Home LiteratureArticle Details
PMID: 11782447 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

Chromatin assembly factor I and Hir proteins contribute to building functional kinetochores in S. cerevisiae.

Genes & development ·Vol. 16 ·No. 1 ·2002-01-01 ·Pages 85-100

Sharp JA, Franco AA, Osley MA, Kaufman PD

Abstract

Budding yeast centromeres are comprised of approximately 125-bp DNA sequences that direct formation of the kinetochore, a specialized chromatin structure that mediates spindle attachment to chromosomes. We report here a novel role for the histone deposition complex chromatin assembly factor I (CAF-I) in building centromeric chromatin. The contribution of CAF-I to kinetochore function overlaps that of the Hir proteins, which have also been implicated in nucleosome formation and heterochromatic gene silencing. cacDelta hirDelta double mutant cells lacking both CAF-I and Hir proteins are delayed in anaphase entry in a spindle assembly checkpoint-dependent manner. Further, cacDelta and hirDelta deletions together cause increased rates of chromosome missegregation, genetic synergies with mutations in kinetochore protein genes, and alterations in centromeric chromatin structure. Finally, CAF-I subunits and Hir1 are enriched at centromeres, indicating that these proteins make a direct contribution to centromeric chromatin structures.

MeSH Terms
Chromatin Assembly Factor-1 Chromosomal Proteins, Non-Histone Chromosome Segregation DNA-Binding Proteins/physiology Kinetochores/physiology Mitosis/physiology Mutation Nuclear Proteins/physiology Saccharomyces cerevisiae/physiology,ultrastructure
Chemicals
Chromatin Assembly Factor-1 Chromosomal Proteins, Non-Histone DNA-Binding Proteins Nuclear Proteins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Sharp Judith A
Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA.
Franco Alexa A
Osley Mary Ann
Kaufman Paul D
References (98)
98 references, click to expand
  1. Crystal structure of the nucleosome core particle at 2.8 A resolution.
    Nature. 1997 Sep 18;389(6648):251-60 PMID: 9305837
  2. Genetic and morphological approaches for the analysis of meiotic chromosomes in yeast.
    Methods Cell Biol. 1998;53:257-85 PMID: 9348512
  3. The yeast Cac1 protein is required for the stable inheritance of transcriptionally repressed chromatin at telomeres.
    Proc Natl Acad Sci U S A. 1997 Nov 25;94(24):13081-6 PMID: 9371803
  4. Budding yeast centromere composition and assembly as revealed by in vivo cross-linking.
    Genes Dev. 1997 Dec 15;11(24):3401-12 PMID: 9407032
  5. Molecular structure of a functional Drosophila centromere.
    Cell. 1997 Dec 26;91(7):1007-19 PMID: 9428523
  6. Transient inhibition of histone deacetylation alters the structural and functional imprint at fission yeast centromeres.
    Cell. 1997 Dec 26;91(7):1021-32 PMID: 9428524
  7. The case for epigenetic effects on centromere identity and function.
    Trends Genet. 1997 Dec;13(12):489-96 PMID: 9433139
  8. Chromatin assembly factor I contributes to the maintenance, but not the re-establishment, of silencing at the yeast silent mating loci.
    Genes Dev. 1998 Jan 15;12(2):219-32 PMID: 9436982
  9. Mutations of mitotic checkpoint genes in human cancers.
    Nature. 1998 Mar 19;392(6673):300-3 PMID: 9521327
  10. Yeast nuclei display prominent centromere clustering that is reduced in nondividing cells and in meiotic prophase.
    J Cell Biol. 1998 Apr 6;141(1):21-9 PMID: 9531545
  11. Centromeric chromatin and epigenetic effects in kinetochore assembly.
    Cell. 1998 May 1;93(3):313-6 PMID: 9590163
  12. A mutation in NPS1/STH1, an essential gene encoding a component of a novel chromatin-remodeling complex RSC, alters the chromatin structure of Saccharomyces cerevisiae centromeres.
