Home LiteratureArticle Details
PMID: 12414728 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Intron status and 3'-end formation control cotranscriptional export of mRNA.

Genes & development ·Vol. 16 ·No. 21 ·2002-11-01 ·Pages 2761-6

Lei EP, Silver PA

Abstract

Messenger RNA export factors are recruited to genes in a transcription-dependent manner. To ascertain the mechanism of this process, we show that RNA polymerase II transcription is sufficient to recruit the Saccharomyces cerevisiae hnRNP protein Npl3 to a gene independent of RNA sequence. In contrast, the cotranscriptional recruitment of the RNA-binding protein Yra1 is dependent on pre-mRNA processing. Yra1 associates with introns of intron-containing genes in a splicing-dependent manner. Conversely, Yra1 recruitment to genes without introns is not dependent on splicing. Finally, 3'-end formation is required for Yra1 recruitment to genes regardless of intron status.

MeSH Terms
Heterogeneous-Nuclear Ribonucleoproteins/genetics Introns/genetics Models, Molecular Nuclear Proteins/genetics RNA 3' End Processing/genetics RNA Splicing RNA, Fungal/genetics RNA, Messenger/chemistry,genetics RNA-Binding Proteins/genetics Saccharomyces cerevisiae/genetics Saccharomyces cerevisiae Proteins/genetics Transcription, Genetic
Chemicals
Heterogeneous-Nuclear Ribonucleoproteins Nuclear Proteins RNA, Fungal RNA, Messenger RNA-Binding Proteins Saccharomyces cerevisiae Proteins YRA1 protein, S cerevisiae
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Lei Elissa P
Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School and Dana-Farber Cancer Institute, Boston, Massachusetts 02115, USA.
Silver Pamela A
References (39)
39 references, click to expand
  1. Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.
    Mol Cell. 2002 May;9(5):1101-11 PMID: 12049745
  2. TREX is a conserved complex coupling transcription with messenger RNA export.
    Nature. 2002 May 16;417(6886):304-8 PMID: 11979277
  3. A protein that shuttles between the nucleus and the cytoplasm is an important mediator of RNA export.
    Genes Dev. 1996 May 15;10(10):1233-46 PMID: 8675010
  4. Role of polyadenylation in nucleocytoplasmic transport of mRNA.
    Mol Cell Biol. 1996 Apr;16(4):1534-42 PMID: 8657127
  5. Potential RNA binding proteins in Saccharomyces cerevisiae identified as suppressors of temperature-sensitive mutations in NPL3.
    Genetics. 1996 Jan;142(1):103-15 PMID: 8770588
  6. ALY, a context-dependent coactivator of LEF-1 and AML-1, is required for TCRalpha enhancer function.
    Genes Dev. 1997 Mar 1;11(5):640-53 PMID: 9119228
  7. Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA.
    Nature. 1997 Sep 25;389(6649):399-402 PMID: 9311784
  8. Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3'-end formation in yeast.
    Genes Dev. 1997 Oct 1;11(19):2545-56 PMID: 9334319
  9. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
    Yeast. 1998 Jul;14(10):953-61 PMID: 9717241
  10. Nuclear mRNA export requires complex formation between Mex67p and Mtr2p at the nuclear pores.
    Mol Cell Biol. 1998 Nov;18(11):6826-38 PMID: 9774696
  11. Uncoupling of the hnRNP Npl3p from mRNAs during the stress-induced block in mRNA export.
    Genes Dev. 1999 Aug 1;13(15):1994-2004 PMID: 10444597
  12. The yeast RNA gene products are essential for mRNA splicing in vitro.
    Cell. 1986 Dec 26;47(6):953-63 PMID: 3536128
  13. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  14. Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes.
    Nature. 1991 Feb 7;349(6309):487-93 PMID: 1992352
  15. Mature mRNA 3' end formation stimulates RNA export from the nucleus.
    EMBO J. 1991 Nov;10(11):3513-22 PMID: 1833188
