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PMID: 100608 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

Genome-linked protein associated with the 5' termini of bacteriophage phi29 DNA.

Journal of virology ·Vol. 27 ·No. 3 ·1978-09-00 ·Pages 776-83

Yehle CO

Abstract

A DNA-protein complex was isolated from Bacillus subtilis bacteriophage phi29 by sucrose gradient sedimentation or gel filtration in the presence of agents known to break noncovalent bonds. A 28,000-dalton protein was released from this complex by subsequent hydrolysis of the DNA. The DNA-protein complex was examined for its susceptibility to enzymes which act upon the 5' and 3' termini of DNA molecules. It was susceptible to exonucleolytic degradation from the 3' termini by exonuclease III but not from the 5' termini by lambda exonuclease. Attempts to label radioactively the 5' termini by phosphorylation with T4 polynucleotide kinase were unsuccessful despite prior treatment with alkaline phosphatase or phosphatase treatment of denatured DNA. Removal of the majority of the bound protein by proteolytic digestion did not increase susceptibility. These results suggest that the linked protein is covalently attached to the 5' termini of phi29 DNA.

MeSH Terms
Bacillus subtilis Bacteriophages/analysis,metabolism DNA, Viral/analysis,metabolism Exonucleases/metabolism Peptide Hydrolases/metabolism Phosphorylation Polynucleotide 5'-Hydroxyl-Kinase/metabolism Protein Binding Viral Proteins/analysis,isolation & purification,metabolism
Chemicals
DNA, Viral Viral Proteins Polynucleotide 5'-Hydroxyl-Kinase Exonucleases Peptide Hydrolases
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Yehle C O
References (55)
55 references, click to expand
  1. Capping of eucaryotic mRNAs.
    Cell. 1976 Dec;9(4 PT 2):645-53 PMID: 1017010
  2. Relaxation complexes of plasmid DNA and protein. I. Strand-specific association of protein and DNA in the relaxed complexes of plasmids ColE1 and ColE2.
    J Biol Chem. 1975 Nov 25;250(22):8785-9 PMID: 1102543
  3. Relaxation complexes of plasmid DNA and protein. II. Characterization of the proteins associated with the unrelaxed and relaxed complexes of plasmid ColE1.
    J Biol Chem. 1975 Nov 25;250(22):8790-5 PMID: 1102544
  4. Relaxation complexes of poasmid DNA and protein. III. Association of protein with the 5' terminus of the broken DNA strand in the relaxed complex of plasmid ColE1.
    J Biol Chem. 1975 Nov 25;250(22):8796-803 PMID: 1102545
  5. Cleavage map of bacteriophage f1: location of the Escherichia coli B-specific modification sites.
    J Mol Biol. 1975 Jun 25;95(2):147-65 PMID: 1102704
  6. Thermolabile transfecting DNA from temperature-sensitive mutant of phage phi29.
    Nature. 1976 Jan 1-8;259(5538):60-3 PMID: 1250344
  7. Bidirectional replication of adenovirus type 2 DNA.
    J Virol. 1976 Apr;18(1):307-15 PMID: 1255873
  8. A DEOXYRIBONUCLEIC ACID PHOSPHATASE-EXONUCLEASE FROM ESCHERICHIA COLI. II. CHARACTERIZATION OF THE EXONUCLEASE ACTIVITY.
    J Biol Chem. 1964 Jan;239:251-8 PMID: 14114851
  9. BACTERIOPHAGE DEOXYRIBONUCLEATE INFECTION OF COMPETENT BACILLUS SUBTILIS.
    J Bacteriol. 1965 Mar;89:782-90 PMID: 14273661
  10. Structure of a nicked DNA-protein complex isolated from simian virus 40: covalent attachment of the protein to DNA and nick specificity.
    Proc Natl Acad Sci U S A. 1976 Jun;73(6):1945-9 PMID: 180531
  11. Nucleotide sequence of a fragment of SV40 DNA that contains the origin of DNA replication and specifies the 5' ends of "early" and "late" viral RNA. III. Construction of the total sequence of EcoRII-G fragment of SV40 DNA.