    Nucleic Acids Res. 1998 Jul 1;26(13):3286-92 PMID: 9628931
  13. Yeast Ty1 retrotransposition is stimulated by a synergistic interaction between mutations in chromatin assembly factor I and histone regulatory proteins.
    Mol Cell Biol. 1998 Aug;18(8):4783-92 PMID: 9671488
  14. The spindle checkpoint.
    Curr Opin Genet Dev. 1999 Feb;9(1):69-75 PMID: 10072359
  15. The conserved protein kinase Ipl1 regulates microtubule binding to kinetochores in budding yeast.
    Genes Dev. 1999 Mar 1;13(5):532-44 PMID: 10072382
  16. A genetic screen for ribosomal DNA silencing defects identifies multiple DNA replication and chromatin-modulating factors.
    Mol Cell Biol. 1999 Apr;19(4):3184-97 PMID: 10082585
  17. Ctf19p: A novel kinetochore protein in Saccharomyces cerevisiae and a potential link between the kinetochore and mitotic spindle.
    J Cell Biol. 1999 Apr 5;145(1):15-28 PMID: 10189365
  18. Immunological analysis of yeast chromatin.
    Methods Enzymol. 1999;304:414-30 PMID: 10372374
  19. Cohesins bind to preferential sites along yeast chromosome III, with differential regulation along arms versus the centric region.
    Cell. 1999 Jul 23;98(2):249-59 PMID: 10428036
  20. Slk19p is a centromere protein that functions to stabilize mitotic spindles.
    J Cell Biol. 1999 Jul 26;146(2):415-25 PMID: 10427094
  21. Identification of cohesin association sites at centromeres and along chromosome arms.
    Cell. 1999 Sep 17;98(6):847-58 PMID: 10499801
  22. The centromeric sister chromatid cohesion site directs Mcd1p binding to adjacent sequences.
    Mol Cell. 1999 Sep;4(3):445-50 PMID: 10518226
  23. A solid foundation: functional specialization of centromeric chromatin.
    Curr Opin Genet Dev. 2001 Apr;11(2):182-8 PMID: 11250142
  24. Budding yeast chromosome structure and dynamics during mitosis.
    J Cell Biol. 2001 Mar 19;152(6):1255-66 PMID: 11257125
  25. Dimerization of the largest subunit of chromatin assembly factor 1: importance in vitro and during Xenopus early development.
    EMBO J. 2001 Apr 17;20(8):2015-27 PMID: 11296234
  26. Yeast ASF1 protein is required for cell cycle regulation of histone gene transcription.
    Genetics. 2001 Jun;158(2):587-96 PMID: 11404324
  27. Yeast histone deposition protein Asf1p requires Hir proteins and PCNA for heterochromatic silencing.
    Curr Biol. 2001 Apr 3;11(7):463-73 PMID: 11412995
  28. Molecular analysis of kinetochore-microtubule attachment in budding yeast.
    Cell. 2001 Jul 27;106(2):195-206 PMID: 11511347
  29. Hir proteins are required for position-dependent gene silencing in Saccharomyces cerevisiae in the absence of chromatin assembly factor I.
    Mol Cell Biol. 1998 Aug;18(8):4793-806 PMID: 9671489
  30. Core histones and HIRIP3, a novel histone-binding protein, directly interact with WD repeat protein HIRA.
    Mol Cell Biol. 1998 Sep;18(9):5546-56 PMID: 9710638
  31. Cse4p is a component of the core centromere of Saccharomyces cerevisiae.
    Cell. 1998 Sep 4;94(5):607-13 PMID: 9741625
  32. Recruitment of phosphorylated chromatin assembly factor 1 to chromatin after UV irradiation of human cells.
    J Cell Biol. 1998 Nov 2;143(3):563-75 PMID: 9813080
  33. Interactions between a nuclear transporter and a subset of nuclear pore complex proteins depend on Ran GTPase.
    Mol Cell Biol. 1999 Feb;19(2):1547-57 PMID: 9891088
  34. Role of Saccharomyces cerevisiae chromatin assembly factor-I in repair of ultraviolet radiation damage in vivo.
    Genetics. 1999 Feb;151(2):485-97 PMID: 9927445
  35. Fission yeast mutants that alleviate transcriptional silencing in centromeric flanking repeats and disrupt chromosome segregation.