  16. Characterization of nuclear polyadenylated RNA-binding proteins in Saccharomyces cerevisiae.
    J Cell Biol. 1994 Dec;127(5):1173-84 PMID: 7962083
  17. A yeast RNA-binding protein shuttles between the nucleus and the cytoplasm.
    Mol Cell Biol. 1994 Dec;14(12):8399-407 PMID: 7969175
  18. Development and application of an in vivo system to study yeast ribosomal RNA biogenesis and function.
    Yeast. 1995 Feb;11(2):145-56 PMID: 7732724
  19. A yeast protein that bidirectionally affects nucleocytoplasmic transport.
    J Cell Sci. 1995 Jan;108 ( Pt 1):265-72 PMID: 7738104
  20. Spatial consequences of defective processing of specific yeast mRNAs revealed by fluorescent in situ hybridization.
    RNA. 1995 Dec;1(10):1071-8 PMID: 8595562
  21. Splicing is required for rapid and efficient mRNA export in metazoans.
    Proc Natl Acad Sci U S A. 1999 Dec 21;96(26):14937-42 PMID: 10611316
  22. Yra1p, a conserved nuclear RNA-binding protein, interacts directly with Mex67p and is required for mRNA export.
    EMBO J. 2000 Feb 1;19(3):410-20 PMID: 10722314
  23. The protein Aly links pre-messenger-RNA splicing to nuclear export in metazoans.
    Nature. 2000 Sep 21;407(6802):401-5 PMID: 11014198
  24. The spliceosome deposits multiple proteins 20-24 nucleotides upstream of mRNA exon-exon junctions.
    EMBO J. 2000 Dec 15;19(24):6860-9 PMID: 11118221
  25. Identification and characterization of yUAP/Sub2p, a yeast homolog of the essential human pre-mRNA splicing factor hUAP56.
    Genes Dev. 2001 Jan 1;15(1):30-5 PMID: 11156602
  26. Multiple roles for the yeast SUB2/yUAP56 gene in splicing.
    Genes Dev. 2001 Jan 1;15(1):36-41 PMID: 11156603
  27. Deletion of MUD2, the yeast homolog of U2AF65, can bypass the requirement for sub2, an essential spliceosomal ATPase.
    Genes Dev. 2001 Jan 1;15(1):42-9 PMID: 11156604
  28. Pre-mRNA processing factors are required for nuclear export.
    RNA. 2000 Dec;6(12):1737-49 PMID: 11142374
  29. REF proteins mediate the export of spliced and unspliced mRNAs from the nucleus.
    Proc Natl Acad Sci U S A. 2001 Jan 30;98(3):1030-5 PMID: 11158589
  30. A block to mRNA nuclear export in S. cerevisiae leads to hyperadenylation of transcripts that accumulate at the site of transcription.
    Mol Cell. 2001 Apr;7(4):887-98 PMID: 11336711
  31. Messenger RNAs are recruited for nuclear export during transcription.
    Genes Dev. 2001 Jul 15;15(14):1771-82 PMID: 11459827
  32. The exon-exon junction complex provides a binding platform for factors involved in mRNA export and nonsense-mediated mRNA decay.
    EMBO J. 2001 Sep 3;20(17):4987-97 PMID: 11532962
  33. Quality control of mRNA 3'-end processing is linked to the nuclear exosome.
    Nature. 2001 Oct 4;413(6855):538-42 PMID: 11586364
  34. Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly.
    Nature. 2001 Oct 11;413(6856):644-7 PMID: 11675789
  35. Splicing factor Sub2p is required for nuclear mRNA export through its interaction with Yra1p.
    Nature. 2001 Oct 11;413(6856):648-52 PMID: 11675790
  36. Stimulatory effect of splicing factors on transcriptional elongation.
    Nature. 2001 Dec 20-27;414(6866):929-33 PMID: 11780068
  37. Protein and RNA export from the nucleus.
    Dev Cell. 2002 Mar;2(3):261-72 PMID: 11879632
  38. Integrating mRNA processing with transcription.
    Cell. 2002 Feb 22;108(4):501-12 PMID: 11909521
  39. The mRNA assembly line: transcription and processing machines in the same factory.
    Curr Opin Cell Biol. 2002 Jun;14(3):336-42 PMID: 12067656
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
2002-11-01
Pages
2761-6
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC187473
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com