Home LiteratureArticle Details
PMID: 10090730 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Antagonism between RSF1 and SR proteins for both splice-site recognition in vitro and Drosophila development.

Genes & development ·Vol. 13 ·No. 6 ·1999-03-15 ·Pages 740-53

Labourier E, Bourbon HM, Gallouzi IE, Fostier M, Allemand E, Tazi J

Abstract

Specific recognition of splice sites within metazoan mRNA precursors (pre-mRNAs) is a potential stage for gene regulation by alternative splicing. Splicing factors of the SR protein family play a major role in this regulation, as they are required for early recognition of splice sites during spliceosome assembly. Here, we describe the characterization of RSF1, a splicing repressor isolated from Drosophila, that functionally antagonizes SR proteins. Like the latter, RSF1 comprises an amino-terminal RRM-type RNA-binding domain, whereas its carboxy-terminal part is enriched in glycine (G), arginine (R), and serine (S) residues (GRS domain). RSF1 induces a dose-sensitive inhibition of splicing for several reporter pre-mRNAs, an inhibition that occurs at the level of early splicing complexes formation. RSF1 interacts, through its GRS domain, with the RS domain of the SR protein SF2/ASF and prevents the latter from cooperating with the U1 small nuclear ribonucleoprotein particle (U1 snRNP) in binding pre-mRNA. Furthermore, overproduction of RSF 1 in the fly rescues several developmental defects caused by overexpression of the splicing activator SR protein B52/ SRp55. Therefore, RSF1 may correspond to the prototypical member of a novel family of general splicing repressors that selectively antagonize the effect of SR proteins on 5' splice-site recognition.

MeSH Terms
Animals Base Sequence Binding, Competitive DNA Primers Drosophila/embryology Proteins/metabolism RNA Splicing Ribonucleoprotein, U1 Small Nuclear/metabolism
Chemicals
DNA Primers Proteins Ribonucleoprotein, U1 Small Nuclear
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Labourier E
Institut de Génétique Moléculaire, Centre National de la Recherche Scientifique (CNRS), F34293 Montpellier Cedex 5, France.
Bourbon H M
Gallouzi I E
Fostier M
Allemand E
Tazi J
References (79)
79 references, click to expand
  1. Modulation of exon skipping and inclusion by heterogeneous nuclear ribonucleoprotein A1 and pre-mRNA splicing factor SF2/ASF.
    Mol Cell Biol. 1993 May;13(5):2993-3001 PMID: 8474457
  2. The cardiac troponin T alternative exon contains a novel purine-rich positive splicing element.
    Mol Cell Biol. 1993 Jun;13(6):3660-74 PMID: 8388541
  3. A functional association between the 5' and 3' splice site is established in the earliest prespliceosome complex (E) in mammals.
    Genes Dev. 1993 Jun;7(6):1008-20 PMID: 8504926
  4. cDNA cloning and expression of Rhodnius prolixus vitellogenin.
    Insect Biochem Mol Biol. 1993 Jun;23(4):457-65 PMID: 8508188
  5. A splicing enhancer complex controls alternative splicing of doublesex pre-mRNA.
    Cell. 1993 Jul 16;74(1):105-14 PMID: 8334698
  6. In vitro analysis of bovine growth hormone pre-mRNA alternative splicing. Involvement of exon sequences and trans-acting factor(s).
    J Biol Chem. 1993 Jul 25;268(21):15659-66 PMID: 8340391
  7. The developmentally-regulated Drosophila gene rox8 encodes an RRM-type RNA binding protein structurally related to human TIA-1-type nucleolysins.
    Nucleic Acids Res. 1993 Aug 11;21(16):3699-704 PMID: 8396236
  8. Functional analysis of pre-mRNA splicing factor SF2/ASF structural domains.
    EMBO J. 1993 Dec;12(12):4715-26 PMID: 8223480
  9. Functional domains of the human splicing factor ASF/SF2.
    EMBO J. 1993 Dec;12(12):4727-37 PMID: 8223481
  10. The Drosophila RNA-binding protein RBP1 is localized to transcriptionally active sites of chromosomes and shows a functional similarity to human splicing factor ASF/SF2.