    Genetics. 1999 Nov;153(3):1153-69 PMID: 10545449
  36. Heterochromatin dynamics in mouse cells: interaction between chromatin assembly factor 1 and HP1 proteins.
    Mol Cell. 1999 Oct;4(4):529-40 PMID: 10549285
  37. Components of the spindle-assembly checkpoint are essential in Caenorhabditis elegans.
    Nat Cell Biol. 1999 Dec;1(8):514-21 PMID: 10587648
  38. The RCAF complex mediates chromatin assembly during DNA replication and repair.
    Nature. 1999 Dec 2;402(6761):555-60 PMID: 10591219
  39. Duplication and maintenance of heterochromatin domains.
    J Cell Biol. 1999 Dec 13;147(6):1153-66 PMID: 10601331
  40. Pulling a single chromatin fiber reveals the forces that maintain its higher-order structure.
    Proc Natl Acad Sci U S A. 2000 Jan 4;97(1):127-32 PMID: 10618382
  41. Histone H2A is required for normal centromere function in Saccharomyces cerevisiae.
    EMBO J. 2000 Apr 3;19(7):1598-612 PMID: 10747028
  42. Establishing biorientation occurs with precocious separation of the sister kinetochores, but not the arms, in the early spindle of budding yeast.
    Cell. 2000 Mar 17;100(6):619-33 PMID: 10761928
  43. Centromere clustering is a major determinant of yeast interphase nuclear organization.
    J Cell Sci. 2000 Jun;113 ( Pt 11):1903-12 PMID: 10806101
  44. Acquisition and metastability of centromere identity and function: sequence analysis of a human neocentromere.
    Genome Res. 2000 Jun;10(6):725-8 PMID: 10854406
  45. Human centromere protein A (CENP-A) can replace histone H3 in nucleosome reconstitution in vitro.
    Proc Natl Acad Sci U S A. 2000 Jun 20;97(13):7266-71 PMID: 10840064
  46. Transient sister chromatid separation and elastic deformation of chromosomes during mitosis in budding yeast.
    Cell. 2000 Jun 23;101(7):763-75 PMID: 10892747
  47. Histone-histone interactions and centromere function.
    Mol Cell Biol. 2000 Aug;20(15):5700-11 PMID: 10891506
  48. Transcriptional silencing in fission yeast.
    J Cell Physiol. 2000 Sep;184(3):311-8 PMID: 10911361
  49. The N terminus of the centromere H3-like protein Cse4p performs an essential function distinct from that of the histone fold domain.
    Mol Cell Biol. 2000 Sep;20(18):7037-48 PMID: 10958698
  50. Exit from mitosis: spindle pole power.
    Cell. 2000 Aug 4;102(3):267-70 PMID: 10975516
  51. Mitotic spindle integrity and kinetochore function linked by the Duo1p/Dam1p complex.
    J Cell Biol. 2001 Jan 8;152(1):197-212 PMID: 11149931
  52. FASCIATA genes for chromatin assembly factor-1 in arabidopsis maintain the cellular organization of apical meristems.
