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PMID: 12475936 Published · ppublish English Journal Article

The structure of Escherichia coli BtuF and binding to its cognate ATP binding cassette transporter.

Borths EL, Locher KP, Lee AT, Rees DC

Abstract

Bacterial binding protein-dependent ATP binding cassette (ABC) transporters facilitate uptake of essential nutrients. The crystal structure of Escherichia coli BtuF, the protein that binds vitamin B12 and delivers it to the periplasmic surface of the ABC transporter BtuCD, reveals a bi-lobed fold resembling that of the ferrichrome binding protein FhuD. B12 is bound in the "base-on" conformation in a deep cleft formed at the interface between the two lobes of BtuF. A stable complex between BtuF and BtuCD (with the stoichiometry BtuC2D2F) is demonstrated to form in vitro and was modeled using the individual crystal structures. Two surface glutamates from BtuF may interact with arginine residues on the periplasmic surface of the BtuCD transporter. These glutamate and arginine residues are conserved among binding proteins and ABC transporters mediating iron and B12 uptake, suggesting that they may have a role in docking and the transmission of conformational changes.

MeSH Terms
ATP-Binding Cassette Transporters/chemistry,metabolism Amino Acid Sequence Binding Sites Escherichia coli Proteins/chemistry,metabolism Models, Molecular Molecular Sequence Data Periplasmic Binding Proteins/chemistry,metabolism Protein Conformation Vitamin B 12/metabolism
Chemicals
ATP-Binding Cassette Transporters BtuC peptide, E coli BtuD peptide, E coli Escherichia coli Proteins Periplasmic Binding Proteins btuF protein, E coli Vitamin B 12
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Borths Elizabeth L
Howard Hughes Medical Institute and Division of Chemistry and Chemical Engineering, Mail Code 114-96, California Institute of Technology, Pasadena, CA 91125, USA.
Locher Kaspar P
Lee Allen T
Rees Douglas C
References (29)
29 references, click to expand
  1. Automated MAD and MIR structure solution.
    Acta Crystallogr D Biol Crystallogr. 1999 Apr;55(Pt 4):849-61 PMID: 10089316
  2. Treponema pallidum TroA is a periplasmic zinc-binding protein with a helical backbone.
    Nat Struct Biol. 1999 Jul;6(7):628-33 PMID: 10404217
  3. A new class of cobalamin transport mutants (btuF) provides genetic evidence for a periplasmic binding protein in Salmonella typhimurium.
    J Bacteriol. 1999 Sep;181(17):5539-41 PMID: 10464235
  4. A new mode of B12 binding and the direct participation of a potassium ion in enzyme catalysis: X-ray structure of diol dehydratase.
    Structure. 1999 Aug 15;7(8):997-1008 PMID: 10467140
  5. Glutamate mutase from Clostridium cochlearium: the structure of a coenzyme B12-dependent enzyme provides new mechanistic insights.
    Structure. 1999 Aug 15;7(8):891-902 PMID: 10467146
  6. The structure of the ferric siderophore binding protein FhuD complexed with gallichrome.
    Nat Struct Biol. 2000 Apr;7(4):287-91 PMID: 10742172
  7. Trapping the transition state of an ATP-binding cassette transporter: evidence for a concerted mechanism of maltose transport.
    Proc Natl Acad Sci U S A. 2001 Feb 13;98(4):1525-30 PMID: 11171984
  8. ABC transporters: physiology, structure and mechanism--an overview.
    Res Microbiol. 2001 Apr-May;152(3-4):205-10 PMID: 11421269
  9. The human ATP-binding cassette (ABC) transporter superfamily.
    Genome Res. 2001 Jul;11(7):1156-66 PMID: 11435397
  10. Identification of the periplasmic cobalamin-binding protein BtuF of Escherichia coli.
    J Bacteriol. 2002 Feb;184(3):706-17 PMID: 11790740
  11. Mechanism of coupling of transport to hydrolysis in bacterial ATP-binding cassette transporters.
    J Bacteriol. 2002 Mar;184(5):1225-33 PMID: 11844750
  12. The crystal structure of class II ribonucleotide reductase reveals how an allosterically regulated monomer mimics a dimer.
    Nat Struct Biol. 2002 Apr;9(4):293-300 PMID: 11875520
  13. The crystal structure of Zn(II)-free Treponema pallidum TroA, a periplasmic metal-binding protein, reveals a closed conformation.
    J Bacteriol. 2002 Apr;184(8):2300-4 PMID: 11914363
  14. Structure of a cofactor-deficient nitrogenase MoFe protein.
    Science. 2002 Apr 12;296(5566):352-6 PMID: 11951047
  15. The E. coli BtuCD structure: a framework for ABC transporter architecture and mechanism.
    Science. 2002 May 10;296(5570):1091-8 PMID: 12004122
  16. Structural models for the metal centers in the nitrogenase molybdenum-iron protein.
    Science. 1992 Sep 18;257(5077):1677-82 PMID: 1529354
  17. The CCP4 suite: programs for protein crystallography.
    Acta Crystallogr D Biol Crystallogr. 1994 Sep 1;50(Pt 5):760-3 PMID: 15299374
  18. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  19. Processing of X-ray diffraction data collected in oscillation mode.
    Methods Enzymol. 1997;276:307-26 PMID: 27754618
  20. [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.
    Methods Enzymol. 1997;276:472-494 PMID: 27799110
  21. How a protein binds B12: A 3.0 A X-ray structure of B12-binding domains of methionine synthase.
    Science. 1994 Dec 9;266(5191):1669-74 PMID: 7992050
  22. Atomic structure and specificity of bacterial periplasmic receptors for active transport and chemotaxis: variation of common themes.
    Mol Microbiol. 1996 Apr;20(1):17-25 PMID: 8861200
  23. Residues in the alpha helix 7 of the bacterial maltose binding protein which are important in interactions with the Mal FGK2 complex.
    Protein Sci. 1997 Mar;6(3):628-36 PMID: 9070445
  24. Touring protein fold space with Dali/FSSP.
    Nucleic Acids Res. 1998 Jan 1;26(1):316-9 PMID: 9399863
  25. ATP-dependent ferric hydroxamate transport system in Escherichia coli: periplasmic FhuD interacts with a periplasmic and with a transmembrane/cytoplasmic region of the integral membrane protein FhuB, as revealed by competitive peptide mapping.
    Mol Microbiol. 1997 Dec;26(5):1109-23 PMID: 9426146
  26. Overview of bacterial ABC transporters.
    Methods Enzymol. 1998;292:3-20 PMID: 9711542
  27. Crystallography & NMR system: A new software suite for macromolecular structure determination.
    Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21 PMID: 9757107
  28. The crystal structure of pneumococcal surface antigen PsaA reveals a metal-binding site and a novel structure for a putative ABC-type binding protein.
    Structure. 1998 Dec 15;6(12):1553-61 PMID: 9862808
  29. Both lobes of the soluble receptor of the periplasmic histidine permease, an ABC transporter (traffic ATPase), interact with the membrane-bound complex. Effect of different ligands and consequences for the mechanism of action.
    J Biol Chem. 1999 Jan 8;274(2):739-47 PMID: 9873010
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2002-12-24
Epub
2002-00-10
Pages
16642-7
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC139197
Subset
IM
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