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PMID: 10535918 Published · ppublish English Journal Article

Targeting a SWI/SNF-related chromatin remodeling complex to the beta-globin promoter in erythroid cells.

Lee CH, Murphy MR, Lee JS, Chung JH

Abstract

Chromatin remodeling complexes such as the SWI/SNF complex make DNA accessible to transcription factors by disrupting nucleosomes. However, it is not known how such complexes are targeted to the promoter. For example, a SWI/SNF1-like chromatin remodeling complex erythroid Krüppel-like factor (EKLF) coactivator-remodeling complex 1 (E-RC1) disrupts the nucleosomes over the human beta-globin promoter in an EKLF-dependent manner. However, it is not known whether E-RC1 is targeted specifically to the beta-globin promoter or whether E-RC1 is randomly targeted, but its activity is evident only at the beta-globin promoter. Because E-RC1 cannot remodel chromatin over the beta-globin promoter without EKLF in vitro, it has been proposed that SWI/SNF1-like complexes such as E-RC1 are targeted specifically to the promoter by selectively interacting with promoter-associated transcription factors such as EKLF. In this report, we test this hypothesis in the cellular context by using the ProteIN POsition Identification with Nuclease Tail (PIN*POINT) assay. We find that the Brahma-related gene (BRG) 1 and BRG1-associated factor (BAF) 170 subunits of E-RC1 are both recruited near the transcription initiation site of the beta-globin promoter. On transiently transfected templates, both the locus control region and the EKLF-binding site are important for their recruitment to the beta-globin promoter in mouse erythroleukemia cells. When the beta-globin promoter was linked to the cytomegalovirus enhancer, the E-RC1 complex was not recruited, suggesting that recruitment of the E-RC1 complex is not a general property of enhancers.