    Cell. 2001 Jan 12;104(1):131-42 PMID: 11163246
  53. Nucleosomes positioned by ORC facilitate the initiation of DNA replication.
    Mol Cell. 2001 Jan;7(1):21-30 PMID: 11172708
  54. Dad1p, third component of the Duo1p/Dam1p complex involved in kinetochore function and mitotic spindle integrity.
    Mol Biol Cell. 2001 Sep;12(9):2601-13 PMID: 11553702
  55. Chromatin assembly factor I mutants defective for PCNA binding require Asf1/Hir proteins for silencing.
    Mol Cell Biol. 2002 Jan;22(2):614-25 PMID: 11756556
  56. Yeast centromere DNA is in a unique and highly ordered structure in chromosomes and small circular minichromosomes.
    Cell. 1982 Jun;29(2):305-17 PMID: 6288253
  57. Chromatin structure of altered yeast centromeres.
    Proc Natl Acad Sci U S A. 1988 Jan;85(1):175-9 PMID: 2829168
  58. Trans-acting regulatory mutations that alter transcription of Saccharomyces cerevisiae histone genes.
    Mol Cell Biol. 1987 Dec;7(12):4204-10 PMID: 3125420
  59. Extremely conserved histone H4 N terminus is dispensable for growth but essential for repressing the silent mating loci in yeast.
    Cell. 1988 Oct 7;55(1):27-39 PMID: 3048701
  60. Composite motifs and repeat symmetry in S. pombe centromeres: direct analysis by integration of NotI restriction sites.
    Cell. 1989 Jun 2;57(5):739-51 PMID: 2541922
  61. A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae.
    Genetics. 1989 May;122(1):19-27 PMID: 2659436
  62. Checkpoints: controls that ensure the order of cell cycle events.
    Science. 1989 Nov 3;246(4930):629-34 PMID: 2683079
  63. Nucleosome positioning can affect the function of a cis-acting DNA element in vivo.
    Nature. 1990 Jan 25;343(6256):387-9 PMID: 2405281
  64. Genetic analysis of histone H4: essential role of lysines subject to reversible acetylation.
    Science. 1990 Feb 16;247(4944):841-5 PMID: 2106160
  65. Nucleosome depletion alters the chromatin structure of Saccharomyces cerevisiae centromeres.
    Mol Cell Biol. 1990 Nov;10(11):5721-7 PMID: 2233714
  66. Vectors for constitutive and inducible gene expression in yeast.
    Methods Enzymol. 1991;194:389-98 PMID: 2005799
  67. Immunofluorescence methods for yeast.
    Methods Enzymol. 1991;194:565-602 PMID: 2005809
  68. Analysis of chromosome segregation in Saccharomyces cerevisiae.
    Methods Enzymol. 1991;194:749-73 PMID: 2005822
  69. Identification of DNA regions required for mitotic and meiotic functions within the centromere of Schizosaccharomyces pombe chromosome I.
    Mol Cell Biol. 1991 Apr;11(4):2206-15 PMID: 2005906
  70. Stepwise assembly of chromatin during DNA replication in vitro.
    EMBO J. 1991 Apr;10(4):971-80 PMID: 1849080
  71. Feedback control of mitosis in budding yeast.
    Cell. 1991 Aug 9;66(3):519-31 PMID: 1651172
  72. Identification of a new set of cell cycle-regulatory genes that regulate S-phase transcription of histone genes in Saccharomyces cerevisiae.
    Mol Cell Biol. 1992 Nov;12(11):5249-59 PMID: 1406694
  73. Evidence that SNF2/SWI2 and SNF5 activate transcription in yeast by altering chromatin structure.
    Genes Dev. 1992 Dec;6(12A):2288-98 PMID: 1459453
  74. NDC10: a gene involved in chromosome segregation in Saccharomyces cerevisiae.
    J Cell Biol. 1993 May;121(3):503-12 PMID: 8486732
  75. Identification of essential components of the S. cerevisiae kinetochore.
    Cell. 1993 May 21;73(4):761-74 PMID: 8500169
  76. Mitotic checkpoint genes in budding yeast and the dependence of mitosis on DNA replication and repair.
    Genes Dev. 1994 Mar 15;8(6):652-65 PMID: 7926756
  77. Anaphase onset in vertebrate somatic cells is controlled by a checkpoint that monitors sister kinetochore attachment to the spindle.
