30 references, click to expand
-
Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction.
Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):2995-3000
PMID: 11248020
-
Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.
Science. 1997 Dec 19;278(5346):2120-3
PMID: 9405347
-
The phytochromes, a family of red/far-red absorbing photoreceptors.
J Biol Chem. 2001 Apr 13;276(15):11453-6
PMID: 11279228
-
The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.
J Biol Chem. 2001 Sep 28;276(39):36493-500
PMID: 11443119
-
Structure of the detoxification catalyst mercuric ion reductase from Bacillus sp. strain RC607.
Nature. 1991 Jul 11;352(6331):168-72
PMID: 2067577
-
Phot1 and phot2 mediate blue light regulation of stomatal opening.
Nature. 2001 Dec 6;414(6864):656-60
PMID: 11740564
-
Phototropins: a new family of flavin-binding blue light receptors in plants.
Antioxid Redox Signal. 2001 Oct;3(5):775-88
PMID: 11761327
-
Use of a site-directed triple mutant to trap intermediates: demonstration that the flavin C(4a)-thiol adduct and reduced flavin are kinetically competent intermediates in mercuric ion reductase.
Biochemistry. 1990 Mar 20;29(11):2831-41
PMID: 2189497
-
Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch.
Plant Cell. 2002 May;14(5):1067-75
PMID: 12034897
-
An extensively modified version of MolScript that includes greatly enhanced coloring capabilities.
J Mol Graph Model. 1997 Apr;15(2):132-4, 112-3
PMID: 9385560
-
Structural changes in a cryo-cooled protein crystal owing to radiation damage.
Acta Crystallogr D Biol Crystallogr. 2000 Mar;56(Pt 3):328-41
PMID: 10713520
-
Phot-LOV1: photocycle of a blue-light receptor domain from the green alga Chlamydomonas reinhardtii.
Biophys J. 2003 Feb;84(2 Pt 1):1192-201
PMID: 12547798
-
The catalytic pathway of cytochrome p450cam at atomic resolution.
Science. 2000 Mar 3;287(5458):1615-22
PMID: 10698731
-
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21
PMID: 9757107
-
Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.
Science. 2001 Mar 16;291(5511):2138-41
PMID: 11251116
-
Blue light sensing in higher plants.
J Biol Chem. 2001 Apr 13;276(15):11457-60
PMID: 11279226
-
The catalytic pathway of horseradish peroxidase at high resolution.
Nature. 2002 May 23;417(6887):463-8
PMID: 12024218
-
A large scale structural analysis of cDNAs in a unicellular green alga, Chlamydomonas reinhardtii. I. Generation of 3433 non-redundant expressed sequence tags.
DNA Res. 1999 Dec 31;6(6):369-73
PMID: 10691129
-
Spectroscopic characterization of flavin mononucleotide bound to the LOV1 domain of Phot1 from Chlamydomonas reinhardtii.
Photochem Photobiol. 2002 May;75(5):479-87
PMID: 12017473
-
Photoreaction of the cysteine S-H group in the LOV2 domain of Adiantum phytochrome3.
J Am Chem Soc. 2002 Oct 9;124(40):11840-1
PMID: 12358514
-
PAS domain S-boxes in Archaea, Bacteria and sensors for oxygen and redox.
Trends Biochem Sci. 1997 Sep;22(9):331-3
PMID: 9301332
-
Raster3D Version 2.0. A program for photorealistic molecular graphics.
Acta Crystallogr D Biol Crystallogr. 1994 Nov 1;50(Pt 6):869-73
PMID: 15299354
-
Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism.
Science. 1998 Nov 27;282(5394):1698-701
PMID: 9831559
-
Phototropin-related NPL1 controls chloroplast relocation induced by blue light.
Nature. 2001 Apr 19;410(6831):952-4
PMID: 11309623
-
Vibrational spectroscopy of an algal Phot-LOV1 domain probes the molecular changes associated with blue-light reception.
Biophys J. 2003 Jan;84(1):466-74
PMID: 12524299
-
Implementation of molecular replacement in AMoRe.
Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1367-72
PMID: 11567147
-
Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.
Biochemistry. 2000 Aug 8;39(31):9401-10
PMID: 10924135
-
The 'fingerprint' that X-rays can leave on structures.
Structure. 2000 Mar 15;8(3):315-28
PMID: 10745008
-
PAS domains: internal sensors of oxygen, redox potential, and light.
Microbiol Mol Biol Rev. 1999 Jun;63(2):479-506
PMID: 10357859
-
LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide.
Proc Natl Acad Sci U S A. 1999 Jul 20;96(15):8779-83
PMID: 10411952