    Genes Dev. 1992 Dec;6(12B):2569-79 PMID: 1340470
  11. Pathways for selection of 5' splice sites by U1 snRNPs and SF2/ASF.
    EMBO J. 1993 Sep;12(9):3607-17 PMID: 8253084
  12. A splicing enhancer in the human fibronectin alternate ED1 exon interacts with SR proteins and stimulates U2 snRNP binding.
    Genes Dev. 1993 Dec;7(12A):2405-17 PMID: 8253386
  13. Specific interactions between proteins implicated in splice site selection and regulated alternative splicing.
    Cell. 1993 Dec 17;75(6):1061-70 PMID: 8261509
  14. General splicing factor SF2/ASF promotes alternative splicing by binding to an exonic splicing enhancer.
    Genes Dev. 1993 Dec;7(12B):2598-608 PMID: 8276242
  15. Polypurine sequences within a downstream exon function as a splicing enhancer.
    Mol Cell Biol. 1994 Feb;14(2):1347-54 PMID: 8289812
  16. A purine-rich exon sequence enhances alternative splicing of bovine growth hormone pre-mRNA.
    J Biol Chem. 1994 Mar 4;269(9):6431-6 PMID: 8119993
  17. The role of specific protein-RNA and protein-protein interactions in positive and negative control of pre-mRNA splicing by Transformer 2.
    Cell. 1994 Feb 25;76(4):735-46 PMID: 8124712
  18. Protein-protein interactions and 5'-splice-site recognition in mammalian mRNA precursors.
    Nature. 1994 Mar 10;368(6467):119-24 PMID: 8139654
  19. A novel bipartite splicing enhancer modulates the differential processing of the human fibronectin EDA exon.
    Nucleic Acids Res. 1994 Mar 25;22(6):1018-22 PMID: 8152907
  20. Split genes and RNA splicing.
    Cell. 1994 Jun 17;77(6):805-15 PMID: 7516265
  21. Characterization and cloning of the human splicing factor 9G8: a novel 35 kDa factor of the serine/arginine protein family.
    EMBO J. 1994 Jun 1;13(11):2639-49 PMID: 8013463
  22. The concentration of B52, an essential splicing factor and regulator of splice site choice in vitro, is critical for Drosophila development.
    Mol Cell Biol. 1994 Aug;14(8):5360-70 PMID: 8035814
  23. Regulation of alternative splicing in vivo by overexpression of antagonistic splicing factors.
    Science. 1994 Sep 16;265(5179):1706-9 PMID: 8085156
  24. The SR protein B52/SRp55 is essential for Drosophila development.
    Mol Cell Biol. 1994 Nov;14(11):7499-506 PMID: 7935465
  25. SR proteins promote the first specific recognition of Pre-mRNA and are present together with the U1 small nuclear ribonucleoprotein particle in a general splicing enhancer complex.
    Mol Cell Biol. 1994 Nov;14(11):7670-82 PMID: 7935481
  26. Function of conserved domains of hnRNP A1 and other hnRNP A/B proteins.
    EMBO J. 1994 Nov 15;13(22):5483-95 PMID: 7957114
  27. Exon recognition in vertebrate splicing.
    J Biol Chem. 1995 Feb 10;270(6):2411-4 PMID: 7852296
  28. Synergistic interactions between two distinct elements of a regulated splicing enhancer.
    Genes Dev. 1995 Feb 1;9(3):284-93 PMID: 7867927
  29. Novel Drosophila melanogaster genes encoding RRM-type RNA-binding proteins identified by a degenerate PCR strategy.
    Gene. 1995 Mar 10;154(2):187-92 PMID: 7890163
  30. Multiple splicing signals control alternative intron retention of bovine growth hormone pre-mRNA.
    J Biol Chem. 1995 Mar 10;270(10):5346-52 PMID: 7890647
  31. Ectopic expression in Drosophila.
    Methods Cell Biol. 1994;44:635-54 PMID: 7707973
  32. Distinct functions of SR proteins in recruitment of U1 small nuclear ribonucleoprotein to alternative 5' splice sites.
    Proc Natl Acad Sci U S A. 1995 Mar 28;92(7):2642-6 PMID: 7708698
  33. Identification of positive and negative splicing regulatory elements within the terminal tat-rev exon of human immunodeficiency virus type 1.
