Home LiteratureArticle Details
PMID: 12034897 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Photoexcited structure of a plant photoreceptor domain reveals a light-driven molecular switch.

The Plant cell ·Vol. 14 ·No. 5 ·2002-05-00 ·Pages 1067-75

Crosson S, Moffat K

Abstract

The phototropins are flavoprotein kinases that control phototropic bending, light-induced chloroplast movement, and stomatal opening in plants. Two flavin mononucleotide binding light, oxygen, or voltage (LOV) domains are the sites for initial photochemistry in these blue light photoreceptors. We have determined the steady state, photoexcited crystal structure of a flavin-bound LOV domain. The structure reveals a unique photochemical switch in the flavin binding pocket in which the absorption of light drives the formation of a reversible covalent bond between a highly conserved Cys residue and the flavin cofactor. This provides a molecular picture of a cysteinyl-flavin covalent adduct, the presumed signaling species that leads to phototropin kinase activation and subsequent signal transduction. We identify closely related LOV domains in two eubacterial proteins that suggests the light-induced conformational change evident in this structure is an ancient biomolecular response to light, arising before the appearance of plants.

MeSH Terms
Amino Acid Sequence Biological Transport/radiation effects Chloroplasts/physiology,radiation effects Cryptochromes Drosophila Proteins Eye Proteins Flavin Mononucleotide/genetics,metabolism Flavoproteins/genetics,metabolism Light Membrane Potentials/physiology,radiation effects Molecular Sequence Data Oxygen/metabolism Photoreceptor Cells, Invertebrate Photosynthetic Reaction Center Complex Proteins/genetics,radiation effects Phototropism/radiation effects Plant Structures/physiology,radiation effects Receptors, G-Protein-Coupled Sequence Homology, Amino Acid Signal Transduction/radiation effects
Chemicals
Cryptochromes Drosophila Proteins Eye Proteins Flavoproteins Photosynthetic Reaction Center Complex Proteins Receptors, G-Protein-Coupled cry protein, Drosophila Flavin Mononucleotide Oxygen
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Crosson Sean
Department of Biochemistry and Molecular Biology, University of Chicago, Chicago, Illinois 60637, USA.
Moffat Keith
References (32)
32 references, click to expand
  1. Rapid automated molecular replacement by evolutionary search.
    Acta Crystallogr D Biol Crystallogr. 1999 Feb;55(Pt 2):484-91 PMID: 10089360
  2. PAS domains: internal sensors of oxygen, redox potential, and light.
    Microbiol Mol Biol Rev. 1999 Jun;63(2):479-506 PMID: 10357859
  3. LOV (light, oxygen, or voltage) domains of the blue-light photoreceptor phototropin (nph1): binding sites for the chromophore flavin mononucleotide.
    Proc Natl Acad Sci U S A. 1999 Jul 20;96(15):8779-83 PMID: 10411952
  4. Arabidopsis NPH3: A NPH1 photoreceptor-interacting protein essential for phototropism.
    Science. 1999 Oct 29;286(5441):961-4 PMID: 10542152
  5. Photochemical and mutational analysis of the FMN-binding domains of the plant blue light receptor, phototropin.
    Biochemistry. 2000 Aug 8;39(31):9401-10 PMID: 10924135
  6. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature. 2000 Dec 14;408(6814):796-815 PMID: 11130711
  7. Use of TLS parameters to model anisotropic displacements in macromolecular refinement.
    Acta Crystallogr D Biol Crystallogr. 2001 Jan;57(Pt 1):122-33 PMID: 11134934
  8. Choice of tracks, microtubules and/or actin filaments for chloroplast photo-movement is differentially controlled by phytochrome and a blue light receptor.
    J Cell Sci. 2001 Jan;114(Pt 2):269-79 PMID: 11148129
