ALG3 (ALG3 alpha-1,3- mannosyltransferase)

symbol
ALG3
locus group
protein-coding gene
location
3q27.1
gene_family
Dolichyl D-mannosyl phosphate dependent mannosyltransferases
alias symbol
NOT56L|Not56|CDGS4|D16Ertd36e
alias name
carbohydrate deficient glycoprotei…
entrez id
10195
ensembl gene id
ENSG00000214160
ucsc gene id
uc003fne.3
refseq accession
NM_005787
hgnc_id
HGNC:23056
approved reserved
2003-10-15
3q27.1
ChineseEnglish

ALG3, a member of the asparagine-linked glycosylation gene family, encodes the α-1,3-mannosyltransferase enzyme that operates within the endoplasmic reticulum to facilitate the early stages of N-linked glycosylation. This critical post-translational modification involves the sequential assembly of oligosaccharide chains onto asparagine residues of nascent proteins, a process fundamental to ensuring proper protein folding, structural stability, and functional integrity. Specifically, ALG3 catalyzes the transfer of a mannose residue from a dolichol pyrophosphate-linked pentasaccharide precursor (Dol-PP-Man5GlcNAc2) to form Dol-PP-Man6GlcNAc2, a pivotal step that enables subsequent elongation of the glycan chain. Disruptions in ALG3 function, typically resulting from loss-of-function mutations, are associated with congenital disorder of glycosylation type Id (CDG-Id), a severe metabolic disorder characterized by profound neurological abnormalities, developmental delay, epilepsy, hypotonia, and immunodeficiency. The underlying pathology stems from impaired N-glycosylation, which compromises the function of diverse glycoproteins, including cell surface receptors, secreted proteins, and lysosomal enzymes, thereby disrupting cellular signaling, immune responses, and metabolic homeostasis. While the consequences of ALG3 loss are well-documented, theoretical considerations suggest that its overexpression could potentially perturb glycosylation balance, exacerbate protein quality control issues, and trigger endoplasmic reticulum stress. Collectively, ALG3 exemplifies the essential role of the N-glycosylation pathway in maintaining cellular homeostasis, highlighting how defects in this enzymatic cascade contribute to a spectrum of congenital metabolic diseases.

Nucleotide sequence of ALG3:[NCBI]
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Protein Sequence
1MAAGLRKRGR SGSAAQAEGL CKQWLQRAWQ ERRLLLREPR
41YTLLVAACLC LAEVGITFWV IHRVAYTEID WKAYMAEVEG
81 VINGTYDYT QLQGDTGPLV YPAGFVYIFM GLYYATSRGT
121DIRMAQNIFA VLYLATLLLV FLIYHQTCKV PPFVFFFMCC
161A SYRVHSIF VLRLFNDPVA MVLLFLSINL LLAQRWGWGC
201CFFSLAVSVK MNVLLFAPGL LFLLLTQFGF RGALPKLGIC
241AG LQVVLGL PFLLENPSGY LSRSFDLGRQ FLFHWTVNWR
281FLPEALFLHR AFHLALLTAH LTLLLLFALC RWHRTGESIL
321SLL RDPSKR KVPPQPLTPN QIVSTLFTSN FIGICFSRSL
361HYQFYVWYFH TLPYLLWAMP ARWLTHLLRL LVLGLIELSW
401NTYP STSCS SAALHICHAV ILLQLWLGPQ PFPKSTQHSK
441KAH
Structure predicted by AlphaFold DB(UniProt: Q92685). Color indicates pLDDT confidence (dark blue = high, yellow/orange = low).
SNP variants of ALG3:           Showing partial SNPs
rs706584       rs706586       rs843331       rs1687219       rs1709660       rs1709662       rs1709663       rs2233461       rs2233462       rs2233463       rs2233464       rs2233465       rs2233466       rs2233467       rs2233468       rs2233469       rs2668195      
Forward Primer
Forward Tm
Reverse Primer
Reverse Tm
Score
CCCAGAACATCTTTGCTGTG
60
GAAGGGAGGTACCTTGCAG
60
AAAGTATCTTGTCGCTGCTG
59
TAGAAACGATCTGGTTGGGT
59
AACCTAAGTGTCGAAGACAC
58
AGTCATAGGTACCATTGATGAC
58
CCCAGAACATCTTTGCTGTG
60
GAAGGGAGGTACCTTGCAG
60
CCCAGAACATCTTTGCTGTG
60
GAAGGGAGGTACCTTGCAG
60
TACGTCTGGTATTTCCACAC
57
ATGTGTTCCAGGAGAGCTC
59
CCCAGAACATCTTTGCTGTG
60
GAAGGGAGGTACCTTGCAG
60
AAAGTATCTTGTCGCTGCTG
59
TAGAAACGATCTGGTTGGGT
59
AAAGTATCTTGTCGCTGCTG
59
TAGAAACGATCTGGTTGGGT
59
TCTGTTCCACTGGACAGTG
59
CAGCGACAAGATACTTTCCC
59

Subcellular localization of ALG3 (and its protein):

[UniProt]     [GenomeNet]

