The Stanford Microarray Database: data access and quality assessment tools.

Nucleic acids research ·Vol. 31 ·No. 1 ·2003-01-01 ·Pages 94-6

Gollub J, Ball CA, Binkley G, Demeter J, Finkelstein DB, Hebert JM, Hernandez-Boussard T, Jin H, Kaloper M, Matese JC, Schroeder M, Brown PO, Botstein D, Sherlock G

Abstract

The Stanford Microarray Database (SMD; http://genome-www.stanford.edu/microarray/) serves as a microarray research database for Stanford investigators and their collaborators. In addition, SMD functions as a resource for the entire scientific community, by making freely available all of its source code and providing full public access to data published by SMD users, along with many tools to explore and analyze those data. SMD currently provides public access to data from 3500 microarrays, including data from 85 publications, and this total is increasing rapidly. In this article, we describe some of SMD's newer tools for accessing public data, assessing data quality and for data analysis.

MeSH Terms

Animals California Computer Graphics Databases, Genetic/standards Gene Expression Profiling Humans Information Storage and Retrieval Oligonucleotide Array Sequence Analysis Quality Control Software

Authors & Affiliations

14 authors, click to expand affiliations / ORCID

Gollub Jeremy

Department of Genetics, Center for Clinical Sciences Research, 269 Campus Drive, Room 2255b, Stanford University, Stanford, CA 94305-5163, USA.

Ball Catherine A

Binkley Gail

Demeter Janos

Finkelstein David B

Hebert Joan M

Hernandez-Boussard Tina

Jin Heng

Kaloper Miroslava

Matese John C

Schroeder Mark

Brown Patrick O

Botstein David

Sherlock Gavin

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10 references, click to expand

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Article Info

Journal

Nucleic acids research

Abbr.

Nucleic Acids Res

ISSN

1362-4962

DOI

10.1093/nar/gkg078

Published

2003-01-01

Pages

94-6

Language

English

Region

England

NLM ID

0411011

PMCID

PMC165525

Subset

External Links

PubMed source DOI: 10.1093/nar/gkg078 PMC Full Text View journal details

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