Abstract
The three-dimensional structure of the N-terminal SH3 domain (residues 583-660) of murine Vav, which contains a tetra-proline sequence (Pro 607-Pro 610), was determined by NMR. The solution structure of the SH3 domain shows a typical SH3 fold, but it exists in two conformations due to cis-trans isomerization at the Gly614-Pro615 bond. The NMR structure of the P615G mutant, where Pro615 is replaced by glycine, reveals that the tetra-proline region is inserted into the RT-loop and binds to its own SH3 structure. The C-terminal SH3 domain of Grb2 specifically binds to the trans form of the N-terminal SH3 domain of Vav. The surface of Vav N-terminal SH3 which binds to Grb2 C-terminal SH3 was elucidated by chemical shift mapping experiments using NMR. The surface does not involve the tetra-proline region but involves the region comprising the n-src loop, the N-terminal and the C-terminal regions. This surface is located opposite to the tetra-proline containing region, consistent with that of our previous mutagenesis studies.
MeSH Terms
Adaptor Proteins, Signal Transducing
Amino Acid Sequence
Animals
Binding Sites
Cell Cycle Proteins
GRB2 Adaptor Protein
Isomerism
Mice
Molecular Sequence Data
Mutagenesis, Site-Directed
Nuclear Magnetic Resonance, Biomolecular
Protein Binding
Protein Conformation
Proteins/chemistry,metabolism
Proto-Oncogene Proteins/chemistry,genetics,metabolism
Proto-Oncogene Proteins c-vav
Solutions
src Homology Domains
Chemicals
Adaptor Proteins, Signal Transducing
Cell Cycle Proteins
GRB2 Adaptor Protein
Grb2 protein, mouse
Proteins
Proto-Oncogene Proteins
Proto-Oncogene Proteins c-vav
Solutions
Vav1 protein, mouse
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Ogura Kenji
Graduate School of Pharmaceutical Sciences, Hokkaido University, Sapporo, Japan.
Nagata Koji
Horiuchi Masataka
Ebisui Etsuko
Hasuda Tomoyo
Yuzawa Satoru
Nishida Motohiko
Hatanaka Hideki
Inagaki Fuyuhiko
References (27)
27 references, click to expand
-
The VAV family of signal transduction molecules.
Crit Rev Oncog. 1996;7(1-2):65-88
PMID: 9109498
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology.
J Biomol NMR. 1999 Mar;13(3):289-302
PMID: 10212987
-
SH3 domain-dependent interaction of the proto-oncogene product Vav with the focal contact protein zyxin.
Oncogene. 1996 Apr 4;12(7):1577-81
PMID: 8622875
-
Protein modules and signalling networks.
Nature. 1995 Feb 16;373(6515):573-80
PMID: 7531822
-
Crystal structure of the SH3 domain in human Fyn; comparison of the three-dimensional structures of SH3 domains in tyrosine kinases and spectrin.
EMBO J. 1993 Jul;12(7):2617-24
PMID: 7687536
-
Protein folding and association: insights from the interfacial and thermodynamic properties of hydrocarbons.
Proteins. 1991;11(4):281-96
PMID: 1758883
-
NMRPipe: a multidimensional spectral processing system based on UNIX pipes.
J Biomol NMR. 1995 Nov;6(3):277-93
PMID: 8520220
-
Proline isomerism in staphylococcal nuclease characterized by NMR and site-directed mutagenesis.
Nature. 1987 Sep 17-23;329(6136):266-8
PMID: 3627269
-
Novel recognition mode between Vav and Grb2 SH3 domains.
EMBO J. 2001 Jun 15;20(12):2995-3007
PMID: 11406576
-
Association of the vav proto-oncogene product with poly(rC)-specific RNA-binding proteins.
Mol Cell Biol. 1995 Mar;15(3):1324-32
PMID: 7862126
-
Binding of Vav to Grb2 through dimerization of Src homology 3 domains.
Proc Natl Acad Sci U S A. 1994 Dec 20;91(26):12629-33
PMID: 7809090
-
Structure of the regulatory domains of the Src-family tyrosine kinase Lck.
Nature. 1994 Apr 21;368(6473):764-9
PMID: 7512222
-
vav, a novel human oncogene derived from a locus ubiquitously expressed in hematopoietic cells.
EMBO J. 1989 Aug;8(8):2283-90
PMID: 2477241
-
The proline-rich region of Vav binds to Grb2 and Grb3-3.
Oncogene. 1995 Oct 19;11(8):1665-9
PMID: 7478592
-
Regulatory and signaling properties of the Vav family.
Mol Cell Biol. 2000 Mar;20(5):1461-77
PMID: 10669724
-
Vav links antigen-receptor signaling to the actin cytoskeleton.
Semin Immunol. 1998 Aug;10(4):317-27
PMID: 9695188
-
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Acta Crystallogr D Biol Crystallogr. 1998 Sep 1;54(Pt 5):905-21
PMID: 9757107
-
Backbone dynamics of proteins as studied by 15N inverse detected heteronuclear NMR spectroscopy: application to staphylococcal nuclease.
Biochemistry. 1989 Nov 14;28(23):8972-9
PMID: 2690953
-
Two binding orientations for peptides to the Src SH3 domain: development of a general model for SH3-ligand interactions.
Science. 1994 Nov 18;266(5188):1241-7
PMID: 7526465
-
The protein tyrosine kinase ZAP-70 can associate with the SH2 domain of proto-Vav.
J Biol Chem. 1994 Dec 23;269(51):32579-85
PMID: 7798261
-
A 4D HCCH-TOCSY experiment for assigning the side chain 1H and 13C resonances of proteins.
J Biomol NMR. 1992 Nov;2(6):655-9
PMID: 1283353
-
Functional rafts in cell membranes.
Nature. 1997 Jun 5;387(6633):569-72
PMID: 9177342
-
Solution structure and ligand-binding site of the carboxy-terminal SH3 domain of GRB2.
Structure. 1994 Nov 15;2(11):1029-40
PMID: 7881903
-
Tyrosine phosphorylation of vav proto-oncogene product containing SH2 domain and transcription factor motifs.
Nature. 1992 Mar 5;356(6364):71-4
PMID: 1531699
-
AQUA and PROCHECK-NMR: programs for checking the quality of protein structures solved by NMR.
J Biomol NMR. 1996 Dec;8(4):477-86
PMID: 9008363
-
p95vav associates with the nuclear protein Ku-70.
Mol Cell Biol. 1996 Jan;16(1):37-44
PMID: 8524317
-
Product of vav proto-oncogene defines a new class of tyrosine protein kinase substrates.
Nature. 1992 Mar 5;356(6364):68-71
PMID: 1311423