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PMID: 42488648 Published · epublish English

Identification and validation of parthanatos-related genes in lung adenocarcinoma and construction of a prognostic risk model.

Yang Y, Liu J, Shang B, Jiang S

Abstract

As a major cause of cancer-related death, lung adenocarcinoma (LUAD) remains a significant health challenge. Parthanatos plays a crucial role in tumor progression, influencing cancer cell survival and therapy resistance. This study constructed a parthanatos-based prognostic model and explored its associated biological processes. Data on LUAD transcriptomics and parthanatos-related genes were collected from publicly databases and related literature. Differential expression analysis and weighted gene co-expression network analysis were employed to identify candidate genes. Univariate Cox regression analysis and machine learning algorithms were employed to screen prognostic genes and construct the risk model. Gene expression patterns and intercellular communication within distinct cell types were explored by single-cell sequencing. Lastly, prognostic gene expression in tissue samples was verified by reverse transcription quantitative polymerase chain reaction (RT-qPCR) and western blotting. PPP1R14B, MIF, ALG3, C11orf24, and MZT2A were identified as prognostic genes. The risk model had good predictive performance. The risk score effectively stratified patients into high- and low-risk groups with significantly divergent overall survival (p< 0.0001). Prognostic genes were involved in vital processes such as DNA replication, protein metabolism, and immune response. Single-cell analysis highlighted expression variations across cell types, particularly in epithelial cells, with strong communication from myeloid cells and fibroblasts. RT-qPCR confirmed the high expression of prognostic genes in LUAD. Importantly, PPP1R14B expression was particularly significant, and it potentially influenced the LUAD malignant phenotype. This study constructed and validated a risk model for LUAD associated with parthanatos, providing new insights into the pathological mechanisms of LUAD and highlighting potential therapeutic targets.

Keywords
lung adenocarcinoma machine learning parthanatos prognostic risk model single-cell RNA sequencing
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Article Info
Journal
Frontiers in immunology
Abbr.
Front Immunol
ISSN
1664-3224
Language
English
Region
Switzerland
NLM ID
101560960
PMCID
PMC13388751
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