    J Biol Chem. 1977 Jan 10;252(1):355-67 PMID: 188810
  12. A protein covalently linked to poliovirus genome RNA.
    Proc Natl Acad Sci U S A. 1977 Jan;74(1):59-63 PMID: 189316
  13. Covalent linkage of a protein to a defined nucleotide sequence at the 5'-terminus of virion and replicative intermediate RNAs of poliovirus.
    Proc Natl Acad Sci U S A. 1977 Mar;74(3):961-5 PMID: 191841
  14. Identification of a protein linked to the ends of adenovirus DNA.
    Cell. 1977 Jun;11(2):283-95 PMID: 196758
  15. Mechanism of action of nalidixic acid: purification of Escherichia coli nalA gene product and its relationship to DNA gyrase and a novel nicking-closing enzyme.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4767-71 PMID: 200930
  16. Identification of the protein firmly bound to the ends of bacteriophage phi 29 DNA.
    Virology. 1978 Feb;84(2):279-92 PMID: 203093
  17. Nalidixic acid resistance: a second genetic character involved in DNA gyrase activity.
    Proc Natl Acad Sci U S A. 1977 Nov;74(11):4772-6 PMID: 337300
  18. Interaction between DNA and Escherichia coli protein omega. Formation of a complex between single-stranded DNA and omega protein.
    J Biol Chem. 1978 Jan 25;253(2):511-8 PMID: 338610
  19. DNA replication of bacteriophage phi29. Effect of two viral genes on the association of phage chromosomes with the host cell membrane.
    Virology. 1977 May 1;78(1):234-40 PMID: 404758
  20. Morphogenesis of bacteriophage phi 29 of Bacillus subtilis: mapping and functional analysis of the head fiber gene.
    J Virol. 1977 Oct;24(1):363-77 PMID: 409854
  21. Characterization of a protein covalently linked to the 5' termini of the DNA of Bacillus subtilis phage phi29.
    J Mol Biol. 1978 Feb 25;119(2):269-91 PMID: 416224
  22. Proteins induced in Bacillus subtilis infected with bacteriophage phi 29.
    Virology. 1973 Nov;56(1):291-9 PMID: 4200881
  23. Viral protein synthesis in bacteriophage phi 29-infected Bacillus subtilis.
    J Virol. 1973 Nov;12(5):1149-59 PMID: 4203085
  24. Analysis of bacteriophage phi 29 gene function: protein synthesis in suppressor-sensitive mutant infection of Bacillus subtilis.
    J Virol. 1974 Jan;13(1):211-21 PMID: 4204249
  25. Gene expression during the development of bacteriophage phi 29. 3. Analysis of viral-specific protein synthesis with suppressible mutants.
    J Virol. 1974 Mar;13(3):690-8 PMID: 4362871
  26. Physical characterization and simultaneous purification of bacteriophage T4 induced polynucleotide kinase, polynucleotide ligase, and deoxyribonucleic acid polymerase.
    Biochemistry. 1973 Dec 4;12(25):5045-50 PMID: 4366077
  27. Palindromic base sequences and replication of eukaryote chromosome ends.
    Nature. 1974 Aug 9;250(5466):467-70 PMID: 4469597
  28. Transfecting deoxyribonucleic acid of Bacillus bacteriophage phi 29 that is protease sensitive.
    Proc Natl Acad Sci U S A. 1972 Jun;69(6):1555-9 PMID: 4504368
  29. Origin of concatemeric T7 DNA.
    Nat New Biol. 1972 Oct 18;239(94):197-201 PMID: 4507727
  30. RNA-linked nascent DNA fragments in Escherichia coli.
    Proc Natl Acad Sci U S A. 1972 Jul;69(7):1863-7 PMID: 4558661
  31. Temperature-sensitive mutants affected in DNA synthesis in phage phi29 of Bacillus subtilis.
    Eur J Biochem. 1972 Dec 4;31(2):367-71 PMID: 4630506
  32. Selective replication of bacteriophage phi29 deoxyribonucleic acid in 6-(p-hydroxyphenylazo)-uracil-treated Bacillus subtilis.
    J Virol. 1973 Jan;11(1):153-5 PMID: 4630798