" d="M482.414,245.296c3.539,4.293,4.455,10.009,0.202,11 c-4.244,0.996-4.983-10.983-8.293-8.438c-5.271,4.08,9.834,12.271,5.144,17.287c-3.717,3.607-6.172-5.75-10.839-1.976 c-4.673,3.776,6.781,7.299,2.831,11.326c-4.354,4.045-6.979-1.449-9.837-5.517c-1.193-1.742-2.059-3.851-3.595-2.748 c-1.516,1.078-1.854,1.795-0.938,3.666c2.374,4.854,9.235,10.119,5.156,12.535c-5.636,3.346-5.044-8.871-9.426-7.574 c-4.388,1.291,2.557,10.66-1.245,11.141c-4.089,0.545-3.483-10.239-6.979-8.575c-2.522,1.206-0.929,3.071-0.938,4.899 c0.004,1.32-0.964,3.6-2.372,4.062c-3.593,1.171-8.544-1.065-10.251-3.59c-6.04-8.93,0.396-15.997,4.639-7.015 c3.023,4.642,5.182,0.834,2.839-2.219c-1.032-1.354-4.309-5.901-0.781-7.252c2.904-1.113,4.271,1.941,5.985,4.592 c2.61,4.016,5.485,0.117,3.031-3.414c-1.828-2.633-2.74-3.803,3.156-7.42c6.405-4.369,6.52,3.869,10.077,0.646 c2.309-1.832-4.783-5.149,0.06-8.995c2.896-2.293,5.18,6.207,7.961,3.516c3.523-2.737-7.717-7.369,0.117-11.736 C473.413,240.77,480.519,242.891,482.414,245.296z"/> Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
  • plasma membrane
  • cytoplasm
  • extracellular
  • golgi
  • vesicle
  • cytoskeleton
  • endoplasmic reticulum
  • nucleus
  • endosome
  • lysosome
  • mitochondrion

Gene Ontology (GO) terms for ALG3:

GO ID
Protein
Source DB
GO:0005783
C9J7S5 (UniProtKB)
IEA
GO:0016021
C9J7S5 (UniProtKB)
IEA
GO:0016758
C9J7S5 (UniProtKB)
IEA
GO:0005783
F8WE30 (UniProtKB)
IEA
GO:0016021
F8WE30 (UniProtKB)
IEA
GO:0016758
F8WE30 (UniProtKB)
IEA
GO:0005783
H7BZZ2 (UniProtKB)
IEA
GO:0016021
H7BZZ2 (UniProtKB)
IEA
GO:0016758
H7BZZ2 (UniProtKB)
IEA
GO:0005783
H7C0X4 (UniProtKB)
IEA
GO:0016021
H7C0X4 (UniProtKB)
IEA
GO:0016758
H7C0X4 (UniProtKB)
IEA
GO:0000033
Q92685 (UniProtKB)
IDA
GO:0000033
Q92685 (UniProtKB)
TAS
GO:0005789
Q92685 (UniProtKB)
IDA
GO:0005789
Q92685 (UniProtKB)
TAS
GO:0006486
Q92685 (UniProtKB)
IEA
GO:0006486
Q92685 (UniProtKB)
NAS
GO:0006488
Q92685 (UniProtKB)
TAS
GO:0016021
Q92685 (UniProtKB)
IEA
GO:0052925
Q92685 (UniProtKB)
IEA
GO:0097502
Q92685 (UniProtKB)
IEA
GO:0097502
Q92685 (UniProtKB)
IEA

microRNAs potentially regulating ALG3:     

String
BioGrid
IntAct
mentha
MINT
Reactome
Loading…
Interacting Gene Interaction Source/Score
Disease Score NofPmids NofSnps Source
Disease Score NofPmids NofSnps Source
CONGENITAL DISORDER OF GLYCOSYLATION, TYPE Id 0.481085767 6 5 BeFree_CLINVAR_CTD_human_ORPHANET_UNIPROT
Congenital, Hereditary, and Neonatal Diseases and Abnormalities 0.00272435 1 0 LHGDN
Congenital Disorders of Glycosylation 0.000271442 1 0 BeFree
Structures of ALG3/9/12 reveal the assembly logic of the N-glycan oligomannose core.
Alexander JAN, Chen SY, Mukherjee S, de Capitani M, Irobalieva RN, Rossi L, Agrawal P, Kowal J, Meirelles MA, Aebi M, Reymond JL, Kossiakoff AA, Riniker S, Locher KP Nat Chem Biol IF: 15.8 2026-09-00
Restoration of N-glycosylation via leucine-activated leucyl-tRNA synthetase 1 overcomes chemoresistance in intrahepatic cholangiocarcinoma.
Liu H, Wang J, Yao Y, Xia T, Zhang S, Pan L, Qin X, Liu Z, Wang H, Liu M, Zhang S, Zhao Z, Yang M, Gao Y, Du G, Wang W, Liu Y, Li J, Jin B J Hepatol IF: 40.1 2026-01-00
Truncated N-glycans destabilize POMT1 and POMT2 but do not limit cellular O-mannosylation in HEK293 cells.
Sturm D, Hölscher C, Martínez IA, Harst A, Konstantinidi A, Alam S, Burock R, Vakhrushev SY, Hoffmann M, Ruppert T, Rapp E, Halim A, Thiel C, Strahl S Mol Genet Metab IF: 4.0 2026-06-00
An integrated cell and medium engineering approach for production of a nanobody fusion in Saccharomyces cerevisiae.
Niemelä LRK, Kirjavainen LM, Kozlowski HCJ, Salminen H, Frey AD Appl Microbiol Biotechnol IF: 4.7 2026-01-29

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