MeSH Terms
Base Sequence Chromatin/chemistry,metabolism DNA Primers Erythrocytes/metabolism Globins/genetics Humans Promoter Regions, Genetic Transcription Factors/metabolism
Chemicals
Chromatin DNA Primers Transcription Factors Globins
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Lee C H
Molecular Hematology Branch, National Heart Lung and Blood Institute, National Institutes of Health, Bethesda, MD 20892-1654, USA.
Murphy M R
Lee J S
Chung J H
References (41)
41 references, click to expand
  1. Chromatin remodelling by the glucocorticoid receptor requires the BRG1 complex.
    Nature. 1998 May 7;393(6680):88-91 PMID: 9590696
  2. SWI-SNF complex participation in transcriptional activation at a step subsequent to activator binding.
    Mol Cell Biol. 1998 Apr;18(4):1774-82 PMID: 9528749
  3. Reduced beta-globin gene expression in adult mice containing deletions of locus control region 5' HS-2 or 5' HS-3.
    Ann N Y Acad Sci. 1998 Jun 30;850:45-53 PMID: 9668526
  4. Individual LCR hypersensitive sites cooperate to generate an open chromatin domain spanning the human beta-globin locus.
    Genes Cells. 1998 Jul;3(7):415-29 PMID: 9753424
  5. A SWI/SNF-related chromatin remodeling complex, E-RC1, is required for tissue-specific transcriptional regulation by EKLF in vitro.
    Cell. 1998 Oct 2;95(1):93-104 PMID: 9778250
  6. The beta-globin LCR is not necessary for an open chromatin structure or developmentally regulated transcription of the native mouse beta-globin locus.
    Mol Cell. 1998 Oct;2(4):447-55 PMID: 9809066
  7. The beta-globin promoter is important for recruitment of erythroid Krüppel-like factor to the locus control region in erythroid cells.
    Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10051-5 PMID: 10468560
  8. BRG1 contains a conserved domain of the SWI2/SNF2 family necessary for normal mitotic growth and transcription.
    Nature. 1993 Nov 11;366(6451):170-4 PMID: 8232556
  9. A multisubunit complex containing the SWI1/ADR6, SWI2/SNF2, SWI3, SNF5, and SNF6 gene products isolated from yeast.
    Proc Natl Acad Sci U S A. 1994 Mar 1;91(5):1950-4 PMID: 8127913
  10. Multiple elements in human beta-globin locus control region 5' HS 2 are involved in enhancer activity and position-independent, transgene expression.
    Nucleic Acids Res. 1994 Mar 25;22(6):1006-11 PMID: 8152905
  11. Stimulation of GAL4 derivative binding to nucleosomal DNA by the yeast SWI/SNF complex.
    Science. 1994 Jul 1;265(5168):53-60 PMID: 8016655
  12. The action of pancreas deoxyribonuclease I (deoxyribonucleate oligonucleotidohydrolase, EC-number 3.1.4.5.) on calf thymus nucleohistone.
    Arch Biochem Biophys. 1972 Apr;149(2):513-27 PMID: 4677242
  13. A comparison of the digestion of nuclei and chromatin by staphylococcal nuclease.
    Biochemistry. 1975 Jul;14(13):2915-20 PMID: 1148184
  14. Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells.
    Mol Cell Biol. 1982 Sep;2(9):1044-51 PMID: 6960240
  15. Powerful and versatile enhancer-promoter unit for mammalian expression vectors.
    Gene. 1986;45(1):101-5 PMID: 3023199
  16. A deletion of the human beta-globin locus activation region causes a major alteration in chromatin structure and replication across the entire beta-globin locus.
    Genes Dev. 1990 Oct;4(10):1637-49 PMID: 2249769
  17. Functional domains in Fok I restriction endonuclease.
    Proc Natl Acad Sci U S A. 1992 May 15;89(10):4275-9 PMID: 1584761
  18. Yeast SNF/SWI transcriptional activators and the SPT/SIN chromatin connection.
    Trends Genet. 1992 Nov;8(11):387-91 PMID: 1332230
  19. Chromatin structure and transcription.
    Annu Rev Cell Biol. 1992;8:563-87 PMID: 1335747
  20. Each hypersensitive site of the human beta-globin locus control region confers a different developmental pattern of expression on the globin genes.
    Genes Dev. 1993 Jan;7(1):106-13 PMID: 8422981
  21. Synthetic human beta-globin 5'HS2 constructs function as locus control regions only in multicopy transgene concatamers.
    EMBO J. 1993 Jan;12(1):127-34 PMID: 8428573
  22. A human homologue of Saccharomyces cerevisiae SNF2/SWI2 and Drosophila brm genes potentiates transcriptional activation by the glucocorticoid receptor.
    EMBO J. 1993 Nov;12(11):4279-90 PMID: 8223438
  23. ATP-dependent nucleosome disruption at a heat-shock promoter mediated by binding of GAGA transcription factor.
    Nature. 1994 Feb 10;367(6463):525-32 PMID: 8107823
  24. Nucleosome disruption and enhancement of activator binding by a human SW1/SNF complex.
    Nature. 1994 Aug 11;370(6489):477-81 PMID: 8047169
  25. Facilitated binding of TATA-binding protein to nucleosomal DNA.
    Nature. 1994 Aug 11;370(6489):481-5 PMID: 8047170
  26. Regulation of globin gene expression in erythroid cells.
    Eur J Biochem. 1995 Jul 15;231(2):271-81 PMID: 7635138
  27. Targeted deletion of 5'HS2 of the murine beta-globin LCR reveals that it is not essential for proper regulation of the beta-globin locus.
    Genes Dev. 1995 Sep 15;9(18):2203-13 PMID: 7557375
  28. Synergistic regulation of human beta-globin gene switching by locus control region elements HS3 and HS4.
    Genes Dev. 1995 Dec 15;9(24):3083-96 PMID: 8543153
  29. RNA polymerase II holoenzyme contains SWI/SNF regulators involved in chromatin remodeling.
    Cell. 1996 Jan 26;84(2):235-44 PMID: 8565069
  30. DNA-binding properties of the yeast SWI/SNF complex.
    Nature. 1996 Feb 29;379(6568):844-7 PMID: 8587611
  31. Repression and activation by multiprotein complexes that alter chromatin structure.
    Genes Dev. 1996 Apr 15;10(8):905-20 PMID: 8608939
  32. Effect of deletion of 5'HS3 or 5'HS2 of the human beta-globin locus control region on the developmental regulation of globin gene expression in beta-globin locus yeast artificial chromosome transgenic mice.
    Proc Natl Acad Sci U S A. 1996 Jun 25;93(13):6605-9 PMID: 8692864
  33. Chromatin unfolds.
    Cell. 1996 Jul 12;86(1):13-9 PMID: 8689680
  34. Regulation of beta-globin gene expression: straightening out the locus.
    Curr Opin Genet Dev. 1996 Aug;6(4):488-95 PMID: 8791532
  35. Diversity and specialization of mammalian SWI/SNF complexes.
    Genes Dev. 1996 Sep 1;10(17):2117-30 PMID: 8804307
  36. Heterochromatin effects on the frequency and duration of LCR-mediated gene transcription.
    Cell. 1996 Oct 4;87(1):105-14 PMID: 8858153
  37. Components of the human SWI/SNF complex are enriched in active chromatin and are associated with the nuclear matrix.
    J Cell Biol. 1997 Apr 21;137(2):263-74 PMID: 9128241
  38. ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor.
    Cell. 1997 Jul 11;90(1):145-55 PMID: 9230310
  39. Multiple TATA-binding factors come back into style.
    Cell. 1997 Oct 3;91(1):13-5 PMID: 9335330
  40. Studying the recruitment of Sp1 to the beta-globin promoter with an in vivo method: protein position identification with nuclease tail (PIN*POINT).
    Proc Natl Acad Sci U S A. 1998 Feb 3;95(3):969-74 PMID: 9448269
  41. Developmental specificity of the interaction between the locus control region and embryonic or fetal globin genes in transgenic mice with an HS3 core deletion.
    Mol Cell Biol. 1998 Jul;18(7):4188-96 PMID: 9632803
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
1999-10-26
Pages
12311-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC22913
Subset
IM
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