    Mol Cell Biol. 1995 Aug;15(8):4597-605 PMID: 7623851
  34. A subset of SR proteins activates splicing of the cardiac troponin T alternative exon by direct interactions with an exonic enhancer.
    Mol Cell Biol. 1995 Sep;15(9):4898-907 PMID: 7651409
  35. U1 snRNP-ASF/SF2 interaction and 5' splice site recognition: characterization of required elements.
    Nucleic Acids Res. 1995 Aug 25;23(16):3260-7 PMID: 7667103
  36. The superfamily of arginine/serine-rich splicing factors.
    RNA. 1995 Sep;1(7):663-80 PMID: 7585252
  37. SR protein splicing factors interact with the Rous sarcoma virus negative regulator of splicing element.
    J Virol. 1996 Feb;70(2):1163-72 PMID: 8551577
  38. Inhibition by SR proteins of splicing of a regulated adenovirus pre-mRNA.
    Nature. 1996 Jun 6;381(6582):535-8 PMID: 8632829
  39. The splicing factor U2AF35 mediates critical protein-protein interactions in constitutive and enhancer-dependent splicing.
    Genes Dev. 1996 Jun 1;10(11):1356-68 PMID: 8647433
  40. SR proteins and splicing control.
    Genes Dev. 1996 Jul 1;10(13):1569-79 PMID: 8682289
  41. Initial splice-site recognition and pairing during pre-mRNA splicing.
    Curr Opin Genet Dev. 1996 Apr;6(2):215-20 PMID: 8722179
  42. Biochemistry and regulation of pre-mRNA splicing.
    Curr Opin Cell Biol. 1996 Jun;8(3):331-9 PMID: 8743883
  43. Assembly of specific SR protein complexes on distinct regulatory elements of the Drosophila doublesex splicing enhancer.
    Genes Dev. 1996 Aug 15;10(16):2089-101 PMID: 8769651
  44. The structure and function of proteins involved in mammalian pre-mRNA splicing.
    Annu Rev Biochem. 1996;65:367-409 PMID: 8811184
  45. Targeted disruption of an essential vertebrate gene: ASF/SF2 is required for cell viability.
    Genes Dev. 1996 Oct 15;10(20):2588-99 PMID: 8895660
  46. Reiterative use of the EGF receptor triggers differentiation of all cell types in the Drosophila eye.
    Cell. 1996 Nov 15;87(4):651-60 PMID: 8929534
  47. Regulation of pre-mRNA splicing in metazoa.
    Curr Opin Genet Dev. 1997 Apr;7(2):205-11 PMID: 9115432
  48. Novel exonic elements that modulate splicing of the human fibronectin EDA exon.
    J Biol Chem. 1997 Dec 26;272(52):33394-401 PMID: 9407134
  49. A short sequence within two purine-rich enhancers determines 5' splice site specificity.
    Mol Cell Biol. 1998 Jan;18(1):343-52 PMID: 9418881
  50. Mechanical devices of the spliceosome: motors, clocks, springs, and things.
    Cell. 1998 Feb 6;92(3):315-26 PMID: 9476892
  51. Interaction between the N-terminal domain of human DNA topoisomerase I and the arginine-serine domain of its substrate determines phosphorylation of SF2/ASF splicing factor.
    Nucleic Acids Res. 1998 Jun 15;26(12):2955-62 PMID: 9611241
  52. Identification of functional exonic splicing enhancer motifs recognized by individual SR proteins.
    Genes Dev. 1998 Jul 1;12(13):1998-2012 PMID: 9649504
  53. Arginine/serine-rich domains of SR proteins can function as activators of pre-mRNA splicing.
    Mol Cell. 1998 Apr;1(5):765-71 PMID: 9660960
  54. Genetic analysis of the SR protein ASF/SF2: interchangeability of RS domains and negative control of splicing.
    Genes Dev. 1998 Jul 15;12(14):2222-33 PMID: 9679066
  55. Transposition of cloned P elements into Drosophila germ line chromosomes.
    Science. 1982 Oct 22;218(4570):341-7 PMID: 6289435
  56. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei.