  33. DNA replication in bacteriophage ø29: the requirement of a viral-specfic product for association of ø29 DNA with the cell membrane of Bacillus amyloliquefaciens.
    Virology. 1973 Apr;52(2):351-62 PMID: 4705380
  34. A circula DNA-protein complex from adenoviruses.
    Virology. 1973 Nov;56(1):54-69 PMID: 4745628
  35. A film detection method for tritium-labelled proteins and nucleic acids in polyacrylamide gels.
    Eur J Biochem. 1974 Jul 1;46(1):83-8 PMID: 4850204
  36. Rapid bacteriophage sedimentation in the presence of polyethylene glycol and its application to large-scale virus purification.
    Virology. 1970 Mar;40(3):734-44 PMID: 4908735
  37. Synthetic nucleotide-peptides.
    Prog Nucleic Acid Res Mol Biol. 1970;10:145-82 PMID: 4910303
  38. Structure of Bacillus subtilis bacteriophage phi 29 and the length of phi 29 deoxyribonucleic acid.
    J Bacteriol. 1966 May;91(5):2081-9 PMID: 4957028
  39. Physical and biological properties of phage phi 29 deoxyribonucleic acid.
    J Virol. 1968 Oct;2(10):1185-90 PMID: 4972802
  40. DNA-protein complex in circular DNA from phage phi-29.
    Nat New Biol. 1971 Dec 29;234(52):275-7 PMID: 5002464
  41. Phosphorylation of nucleic acid by an enzyme from T4 bacteriophage-infected Escherichia coli.
    Proc Natl Acad Sci U S A. 1965 Jul;54(1):158-65 PMID: 5323016
  42. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  43. Effect of elevated temperature on deoxyribonucleic acid synthesis in bacteriophage phi-29-infected Bacillus amyloliquefaciens.
    J Virol. 1970 Oct;6(4):430-7 PMID: 5497888
  44. An exonuclease induced by bacteriophage lambda. I. Preparation of the crystalline enzyme.
    J Biol Chem. 1967 Feb 25;242(4):672-8 PMID: 6017736
  45. An exonuclease induced by bacteriophage lambda. II. Nature of the enzymatic reaction.
    J Biol Chem. 1967 Feb 25;242(4):679-86 PMID: 6017737
  46. Analysis of phi 29 and phi 15 genomes by bacterial restriction endonucleases, EcoR1 and Hpal.
    Virology. 1976 Mar;70(1):37-51 PMID: 816079
  47. Bacillus subtilis phage phi29. Characterization of gene products and functions.
    Eur J Biochem. 1976 JUL 1;66(2):229-41 PMID: 820555
  48. Analysis of gene function of bacteriophage phi 29 of Bacillus subtilis: identification of cistrons essential for viral assembly.
    J Virol. 1976 Aug;19(2):501-17 PMID: 822175
  49. DNA Replication of bacteriophage phi29: isolation of a DNA-protein complex from Bacillus subtilis cells infected with wild-type and with a suppressor-sensitive mutant.
    Virology. 1976 Sep;73(2):389-401 PMID: 822582
  50. Physical map of bacteriophage phi29 DNA.
    Virology. 1976 Oct 15;74(2):314-23 PMID: 824814
  51. Structure of the inverted terminal repetition of adenovirus type 2 DNA.
    J Virol. 1977 Feb;21(2):766-77 PMID: 833948
  52. Evidence for blocked 5'-termini in human adenovirus DNA.
    Virology. 1977 Jan;76(1):380-94 PMID: 835234
  53. Studies on the mechanism of replication of adenovirus DNA. V. The location of termini of replication.
    Virology. 1977 Mar;77(1):149-57 PMID: 851468
  54. Initiation and termination sites of adenovirus 12 DNA replication.
    Virology. 1977 May 15;78(2):415-24 PMID: 867811
  55. Two complementary strand-specific termination sites for adenovirus DNA replication.
    Cell. 1976 Oct;9(2):259-68 PMID: 975246
Article Info
Journal
Journal of virology
Abbr.
J Virol
ISSN
0022-538X
Published
1978-09-00
Pages
776-83
Language
English
Region
United States
NLM ID
0113724
PMCID
PMC525865
Subset
IM
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