  9. New family of regulators in the environmental signaling pathway which activates the general stress transcription factor sigma(B) of Bacillus subtilis.
    J Bacteriol. 2001 Feb;183(4):1329-38 PMID: 11157946
  10. The PAS protein VIVID defines a clock-associated feedback loop that represses light input, modulates gating, and regulates clock resetting.
    Cell. 2001 Feb 9;104(3):453-64 PMID: 11239402
  11. Structure of a flavin-binding plant photoreceptor domain: insights into light-mediated signal transduction.
    Proc Natl Acad Sci U S A. 2001 Mar 13;98(6):2995-3000 PMID: 11248020
  12. Arabidopsis NPL1: a phototropin homolog controlling the chloroplast high-light avoidance response.
    Science. 2001 Mar 16;291(5511):2138-41 PMID: 11251116
  13. Complete genome sequence of Caulobacter crescentus.
    Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):4136-41 PMID: 11259647
  14. Dynamic coupling between the SH2 and SH3 domains of c-Src and Hck underlies their inactivation by C-terminal tyrosine phosphorylation.
    Cell. 2001 Apr 6;105(1):115-26 PMID: 11301007
  15. Phototropin-related NPL1 controls chloroplast relocation induced by blue light.
    Nature. 2001 Apr 19;410(6831):952-4 PMID: 11309623
  16. GUARD CELL SIGNAL TRANSDUCTION.
    Annu Rev Plant Physiol Plant Mol Biol. 2001 Jun;52:627-658 PMID: 11337411
  17. Arabidopsis nph1 and npl1: blue light receptors that mediate both phototropism and chloroplast relocation.
    Proc Natl Acad Sci U S A. 2001 Jun 5;98(12):6969-74 PMID: 11371609
  18. The photocycle of a flavin-binding domain of the blue light photoreceptor phototropin.
    J Biol Chem. 2001 Sep 28;276(39):36493-500 PMID: 11443119
  19. An optomechanical transducer in the blue light receptor phototropin from Avena sativa.
    Proc Natl Acad Sci U S A. 2001 Oct 23;98(22):12357-61 PMID: 11606742
  20. Time-resolved biochemical crystallography: a mechanistic perspective.
    Chem Rev. 2001 Jun;101(6):1569-81 PMID: 11709992
  21. Phot1 and phot2 mediate blue light regulation of stomatal opening.
    Nature. 2001 Dec 6;414(6864):656-60 PMID: 11740564
  22. Phototropic auxin redistribution in corn coleoptiles.
    Science. 1957 Aug 2;126(3266):210-2 PMID: 13454802
  23. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  24. Ribbons.
    Methods Enzymol. 1997;277:493-505 PMID: 18488321
  25. Use of a site-directed triple mutant to trap intermediates: demonstration that the flavin C(4a)-thiol adduct and reduced flavin are kinetically competent intermediates in mercuric ion reductase.
    Biochemistry. 1990 Mar 20;29(11):2831-41 PMID: 2189497
  26. Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-26 PMID: 27754618
  27. Atypical phytochrome gene structure in the green alga Mesotaenium caldariorum.
    Plant Mol Biol. 1995 Dec;29(6):1127-42 PMID: 8616213
  28. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  29. Arabidopsis NPH1: a protein kinase with a putative redox-sensing domain.
    Science. 1997 Dec 19;278(5346):2120-3 PMID: 9405347
  30. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  31. Arabidopsis NPH1: a flavoprotein with the properties of a photoreceptor for phototropism.
    Science. 1998 Nov 27;282(5394):1698-701 PMID: 9831559
  32. A phytochrome from the fern Adiantum with features of the putative photoreceptor NPH1.
    Proc Natl Acad Sci U S A. 1998 Dec 22;95(26):15826-30 PMID: 9861055
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2002-05-00
Pages
1067-75
Language
English
Region
England
NLM ID
9208688
PMCID
PMC150607
Subset
IM
Grants
NIGMS NIH HHS · GM36452 · United States
NCRR NIH HHS · P41 RR007707 · United States
NIGMS NIH HHS · R37 GM036452 · United States
NIGMS NIH HHS · R01 GM036452 · United States
NCRR NIH HHS · RR07707 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com