    Nucleic Acids Res. 1983 Mar 11;11(5):1475-89 PMID: 6828386
  57. Normal and mutant human beta-globin pre-mRNAs are faithfully and efficiently spliced in vitro.
    Cell. 1984 Apr;36(4):993-1005 PMID: 6323033
  58. A factor, U2AF, is required for U2 snRNP binding and splicing complex assembly.
    Cell. 1988 Jan 29;52(2):207-19 PMID: 2963698
  59. Single-step purification of polypeptides expressed in Escherichia coli as fusions with glutathione S-transferase.
    Gene. 1988 Jul 15;67(1):31-40 PMID: 3047011
  60. Identification, purification, and biochemical characterization of U2 small nuclear ribonucleoprotein auxiliary factor.
    Proc Natl Acad Sci U S A. 1989 Dec;86(23):9243-7 PMID: 2531895
  61. Control of retroviral RNA splicing through maintenance of suboptimal processing signals.
    Mol Cell Biol. 1990 Feb;10(2):696-704 PMID: 2153921
  62. A protein factor, ASF, controls cell-specific alternative splicing of SV40 early pre-mRNA in vitro.
    Cell. 1990 Jul 13;62(1):25-34 PMID: 2163768
  63. The essential pre-mRNA splicing factor SF2 influences 5' splice site selection by activating proximal sites.
    Cell. 1990 Jul 13;62(1):35-42 PMID: 2364434
  64. A differentially expressed murine RNA encoding a protein with similarities to two types of nucleic acid binding motifs.
    Nucleic Acids Res. 1991 Mar 25;19(6):1273-8 PMID: 2030943
  65. Primary structure of the human splicing factor ASF reveals similarities with Drosophila regulators.
    Cell. 1991 Jul 26;66(2):373-82 PMID: 1855257
  66. Functional expression of cloned human splicing factor SF2: homology to RNA-binding proteins, U1 70K, and Drosophila splicing regulators.
    Cell. 1991 Jul 26;66(2):383-94 PMID: 1830244
  67. Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin.
    Genes Dev. 1991 Sep;5(9):1611-21 PMID: 1885003
  68. A conserved family of nuclear phosphoproteins localized to sites of polymerase II transcription.
    J Cell Biol. 1991 Nov;115(3):587-96 PMID: 1717489
  69. An ATP-independent complex commits pre-mRNA to the mammalian spliceosome assembly pathway.
    Genes Dev. 1991 Dec;5(12B):2534-46 PMID: 1836445
  70. Regulation of alternative pre-mRNA splicing by hnRNP A1 and splicing factor SF2.
    Cell. 1992 Jan 24;68(2):365-75 PMID: 1531115
  71. Two members of a conserved family of nuclear phosphoproteins are involved in pre-mRNA splicing.
    Proc Natl Acad Sci U S A. 1992 Feb 15;89(4):1301-4 PMID: 1741384
  72. Cloning and domain structure of the mammalian splicing factor U2AF.
    Nature. 1992 Feb 13;355(6361):609-14 PMID: 1538748
  73. A potential splicing factor is encoded by the opposite strand of the trans-spliced c-myb exon.
    Proc Natl Acad Sci U S A. 1992 Apr 1;89(7):2511-5 PMID: 1557353
  74. Biochemical mechanisms of constitutive and regulated pre-mRNA splicing.
    Annu Rev Cell Biol. 1991;7:559-99 PMID: 1839712
  75. SR proteins: a conserved family of pre-mRNA splicing factors.
    Genes Dev. 1992 May;6(5):837-47 PMID: 1577277
  76. The Drosophila melanogaster ribosomal protein L17A-encoding gene.
    Gene. 1992 Sep 10;118(2):273-8 PMID: 1511900
  77. The spliceosome assembly pathway in mammalian extracts.
    Mol Cell Biol. 1992 Oct;12(10):4279-87 PMID: 1383687
  78. The role of exon sequences in splice site selection.
    Genes Dev. 1993 Mar;7(3):407-18 PMID: 8449402
  79. Distinct functions of SR proteins in alternative pre-mRNA splicing.
    Science. 1993 Apr 9;260(5105):219-22 PMID: 8385799
Article Info
Journal
Genes & development
Abbr.
Genes Dev
ISSN
0890-9369
Published
1999-03-15
Pages
740-53
Language
English
Region
United States
NLM ID
8711660
PMCID
PMC316549
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com