    J Cell Biol. 1994 Dec;127(5):1301-10 PMID: 7962091
  78. Mutations derepressing silent centromeric domains in fission yeast disrupt chromosome segregation.
    Genes Dev. 1995 Jan 15;9(2):218-33 PMID: 7851795
  79. Mitotic forces control a cell-cycle checkpoint.
    Nature. 1995 Feb 16;373(6515):630-2 PMID: 7854422
  80. Histone H3 and H4 N-termini interact with SIR3 and SIR4 proteins: a molecular model for the formation of heterochromatin in yeast.
    Cell. 1995 Feb 24;80(4):583-92 PMID: 7867066
  81. Position effect variegation and chromatin proteins.
    Bioessays. 1992 Sep;14(9):605-12 PMID: 1365916
  82. A mutation in CSE4, an essential gene encoding a novel chromatin-associated protein in yeast, causes chromosome nondisjunction and cell cycle arrest at mitosis.
    Genes Dev. 1995 Mar 1;9(5):573-86 PMID: 7698647
  83. The p150 and p60 subunits of chromatin assembly factor I: a molecular link between newly synthesized histones and DNA replication.
    Cell. 1995 Jun 30;81(7):1105-14 PMID: 7600578
  84. Chromatin assembly factor 1 (CAF-1) colocalizes with replication foci in HeLa cell nuclei.
    Exp Cell Res. 1995 Oct;220(2):304-11 PMID: 7556438
  85. Postreplicative chromatin assembly by Drosophila and human chromatin assembly factor 1.
    Mol Cell Biol. 1996 Mar;16(3):810-7 PMID: 8622682
  86. A novel histone H4 mutant defective in nuclear division and mitotic chromosome transmission.
    Mol Cell Biol. 1996 Mar;16(3):1017-26 PMID: 8622646
  87. Functional analysis of histones H2A and H2B in transcriptional repression in Saccharomyces cerevisiae.
    Mol Cell Biol. 1996 Jun;16(6):2545-53 PMID: 8649361
  88. Structure and function of kinetochores in budding yeast.
    Annu Rev Cell Dev Biol. 1995;11:471-95 PMID: 8689566
  89. Silencing and heritable domains of gene expression.
    Annu Rev Cell Dev Biol. 1995;11:519-48 PMID: 8689568
  90. Establishing genetic interactions by a synthetic dosage lethality phenotype.
    Genetics. 1996 May;143(1):95-102 PMID: 8722765
  91. The clustering of telomeres and colocalization with Rap1, Sir3, and Sir4 proteins in wild-type Saccharomyces cerevisiae.
    J Cell Biol. 1996 Sep;134(6):1349-63 PMID: 8830766
  92. Abnormal kinetochore structure activates the spindle assembly checkpoint in budding yeast.
    Mol Biol Cell. 1996 Aug;7(8):1195-208 PMID: 8856664
  93. Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/H4.
    Cell. 1996 Oct 4;87(1):95-104 PMID: 8858152
  94. HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription.
    Proc Natl Acad Sci U S A. 1996 Dec 10;93(25):14503-8 PMID: 8962081
  95. GFP tagging of budding yeast chromosomes reveals that protein-protein interactions can mediate sister chromatid cohesion.
    Curr Biol. 1996 Dec 1;6(12):1599-608 PMID: 8994824
  96. Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-I.
    Genes Dev. 1997 Feb 1;11(3):345-57 PMID: 9030687
  97. RLF2, a subunit of yeast chromatin assembly factor-I, is required for telomeric chromatin function in vivo.
    Genes Dev. 1997 Feb 1;11(3):358-70 PMID: 9030688
  98. Centromere position in budding yeast: evidence for anaphase A.
    Mol Biol Cell. 1997 Jun;8(6):957-72 PMID: 9201708
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
2002-01-01
Pages
85-100
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC155315
Subset
IM
Grants
NIGMS NIH HHS · R01 GM040118 · United States
NIGMS NIH HHS · R01 GM055712 · United States
NIGMS NIH HHS · 1 R01 GM55712 · United States
NIGMS NIH HHS · GM40118 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com